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Genome Information for Pectobacterium atrosepticum
In the present study, identification of sRNAs in the complete genome of P. atrosepticum SCRI1043 was undertaken using in silico prediction methods as well as experimentally via strand-specific RNA-sequencing.
More...In the present study, identification of sRNAs in the complete genome of P. atrosepticum SCRI1043 was undertaken using in silico prediction methods as well as experimentally via strand-specific RNA-sequencing. This was done to identify sRNA candidates expressed under starvation conditions in P. atrosepticum. Additionally, differential expression analysis indicated that formation of many of these sRNAs is induced during exposure of bacteria to starvation compared to rich medium conditions, suggesting the important role of sRNAs in bacterial adaptive response and in the survival of P. atrosepticum cells during nutrient deficiency induced stress. Finally, this work provides a basis for future experimental characterization and validation of sRNAs in plant pathogens.
Less...| Accession | PRJNA281053 |
| Data Type | Transcriptome or Gene expression |
| Scope | Monoisolate |
| Organism | Pectobacterium atrosepticum SCRI1043[Taxonomy ID: 218491] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium; Pectobacterium atrosepticum; Pectobacterium atrosepticum SCRI1043 |
| Grants | - "University of Pretoria PostGrad Research Grant (studentship)" (Grant ID N/A, University of Pretoria)
- "The Russian Foundation for Basic Research" (Grant ID 15-04-02380, The Russian Foundation for Basic Research)
- "NRF Thuthuka Grant" (Grant ID 69362, National Research Foundation)
- "NRF South Africa Russia Bilateral Grant" (Grant ID 75252, National Research Foundation)
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| Submission | Registration date: 14-Apr-2015
- University of Pretoria
- Beijing Genomics Institute (BGI HongKong)
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| Relevance | Agricultural |
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