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Accession: PRJEB5438 ID: 263888

Sequencing of Pseudomonas aeruginosa isolates from young cystic fibrosis patients

This study encompasses 474 clinical isolates of the P. aeruginosa that were sampled from 34 CF patients attending the Copenhagen Cystic Fibrosis Center at the University Hospital, Rigshospitalet. More...
AccessionPRJEB5438
Data TypeGenome sequencing and assembly
ScopeMonoisolate
PublicationsMarvig RL et al., "Convergent evolution and adaptation of Pseudomonas aeruginosa within patients with cystic fibrosis.", Nat Genet, 2015 Jan;47(1):57-64
SubmissionRegistration date: 15-Oct-2014
Technical University of Denmark
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)114031
WGS master474
SRA Experiments474
Publications
PubMed1
Other datasets
BioSample474
Assembly474
Assembly details:
Assembly levelNumber of Assemblies
474
474
AssemblyLevelWGSBioSampleTaxonomy
GCA_900143975.1ContigFUEJ00000000SAMEA2357491
GCA_900148485.1ContigFRXM00000000SAMEA2357738
GCA_900148475.1ContigFRXL00000000SAMEA2357737
GCA_900148465.1ContigFRXJ00000000SAMEA2357736
GCA_900148455.1ContigFRXK00000000SAMEA2357735
GCA_900148445.1ContigFRXI00000000SAMEA2357734
GCA_900148435.1ContigFRXG00000000SAMEA2357733
GCA_900148425.1ContigFRXH00000000SAMEA2357732
GCA_900148415.1ContigFRXF00000000SAMEA2357731
GCA_900148405.1ContigFRXE00000000SAMEA2357730
GCA_900148395.1ContigFRXD00000000SAMEA2357729
GCA_900148385.1ContigFRXC00000000SAMEA2357728
GCA_900148365.1ContigFRXA00000000SAMEA2357727
GCA_900148375.1ContigFRXB00000000SAMEA2357726
GCA_900148355.1ContigFRWX00000000SAMEA2357725
GCA_900148345.1ContigFRWZ00000000SAMEA2357724
GCA_900148335.1ContigFRWW00000000SAMEA2357723
GCA_900148325.1ContigFRWT00000000SAMEA2357722
GCA_900148305.1ContigFRWU00000000SAMEA2357721
GCA_900148315.1ContigFRWV00000000SAMEA2357720
GCA_900148295.1ContigFRWR00000000SAMEA2357719
GCA_900148285.1ContigFRWM00000000SAMEA2357718
GCA_900148275.1ContigFRWN00000000SAMEA2357717
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GCA_900148255.1ContigFRWY00000000SAMEA2357715
GCA_900148245.1ContigFRWP00000000SAMEA2357714
GCA_900148235.1ContigFRWQ00000000SAMEA2357713
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GCA_900144285.1ContigFRHO00000000SAMEA2357679
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GCA_900148035.1ContigFRVQ00000000SAMEA2357675
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GCA_900144215.1ContigFRHA00000000SAMEA2357673
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GCA_900144175.1ContigFRGW00000000SAMEA2357668
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GCA_900143825.1ContigFRFJ00000000SAMEA2357665
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GCA_900144055.1ContigFRGS00000000SAMEA2357663
GCA_900144155.1ContigFRHC00000000SAMEA2357662
GCA_900148015.1ContigFRVT00000000SAMEA2357661
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GCA_900143935.1ContigFRGA00000000SAMEA2357652
GCA_900144125.1ContigFRGX00000000SAMEA2357651
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GCA_900147635.1ContigFRUF00000000SAMEA2357645
GCA_900147625.1ContigFRUE00000000SAMEA2357644
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GCA_900147495.1ContigFRTS00000000SAMEA2357629
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GCA_900147435.1ContigFRTO00000000SAMEA2357622
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GCA_900147415.1ContigFRTM00000000SAMEA2357620
GCA_900147395.1ContigFRTF00000000SAMEA2357619
GCA_900147965.1ContigFRVN00000000SAMEA2357618
GCA_900147405.1ContigFRTI00000000SAMEA2357617
GCA_900147945.1ContigFRVK00000000SAMEA2357616
GCA_900147385.1ContigFRTH00000000SAMEA2357615
GCA_900147375.1ContigFRTE00000000SAMEA2357614
GCA_900147935.1ContigFRVL00000000SAMEA2357613
GCA_900147355.1ContigFRTD00000000SAMEA2357612
GCA_900144105.1ContigFRGL00000000SAMEA2357611
GCA_900147365.1ContigFRTG00000000SAMEA2357610
GCA_900147335.1ContigFRTB00000000SAMEA2357609
GCA_900147345.1ContigFRTC00000000SAMEA2357608
GCA_900147325.1ContigFRTA00000000SAMEA2357607
GCA_900147315.1ContigFRSZ00000000SAMEA2357606
GCA_900147305.1ContigFRSY00000000SAMEA2357605
GCA_900147295.1ContigFRSX00000000SAMEA2357604
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GCA_900145555.1ContigFRMF00000000SAMEA2357405
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GCA_900145535.1ContigFRMD00000000SAMEA2357403
GCA_900145525.1ContigFRMC00000000SAMEA2357402
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GCA_900145515.1ContigFRMB00000000SAMEA2357400
GCA_900145505.1ContigFRMA00000000SAMEA2357399
GCA_900145495.1ContigFRLZ00000000SAMEA2357398
GCA_900145485.1ContigFRLX00000000SAMEA2357397
GCA_900145475.1ContigFRLY00000000SAMEA2357396
GCA_900145465.1ContigFRLW00000000SAMEA2357395
GCA_900147845.1ContigFRUZ00000000SAMEA2357394
GCA_900145445.1ContigFRLT00000000SAMEA2357393
GCA_900145455.1ContigFRLV00000000SAMEA2357392
GCA_900147835.1ContigFRUY00000000SAMEA2357391
GCA_900145435.1ContigFRLS00000000SAMEA2357390
GCA_900145405.1ContigFRLU00000000SAMEA2357389
GCA_900143855.1ContigFRGB00000000SAMEA2357388
GCA_900145395.1ContigFRLM00000000SAMEA2357387
GCA_900145425.1ContigFRLR00000000SAMEA2357386
GCA_900145415.1ContigFRLQ00000000SAMEA2357385
GCA_900145385.1ContigFRLO00000000SAMEA2357384
GCA_900145365.1ContigFRLP00000000SAMEA2357383
GCA_900145375.1ContigFRLL00000000SAMEA2357382
GCA_900145355.1ContigFRLK00000000SAMEA2357381
GCA_900145345.1ContigFRLN00000000SAMEA2357380
GCA_900145335.1ContigFRLH00000000SAMEA2357379
GCA_900145325.1ContigFRLJ00000000SAMEA2357378
GCA_900144045.1ContigFRGH00000000SAMEA2357377
GCA_900145305.1ContigFRLF00000000SAMEA2357376
GCA_900145315.1ContigFRLG00000000SAMEA2357375
GCA_900145285.1ContigFRLI00000000SAMEA2357374
GCA_900145295.1ContigFRLE00000000SAMEA2357373
GCA_900145275.1ContigFRLD00000000SAMEA2357372
GCA_900145265.1ContigFRLC00000000SAMEA2357371
GCA_900145255.1ContigFRLB00000000SAMEA2357370
GCA_900145245.1ContigFRKZ00000000SAMEA2357369
GCA_900145225.1ContigFRKY00000000SAMEA2357368
GCA_900147815.1ContigFRUV00000000SAMEA2357367
GCA_900145235.1ContigFRLA00000000SAMEA2357366
GCA_900143795.1ContigFRFQ00000000SAMEA2357365
GCA_900145215.1ContigFRKX00000000SAMEA2357364
GCA_900145195.1ContigFRKV00000000SAMEA2357363
GCA_900145205.1ContigFRKW00000000SAMEA2357362
GCA_900145185.1ContigFRKU00000000SAMEA2357361
GCA_900145175.1ContigFRKT00000000SAMEA2357360
GCA_900145165.1ContigFRKS00000000SAMEA2357359
GCA_900145155.1ContigFRKR00000000SAMEA2357358
GCA_900145145.1ContigFRKP00000000SAMEA2357357
GCA_900145125.1ContigFRKN00000000SAMEA2357356
GCA_900145135.1ContigFRKQ00000000SAMEA2357355
GCA_900144035.1ContigFRGG00000000SAMEA2357354
GCA_900145115.1ContigFRKK00000000SAMEA2357353
GCA_900145105.1ContigFRKG00000000SAMEA2357352
GCA_900145085.1ContigFRKF00000000SAMEA2357351
GCA_900145095.1ContigFRKI00000000SAMEA2357350
GCA_900145075.1ContigFRKB00000000SAMEA2357349
GCA_900145065.1ContigFRKA00000000SAMEA2357348
GCA_900147805.1ContigFRUT00000000SAMEA2357347
GCA_900145055.1ContigFRJZ00000000SAMEA2357346
GCA_900145045.1ContigFRJY00000000SAMEA2357345
GCA_900147795.1ContigFRUU00000000SAMEA2357344
GCA_900145035.1ContigFRJR00000000SAMEA2357343
GCA_900145025.1ContigFRJQ00000000SAMEA2357342
GCA_900144185.1ContigFRGQ00000000SAMEA2357341
GCA_900145015.1ContigFRJT00000000SAMEA2357340
GCA_900145005.1ContigFRJN00000000SAMEA2357339
GCA_900144995.1ContigFRJO00000000SAMEA2357338
GCA_900144985.1ContigFRJM00000000SAMEA2357337
GCA_900144945.1ContigFRJU00000000SAMEA2357336
GCA_900144975.1ContigFRJP00000000SAMEA2357335
GCA_900144965.1ContigFRJS00000000SAMEA2357334
GCA_900147785.1ContigFRUW00000000SAMEA2357333
GCA_900144955.1ContigFRJL00000000SAMEA2357332
GCA_900144935.1ContigFRJJ00000000SAMEA2357331
GCA_900144925.1ContigFRJI00000000SAMEA2357330
GCA_900147775.1ContigFRUS00000000SAMEA2357329
GCA_900144915.1ContigFRJG00000000SAMEA2357328
GCA_900144905.1ContigFRJH00000000SAMEA2357327
GCA_900144895.1ContigFRKO00000000SAMEA2357326
GCA_900144885.1ContigFRKJ00000000SAMEA2357325
GCA_900144865.1ContigFRJV00000000SAMEA2357324
GCA_900144875.1ContigFRKL00000000SAMEA2357323
GCA_900144845.1ContigFRKM00000000SAMEA2357322
GCA_900144855.1ContigFRJX00000000SAMEA2357321
GCA_900147755.1ContigFRUR00000000SAMEA2357320
GCA_900144835.1ContigFRKD00000000SAMEA2357319
GCA_900147765.1ContigFRVD00000000SAMEA2357318
GCA_900144825.1ContigFRKE00000000SAMEA2357317
GCA_900143765.1ContigFRFV00000000SAMEA2357316
GCA_900144815.1ContigFRJW00000000SAMEA2357315
GCA_900147745.1ContigFRUP00000000SAMEA2357314
GCA_900144805.1ContigFRKH00000000SAMEA2357313
GCA_900144795.1ContigFRKC00000000SAMEA2357312
GCA_900147735.1ContigFRUQ00000000SAMEA2357311
GCA_900144785.1ContigFRJK00000000SAMEA2357310
GCA_900144765.1ContigFRJF00000000SAMEA2357309
GCA_900144775.1ContigFRJE00000000SAMEA2357308
GCA_900144755.1ContigFRJD00000000SAMEA2357307
GCA_900144745.1ContigFRJC00000000SAMEA2357306
GCA_900147725.1ContigFRUO00000000SAMEA2357305
GCA_900144735.1ContigFRJB00000000SAMEA2357304
GCA_900144725.1ContigFRJA00000000SAMEA2357303
GCA_900143775.1ContigFRFU00000000SAMEA2357302
GCA_900144705.1ContigFRIY00000000SAMEA2357301
GCA_900144715.1ContigFRIZ00000000SAMEA2357300
GCA_900147715.1ContigFRUM00000000SAMEA2357299
GCA_900144695.1ContigFRIX00000000SAMEA2357298
GCA_900147705.1ContigFRUN00000000SAMEA2357297
GCA_900144685.1ContigFRIW00000000SAMEA2357296
GCA_900144675.1ContigFRIV00000000SAMEA2357295
GCA_900147695.1ContigFRUL00000000SAMEA2357294
GCA_900144665.1ContigFRIT00000000SAMEA2357293
GCA_900144655.1ContigFRIU00000000SAMEA2357292
GCA_900144645.1ContigFRIS00000000SAMEA2357291
GCA_900144635.1ContigFRIR00000000SAMEA2357290
GCA_900144625.1ContigFRIP00000000SAMEA2357289
GCA_900147675.1ContigFRUJ00000000SAMEA2357288
GCA_900143915.1ContigFRGC00000000SAMEA2357287
GCA_900144615.1ContigFRIQ00000000SAMEA2357286
GCA_900144605.1ContigFRIO00000000SAMEA2357285
GCA_900144595.1ContigFRIN00000000SAMEA2357284
GCA_900144585.1ContigFRIM00000000SAMEA2357283
GCA_900144565.1ContigFRIL00000000SAMEA2357282
GCA_900144555.1ContigFRIH00000000SAMEA2357281
GCA_900144575.1ContigFRIJ00000000SAMEA2357280
GCA_900147685.1ContigFRUK00000000SAMEA2357279
GCA_900144535.1ContigFRII00000000SAMEA2357278
GCA_900144545.1ContigFRIK00000000SAMEA2357277
GCA_900144525.1ContigFRIG00000000SAMEA2357276
GCA_900144475.1ContigFRIC00000000SAMEA2357275
GCA_900144515.1ContigFRIF00000000SAMEA2357274
GCA_900144505.1ContigFRIA00000000SAMEA2357273
GCA_900144485.1ContigFRID00000000SAMEA2357272
GCA_900144495.1ContigFRIE00000000SAMEA2357271
GCA_900144465.1ContigFRIB00000000SAMEA2357270
GCA_900144455.1ContigFRHX00000000SAMEA2357269
GCA_900144445.1ContigFRHU00000000SAMEA2357268
GCA_900144415.1ContigFRHZ00000000SAMEA2357267
GCA_900144435.1ContigFRHW00000000SAMEA2357266
GCA_900143805.1ContigFRFL00000000SAMEA2357265
GCA_900147545.1ContigFRTZ00000000SAMEA2357631
SRA Data Details
ParameterValue
Data volume, Gbases338
Data volume, Tbytes0.23

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