Bacteria (ID 305687) - BioProject

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Accession: PRJNA305687 ID: 305687

Bacteria

Culture Collection University of Gothenburg (CCUG)

Whole genome sequencing of bacterial species of the Culture Collection University of Gothenburg (CCUG)

Accession	PRJNA305687
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications (total 4) Less...	Carvalheira A et al., "Acinetobacter portensis sp. nov. and Acinetobacter guerrae sp. nov., isolated from raw meat.", Int J Syst Evol Microbiol, 2020 Aug;70(8):4544-4554 More... Carvalheira A et al., "Acinetobacter portensis sp. nov. and Acinetobacter guerrae sp. nov., isolated from raw meat.", Int J Syst Evol Microbiol, 2020 Aug;70(8):4544-4554 Claverías F et al., "Corynebacterium alimapuense sp. nov., an obligate marine actinomycete isolated from sediment of Valparaíso bay, Chile.", Int J Syst Evol Microbiol, 2019 Mar;69(3):783-790 Marathe NP et al., "Scandinavium goeteborgense gen. nov., sp. nov., a New Member of the Family Enterobacteriaceae Isolated From a Wound Infection, Carries a Novel Quinolone Resistance Gene Variant.", Front Microbiol, 2019;10:2511 Salvà-Serra F et al., "Genome Sequences of Two Naphthalene-Degrading Strains of Pseudomonas balearica, Isolated from Polluted Marine Sediment and from an Oil Refinery Site.", Genome Announc, 2017 Apr 6;5(14) Less...
Submission	Registration date: 11-Dec-2015 University of Gothenburg - CCUG
Related Resources	Culture Collection University of Gothenburg (CCUG)
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1654
WGS master	88
Genomic DNA	18
SRA Experiments	47
Protein Sequences	120035
Publications
PubMed	4
PMC	2
Other datasets
BioSample	108
Assembly	98

Assembly details:

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Assembly level

Number of Assemblies

10
43
45
98

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_013072655.1	LXUI00000000		SAMN04961597	Ac_1538	Acinetobacter defluvii
GCA_009372255.1	LXGN00000000		SAMN04924829	AC 1271	Acinetobacter guerrae
GCA_009372215.1	LWRV00000000		SAMN04884745	AC 877	Acinetobacter portensis
GCA_013072675.1	LXUJ00000000		SAMN04961598	Ac_3412	Acinetobacter sp. Ac_3412
GCA_013072695.1	LXUK00000000		SAMN04961602	Ac_5812	Acinetobacter sp. Ac_5812
GCA_006546835.1	VICB00000000		SAMN12142209	CCUG 34287	Actinomyces johnsonii
GCA_006546825.1	VICC00000000		SAMN12142211	CCUG 34288	Actinomyces oris
GCA_036858185.1	JAAAQE000000000		SAMN13841368	CCUG 33915	Actinomyces sp. CCUG 33915
GCA_004525795.1	SPDW00000000		SAMN11246704	CCUG 14476	Actinomyces viscosus
GCA_030412845.1	JAJHNU000000000		SAMN22883175	CCUG 75668	Alcaligenes endophyticus
GCA_005222955.1	LWUA00000000		SAMN04901711	CCUG 61487	Blastococcus sp. CCUG 61487
GCA_021023135.1	PGFV00000000		SAMN07987672	CCUG 69071	Brevibacterium sp. CCUG 69071
GCA_003601925.1	QZWH00000000		SAMN10094259	CCUG 35510	Buttiauxella izardii
GCA_003818135.1	RPOH00000000		SAMN10440164	CCUG 35512	Buttiauxella warmboldiae
GCA_022750545.1	PUIC00000000		SAMN08595225	CCUG 60055	Caulobacter sp. CCUG 60055
GCA_003818115.1	RPOI00000000		SAMN10440282	CCUG 30791	Citrobacter youngae
GCA_017590175.1	JAFFPN000000000		SAMN17833475	CCUG 7968	Clostridium botulinum
GCA_017591115.1	JAFFPM000000000		SAMN17833476	CCUG 7969	Clostridium botulinum
GCA_017590155.1	JAFFPL000000000		SAMN17833477	CCUG 7970	Clostridium haemolyticum
GCA_017590215.1	JAFFPK000000000		SAMN17833478	CCUG 7971	Clostridium sp. CCUG 7971
GCA_003716585.1	PTJO00000000		SAMN08535650	VA37-3	Corynebacterium alimapuense
GCA_024453835.1		1	SAMN18647610	CCUG 38989	Corynebacterium genitalium ATCC 33030
GCA_024453815.1		1	SAMN18647611	CCUG 27540	Corynebacterium pseudogenitalium
GCA_024454035.1	JAGPZC000000000		SAMN18647488	CCUG 59401	Corynebacterium pseudogenitalium
GCA_024454005.1	JAGPYX000000000		SAMN18647493	CCUG 18816	Corynebacterium pseudogenitalium
GCA_024453955.1	JAGPYV000000000		SAMN18647495	CCUG 60159	Corynebacterium pseudogenitalium
GCA_024453935.1	JAGPYW000000000		SAMN18647494	CCUG 55013	Corynebacterium pseudogenitalium
GCA_007713825.1	RXIQ00000000		SAMN10573990	56948	Corynebacterium sanguinis
GCA_007713855.1	RXIR00000000		SAMN10573991	58734	Corynebacterium sanguinis
GCA_007713815.1	RXIP00000000		SAMN10573978	CCUG 43075	Corynebacterium sanguinis
GCA_007713875.1	RXIS00000000		SAMN10578900	45173	Corynebacterium sanguinis
GCA_007641235.1		1	SAMN10573883	CCUG 58655	Corynebacterium sanguinis
GCA_024453995.1	JAGPYT000000000		SAMN18647497	CCUG 51687	Corynebacterium sp. CCUG 51687
GCA_024453945.1	JAGPYU000000000		SAMN18647496	CCUG 61414	Corynebacterium sp. CCUG 61414
GCA_024454115.1	JAGPZB000000000		SAMN18647489	CCUG 65737	Corynebacterium sp. CCUG 65737
GCA_024454095.1	JAGPZA000000000		SAMN18647490	CCUG 69979	Corynebacterium sp. CCUG 69979
GCA_024454055.1	JAGPYZ000000000		SAMN18647491	CCUG 70398	Corynebacterium sp. CCUG 70398
GCA_024454075.1	JAGPYY000000000		SAMN18647492	CCUG 71335	Corynebacterium sp. CCUG 71335
GCA_030323645.1		1	SAMN11653762	HMFL31	Ectopseudomonas guguanensis
GCA_025183745.1	JAGPNS000000000		SAMN18697773	CCUG 67822	Enterobacter cloacae
GCA_003606205.2	QZDQ00000000		SAMN10091212	CCUG 72520	Enterobacter mori
GCA_020224095.1	NRIQ00000000		SAMN07537278	CCUG 70166	Enterobacter sp. CCUG 70166
GCA_013420665.1	LYLO00000000		SAMN05150137	CCUG 67584	Enterobacteriaceae bacterium CCUG 67584
GCA_025183165.1	JAGPOG000000000		SAMN18697787	CCUG 75163	Escherichia coli
GCA_025182975.1	JAGPOO000000000		SAMN18697795	CCUG 75166	Escherichia coli
GCA_009577985.1		7	SAMN12169096	CCUG 73778	Escherichia coli
GCA_032085515.1	JASXSX000000000		SAMN35733954	CCUG 57540	Gleimia hominis
GCA_021043325.1	JAJNKD000000000		SAMN23423859	CCUG 75669T	Ideonella azotifigens
GCA_021049305.1		2	SAMN23421340	CCUG 30977	Ideonella dechloratans
GCA_025183105.1	JAGPOJ000000000		SAMN18697790	CCUG 67827	Klebsiella aerogenes
GCA_025183645.1	JAGPNW000000000		SAMN18697777	CCUG 67825	Klebsiella aerogenes
GCA_025183515.1	JAGPOA000000000		SAMN18697781	CCUG 75160	Klebsiella aerogenes
GCA_025183505.1	JAGPNZ000000000		SAMN18697780	CCUG 75159	Klebsiella aerogenes
GCA_025183445.1	JAGPOB000000000		SAMN18697782	CCUG 75168	Klebsiella pneumoniae
GCA_025183365.1	JAGPOC000000000		SAMN18697783	CCUG 67830	Klebsiella pneumoniae
GCA_025183345.1	JAGPOK000000000		SAMN18697791	CCUG 67828	Klebsiella pneumoniae
GCA_025183325.1	JAGPOF000000000		SAMN18697786	CCUG 67826	Klebsiella pneumoniae
GCA_025183295.1	JAGPOE000000000		SAMN18697785	CCUG 74849	Klebsiella pneumoniae
GCA_025183265.1	JAGPOD000000000		SAMN18697784	CCUG 67831	Klebsiella pneumoniae
GCA_025183585.1	JAGPNX000000000		SAMN18697778	CCUG 75157	Klebsiella pneumoniae
GCA_025183545.1	JAGPNY000000000		SAMN18697779	CCUG 75158	Klebsiella pneumoniae
GCA_025183115.1	JAGPOI000000000		SAMN18697789	CCUG 75162	Klebsiella pneumoniae
GCA_025183125.1	JAGPOH000000000		SAMN18697788	CCUG 75161	Klebsiella pneumoniae
GCA_025182965.1	JAGPON000000000		SAMN18697794	CCUG 75165	Klebsiella pneumoniae
GCA_025182925.1	JAGPOM000000000		SAMN18697793	CCUG 75164	Klebsiella pneumoniae
GCA_025182905.1	JAGPOP000000000		SAMN18697796	CCUG 75167	Klebsiella pneumoniae
GCA_025182915.1	JAGPOL000000000		SAMN18697792	CCUG 67829	Klebsiella pneumoniae
GCA_025183715.1	JAGPNU000000000		SAMN18697775	CCUG 67823	Klebsiella pneumoniae
GCA_025183705.1	JAGPNT000000000		SAMN18697774	CCUG 67824	Klebsiella pneumoniae
GCA_025183685.1	JAGPNV000000000		SAMN18697776	CCUG 75156	Klebsiella pneumoniae
GCA_020833785.1	PDDL00000000		SAMN07740918	CCUG 69068	Kocuria sp. CCUG 69068
GCA_004115925.1	SDDX00000000		SAMN10768966	CCUG 25894	Lelliottia nimipressuralis
GCA_029991695.1	SSCF00000000		SAMN11370771	CCUG 73408	Moraxella lacunata
GCA_030015045.1	SSCG00000000		SAMN11370849	CCUG 73411	Moraxella lacunata
GCA_030015085.1	SSCI00000000		SAMN11370852	CCUG 73410	Moraxella nonliquefaciens
GCA_029991895.1	SSCH00000000		SAMN11370851	CCUG 73409	Moraxella nonliquefaciens
GCA_030015105.1	SSCJ00000000		SAMN11370859	CCUG 73412	Moraxella osloensis
GCA_030015145.1	SSCK00000000		SAMN11370871	CCUG 73413	Moraxella osloensis
GCA_021025975.1	JAJNBX000000000		SAMN23424481	CCUG 2156	Neisseria cinerea
GCA_023472875.1	JAMDHR000000000		SAMN28187201	CCUG 17915	Neisseria perflava
GCA_008195485.1		1	SAMN12634799	CCUG 51971	Pseudomonas aeruginosa
GCA_008180925.1	VTBE00000000		SAMN12635140	CCUG 59626	Pseudomonas aeruginosa
GCA_008180895.1	VTBD00000000		SAMN12635087	CCUG 59347	Pseudomonas aeruginosa
GCA_008244635.1	VTFP00000000		SAMN12642288	CCUG 73745	Pseudomonas aeruginosa
GCA_008244625.1	VTFO00000000		SAMN12642281	CCUG 73744	Pseudomonas aeruginosa
GCA_021023115.1	QQAI00000000		SAMN07987671	CCUG 69069	Psychrobacter sp. CCUG 69069
GCA_003935895.2		2	SAMN05150228	CCUG 66741	Scandinavium goeteborgense
GCA_003022395.1	NSBX00000000		SAMN07566687	CCUG 69385	Staphylococcus argenteus
GCA_003010635.1	NSBY00000000		SAMN07566689	CCUG 69384	Staphylococcus argenteus
GCA_024399415.1		1	SAMN09081250	CCUG 53468	Streptococcus oralis
GCA_018340015.1	RAXS00000000		SAMN10140100	SAGV3-2SA2	Stutzerimonas balearica
GCA_018316915.2		1	SAMN09983098	Z8	Stutzerimonas balearica
GCA_001575035.2	LONE00000000		SAMN04331779	LS401	Stutzerimonas balearica
GCA_001575025.2	LONF00000000		SAMN04334590	st101	Stutzerimonas balearica
GCA_026192495.1	RBEB00000000		SAMN10145407	3MP-B	Stutzerimonas stutzeri
GCA_026192415.1	RBEA00000000		SAMN10145406	4MP-B	Stutzerimonas stutzeri
GCA_028570825.1	JAQQBT000000000		SAMN32975111	CCUG 15886	Vibrio sp. CCUG 15886
GCA_013285155.1	JABTEL000000000		SAMN15082204	CCUG 63832	Winogradskyella undariae

SRA Data Details

Parameter	Value
Data volume, Gbases	78
Data volume, Mbytes	37128

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Culture Collection University of Gothenburg (CCUG)

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