Bacteria (ID 302716) - BioProject

Display Settings:

Format

Summary
BioProject ID list
Accessions List

Send to:

Choose Destination

File
Clipboard
Collections
My Bibliography

Accession: PRJNA302716 ID: 302716

Bacteria

Clinically relevant bacteria TAILORED-Treatment

Identification of protein biomarkers for proteotyping pathogenic bacteria and their metabolic functions.

Accession	PRJNA302716
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 4) Less...	Salvà-Serra F et al., "Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.", Genome Announc, 2016 Mar 24;4(2) More... Salvà-Serra F et al., "Draft Genome Sequence of Streptococcus gordonii Type Strain CCUG 33482T.", Genome Announc, 2016 Mar 24;4(2) Jakobsson HE et al., "Draft Genome Sequence of Moraxella catarrhalis Type Strain CCUG 353T.", Genome Announc, 2016 Jun 16;4(3) Karlsson R et al., "Proteotyping: Proteomic characterization, classification and identification of microorganisms--A prospectus.", Syst Appl Microbiol, 2015 Jun;38(4):246-57 Cohen A et al., "A multifaceted 'omics' approach for addressing the challenge of antimicrobial resistance.", Future Microbiol, 2015;10(3):365-76 Less...
Grants	"FP7-HEALTH-2013-INNOVATION-1" (Grant ID HEALTH 2013.2.3.1-2, European Comission)
Submission	Registration date: 9-Feb-2016 TAILORED-Treatment project - University of Gothenburg - CCUG
Related Resources	Project webpage
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	4650
WGS master	103
Genomic DNA	1
SRA Experiments	5
Protein Sequences	157479
Publications
PubMed	4
PMC	2
Other datasets
BioSample	104
Assembly	104

Assembly details:

Download

Assembly level

Number of Assemblies

1
94
9
104

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_021391275.1	MPLA00000000		SAMN06020002	CCUG 219	Bordetella bronchiseptica
GCA_002015075.1	MUXZ00000000		SAMN06308713	CCUG 3714	Canicola haemoglobinophilus
GCA_002015085.1	MUXW00000000		SAMN06308701	CCUG 3712	Glaesserella parasuis
GCA_001679335.1	LZPH00000000		SAMN05219236	CCUG 26840	Haemophilus aegyptius
GCA_001679305.1	LZPG00000000		SAMN05219235	CCUG 628	Haemophilus aegyptius
GCA_001679445.1	LZOY00000000		SAMN05225441	CCUG 39154	Haemophilus haemolyticus
GCA_001679045.1	LYCK00000000		SAMN05043237	CCUG 12834	Haemophilus haemolyticus
GCA_001679135.1	LZDL00000000		SAMN05214003	CCUG 24149	Haemophilus haemolyticus
GCA_001679235.1	LZDP00000000		SAMN05214360	CCUG 26214	Haemophilus influenzae
GCA_001679415.1	LZMV00000000		SAMN05219232	CCUG 60490	Haemophilus influenzae
GCA_001679365.1	LZMU00000000		SAMN05219228	CCUG 54503	Haemophilus influenzae
GCA_002015115.1	MUYA00000000		SAMN06308712	CCUG 43573	Haemophilus paracuniculus
GCA_002015035.1	MUXY00000000		SAMN06308710	CCUG 3716	Haemophilus parahaemolyticus
GCA_001679405.1	LZMW00000000		SAMN05219234	CCUG 58848	Haemophilus parainfluenzae
GCA_001679455.1	LZMY00000000		SAMN05219283	CCUG 62655	Haemophilus parainfluenzae
GCA_001679325.1	LZMX00000000		SAMN05219282	CCUG 62654	Haemophilus parainfluenzae
GCA_002015045.1	MUXX00000000		SAMN06308708	CCUG 3718	Haemophilus paraphrohaemolyticus
GCA_001679485.1	LZOZ00000000		SAMN05225442	CCUG 60358	Haemophilus sp. CCUG 60358
GCA_001679495.1	LZOX00000000		SAMN05225439	CCUG 66565	Haemophilus sp. CCUG 66565
GCA_018271645.1	MUYQ00000000		SAMN06289793	CCUG 69694	Klebsiella pneumoniae
GCA_001678995.1	LZNA00000000		SAMN05213465	CCUG 59586	Moraxella atlantae
GCA_001679065.1	LZMZ00000000		SAMN05213942	CCUG 66109	Moraxella atlantae
GCA_002027585.1	MXAO00000000		SAMN06556518	CCUG 6415	Moraxella atlantae
GCA_002014975.1	MUXV00000000		SAMN06308688	CCUG 2133	Moraxella bovis
GCA_002014965.1	MUXT00000000		SAMN06308682	CCUG 8415A	Moraxella canis
GCA_001679105.1	LZDJ00000000		SAMN05213945	CCUG 18283	Moraxella catarrhalis
GCA_001679075.1	LZDK00000000		SAMN05213996	CCUG 58286	Moraxella catarrhalis
GCA_001679345.1	LZYD00000000		SAMN05219449	CCUG 57283	Moraxella catarrhalis
GCA_001632285.1	LWAH00000000		SAMN04606841	CCUG 353	Moraxella catarrhalis
GCA_002014985.1	MUXU00000000		SAMN06308687	CCUG 355	Moraxella caviae
GCA_002015175.1	MUYC00000000		SAMN06308730	CCUG 2154	Moraxella cuniculi
GCA_002027555.1	MXAP00000000		SAMN06556573	CCUG 4950	Moraxella equi
GCA_002027545.1	MXAN00000000		SAMN06556471	CCUG 4441	Moraxella lacunata
GCA_001679265.1	LZDR00000000		SAMN05214411	CCUG 65142	Moraxella lacunata
GCA_001679225.1	LZMS00000000		SAMN05217631	CCUG 57757A	Moraxella lacunata
GCA_002014765.1	MUYT00000000		SAMN06291427	CCUG 9405	Moraxella lincolnii
GCA_001679155.1	LZDN00000000		SAMN05214262	CCUG 60284	Moraxella nonliquefaciens
GCA_001679125.1	LZDM00000000		SAMN05214002	CCUG 47514	Moraxella nonliquefaciens
GCA_001679005.1	LXTW00000000		SAMN04994741	CCUG 348	Moraxella nonliquefaciens
GCA_001679205.1	LZDQ00000000		SAMN05214362	CCUG 57516	Moraxella osloensis
GCA_001679175.1	LZDO00000000		SAMN05214315	CCUG 350	Moraxella osloensis
GCA_001679275.1	LZMT00000000		SAMN05219448	CCUG 67237	Moraxella osloensis
GCA_002014825.1	MUYU00000000		SAMN06293379	CCUG 54913	Moraxella pluranimalium
GCA_002014855.1	MUYV00000000		SAMN06293387	CCUG 54912	Moraxella porci DSM 25326
GCA_018271695.1	MUYS00000000		SAMN06290549	CCUG 69693	Pseudomonas aeruginosa
GCA_018271685.1	MUYR00000000		SAMN06290462	CCUG 69692	Pseudomonas aeruginosa
GCA_001553855.1	LQWV00000000		SAMN04395146	CCUG 33482	Streptococcus gordonii
GCA_016642265.1	MRXX00000000		SAMN06134709	CCUG 66490	Streptococcus lactarius
GCA_020640935.1	NWMU00000000		SAMN07645354	CCUG 70037	Streptococcus mitis
GCA_002014875.1	MUXS00000000		SAMN06302341	CCUG 61082	Streptococcus mitis
GCA_002014755.1	MUYN00000000		SAMN06286552	CCUG 31611	Streptococcus mitis
GCA_002014795.1	MUYO00000000		SAMN06286559	CCUG 63687	Streptococcus mitis
GCA_002014885.1	MUXP00000000		SAMN06299363	CCUG 13229	Streptococcus oralis
GCA_001639395.1	LWCG00000000		SAMN04625404	CCUG 62648	Streptococcus oralis
GCA_001639375.1	LWCF00000000		SAMN04625306	CCUG 24891	Streptococcus oralis
GCA_001639355.1	LWCE00000000		SAMN04623586	CCUG 35754	Streptococcus oralis
GCA_017883985.1	PRDG00000000		SAMN08474742	CCUG 70868	Streptococcus oricebi
GCA_017884005.1	QFAY00000000		SAMN09081243	CCUG 70867	Streptococcus panodentis
GCA_015006635.1	MLJH00000000		SAMN05915833	CCUG 68718	Streptococcus pneumoniae
GCA_001870645.1	MECM00000000		SAMN05715961	CCUG 45673	Streptococcus pneumoniae
GCA_001856065.1	MAVR00000000		SAMN05366909	CCUG 36618	Streptococcus pneumoniae
GCA_001642845.1	LWKY00000000		SAMN04859023	CCUG 63665	Streptococcus pneumoniae
GCA_001639345.1	LWCD00000000		SAMN04623576	CCUG 7206	Streptococcus pneumoniae
GCA_001637415.1	LQQI00000000		SAMN04387809	CCUG 35272	Streptococcus pneumoniae
GCA_001637405.1	LQQG00000000		SAMN04387653	CCUG 1350	Streptococcus pneumoniae
GCA_001637385.1	LQQH00000000		SAMN04387660	CCUG 11780	Streptococcus pneumoniae
GCA_001637485.1	LQQK00000000		SAMN04387839	CCUG 35180	Streptococcus pneumoniae
GCA_001637465.1	LQQJ00000000		SAMN04387817	CCUG 33774	Streptococcus pneumoniae
GCA_001679535.1	LQXF00000000		SAMN04407280	CCUG 28588	Streptococcus pneumoniae
GCA_001679515.1	LRDQ00000000		SAMN04420267	CCUG 28588	Streptococcus pneumoniae
GCA_001678985.1	LSLM00000000		SAMN04481652	CCUG 6798	Streptococcus pneumoniae
GCA_001982725.1	MLFZ00000000		SAMN05912979	CCUG 35229	Streptococcus pneumoniae
GCA_001982715.1	MLFY00000000		SAMN05912978	CCUG 32672	Streptococcus pneumoniae
GCA_001982705.1	MLGA00000000		SAMN05912981	CCUG 36800	Streptococcus pneumoniae
GCA_001982685.1	MLFX00000000		SAMN05912866	CCUG 35561	Streptococcus pneumoniae
GCA_002014115.1	MNBI00000000		SAMN05916380	CCUG 69382	Streptococcus pneumoniae
GCA_002014095.1	MVBL00000000		SAMN05916359	CCUG 69380	Streptococcus pneumoniae
GCA_002014075.1	MNBH00000000		SAMN05916360	CCUG 69381	Streptococcus pneumoniae
GCA_011714705.1	RXXL00000000		SAMN10587710	CCUG 72019	Streptococcus pseudopneumoniae
GCA_011714685.1	RXXJ00000000		SAMN10587712	CCUG 72029	Streptococcus pseudopneumoniae
GCA_011714665.1	RXXI00000000		SAMN10587713	CCUG 72040	Streptococcus pseudopneumoniae
GCA_011714955.1	RXXW00000000		SAMN10587699	CCUG 47366	Streptococcus pseudopneumoniae
GCA_011714925.1	RXXU00000000		SAMN10587701	CCUG 50871	Streptococcus pseudopneumoniae
GCA_011714915.1	RXXV00000000		SAMN10587700	CCUG 50868	Streptococcus pseudopneumoniae
GCA_011714855.1	RXXR00000000		SAMN10587704	CCUG 64062	Streptococcus pseudopneumoniae
GCA_011714835.1	RXXS00000000		SAMN10587703	CCUG 63793	Streptococcus pseudopneumoniae
GCA_011714825.1	RXXQ00000000		SAMN10587705	CCUG 70988	Streptococcus pseudopneumoniae
GCA_011714745.1	RXXM00000000		SAMN10587709	CCUG 72018	Streptococcus pseudopneumoniae
GCA_011714755.1	RXXN00000000		SAMN10587708	CCUG 71996	Streptococcus pseudopneumoniae
GCA_011714735.1	RXXK00000000		SAMN10587711	CCUG 72028	Streptococcus pseudopneumoniae
GCA_011714795.1	RXXP00000000		SAMN10587706	CCUG 71653	Streptococcus pseudopneumoniae
GCA_011714895.1	RXXT00000000		SAMN10587702	CCUG 61551	Streptococcus pseudopneumoniae
GCA_002087075.1	MWSM00000000		SAMN06459226	CCUG 49455	Streptococcus pseudopneumoniae ATCC BAA-960 = CCUG 49455
GCA_002014955.1	MUXR00000000		SAMN06302302	CCUG 63747	Streptococcus pseudopneumoniae
GCA_002014925.1	MUXQ00000000		SAMN06299414	CCUG 62647	Streptococcus pseudopneumoniae
GCA_004028355.1		1	SAMN08915690	CCUG 4207	Streptococcus pyogenes
GCA_002014815.1	MUYP00000000		SAMN06286562	CCUG 47803	Streptococcus pyogenes
GCA_001982785.1	MLGC00000000		SAMN05912995	CCUG 4207	Streptococcus pyogenes
GCA_001982765.1	MLGB00000000		SAMN05912983	CCUG 33061	Streptococcus pyogenes
GCA_016642415.1	MRXY00000000		SAMN06134731	CCUG 66516	Streptococcus rubneri
GCA_001650315.1	LVJM00000000		SAMN04575401	CCUG 49591	Streptococcus sp. CCUG 49591
GCA_011714815.1	RXXO00000000		SAMN10587707	CCUG 71758	Streptococcus sp. CCUG 71758
GCA_002015155.1	MUYD00000000		SAMN06308731	CCUG 4438	[Haemophilus] ducreyi
GCA_002015125.1	MUYB00000000		SAMN06308729	CCUG 31170	[Haemophilus] felis

SRA Data Details

Parameter	Value
Data volume, Gbases	4
Data volume, Mbytes	2707

BioProject

Result Filters

Display Settings:

Send to:

Bacteria

Clinically relevant bacteria TAILORED-Treatment

Supplemental Content

Related information

Related Resources

LinkOut to external resources

Recent activity