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Accession: PRJNA269051 ID: 269051

Roseobacter

Roseobacter Genome sequencing and assembly

Sequencing of Roseobacter symbionts from Euprymna scolopes accessory nidamental gland

Accession	PRJNA269051
Data Type	Genome sequencing and assembly
Scope	Multispecies
Organism	Roseobacter[Taxonomy ID: 2433] Bacteria; Pseudomonadati; Pseudomonadota; Alphaproteobacteria; Rhodobacterales; Roseobacteraceae; Roseobacter
Publications	Collins AJ et al., "Comparative genomics of Roseobacter clade bacteria isolated from the accessory nidamental gland of Euprymna scolopes.", Front Microbiol, 2015;6:123
Grants	"Characterizing the role of host blood cells in a beneficial symbiosis" (Grant ID IOS-0958006, National Science Foundation)
Submission	Registration date: 2-Jan-2015 University of Connecticut
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	723
WGS master	11
SRA Experiments	11
Protein Sequences	46915
Publications
PubMed	1
PMC	1
Other datasets
BioSample	11
Assembly	11

Assembly details:

Assembly level

Number of Assemblies

Scaffold

Contig

10
1
11

Assembly	Level	WGS	BioSample	Strain	Taxonomy
GCA_000813785.1		JWLE00000000	SAMN03246060	ANG-DT	Leisingera sp. ANG-DT
GCA_000813745.1		JWLC00000000	SAMN03246058	ANG-M1	Leisingera sp. ANG-M1
GCA_000813905.1		JWLG00000000	SAMN03246063	ANG-M6	Leisingera sp. ANG-M6
GCA_000813965.1		JWLI00000000	SAMN03246065	ANG-M7	Leisingera sp. ANG-M7
GCA_000813885.1		JWLM00000000	SAMN03246061	ANG-S	Leisingera sp. ANG-S
GCA_000813945.1		JWLF00000000	SAMN03246062	ANG-S3	Leisingera sp. ANG-S3
GCA_000813925.1		JWLH00000000	SAMN03246064	ANG-S5	Leisingera sp. ANG-S5
GCA_000813725.1		JWLD00000000	SAMN03246059	ANG-Vp	Leisingera sp. ANG-Vp
GCA_000813985.1		JWLJ00000000	SAMN03246066	ANG-R	Ruegeria sp. ANG-R
GCA_000814005.1		JWLK00000000	SAMN03246067	ANG-S4	Ruegeria sp. ANG-S4
GCA_000814025.1		JWLL00000000	SAMN03246068	ANG-S1	Tateyamaria sp. ANG-S1

SRA Data Details

Parameter	Value
Data volume, Gbases	6
Data volume, Mbytes	3590

Supplemental Content

Related information

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Full text in PMC
PMC links
Genome
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Nucleotide
Related Nucleotide entry
Protein
Related Proteins
PubMed
PubMed Links
SRA
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Taxonomy
Taxonomy Links
WGS master
Link to WGS master record(s)

LinkOut to external resources

GOLD: 11 Sequencing Projects [Genomes On Line Database]
GOLD: 11 Sequencing Projects
Genomes On Line Database
2667527653: Leisingera sp. ANG-M6 [Integrated Microbial Genomes]
2667527653: Leisingera sp. ANG-M6
Integrated Microbial Genomes
2690316183: Leisingera sp. ANG-M1 [Integrated Microbial Genomes]
2690316183: Leisingera sp. ANG-M1
Integrated Microbial Genomes
2698536347: Tateyamaria sp. ANG-S1 [Integrated Microbial Genomes]
2698536347: Tateyamaria sp. ANG-S1
Integrated Microbial Genomes
SILVA LSU Database [SILVA]
SILVA LSU Database
SILVA
SILVA SSU Database [SILVA]
SILVA SSU Database
SILVA

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