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Accession: PRJEB9682 ID: 305797

Genomic study of the contamination pattern by Listeria monocytogenes in the ham processing industry of Northern Italy.

Illumina Miseq genome sequencing of Listeria monocytogenes isolates for the study of the contamination pattern of the ham processing industry in Northern Italy in 2012.

A study of the contamination pattern by Listeria monocytogenes in the ham industry of Northern Italy was carried out through extensive microbiological testing of various food-contact and non food-contact surfaces along with foodstuffs in the processing plants. More...
AccessionPRJEB9682
Data TypeGenome sequencing and assembly
ScopeMonoisolate
SubmissionRegistration date: 12-Dec-2015
Istituto Zooprofilattico Sperimentale della Lombardia e del Emilia Romagna (IZSLER)
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)12029
WGS master74
Other datasets
BioSample74
Assembly74
Assembly details:
Assembly levelNumber of Assemblies
74
74
AssemblyLevelWGSBioSampleIsolateTaxonomy
GCA_001495195.1ContigCWML00000000SAMEA3466598
LM52
GCA_001499495.1ContigCWMT00000000SAMEA3466605
LM59
GCA_001499155.1ContigCWLW00000000SAMEA3466559
LM13
GCA_001499335.1ContigCWMW00000000SAMEA3466606
LM60
GCA_001492475.1ContigCWLX00000000SAMEA3466549
LM3
GCA_001492715.1ContigCWMM00000000SAMEA3466597
LM51
GCA_001492855.1ContigCWME00000000SAMEA3466553
LM7
GCA_001492755.1ContigCWLB00000000SAMEA3466558
LM12
GCA_001493615.1ContigCWMP00000000SAMEA3466602
LM56
GCA_001493595.1ContigCWLU00000000SAMEA3466552
LM6
GCA_001493535.1ContigCWKY00000000SAMEA3466560
LM14
GCA_001493255.1ContigCWMQ00000000SAMEA3466610
LM64
GCA_001492915.1ContigCWNG00000000SAMEA3466620
Lm74
GCA_001492955.1ContigCWMY00000000SAMEA3466609
LM63
GCA_001493035.1ContigCWMN00000000SAMEA3466599
LM53
GCA_001494495.1ContigCWKW00000000SAMEA3466563
LM17
GCA_001494355.1ContigCWLL00000000SAMEA3466575
LM29
GCA_001494455.1ContigCWMZ00000000SAMEA3466614
LM68
GCA_001496415.1ContigCWLS00000000SAMEA3466561
LM15
GCA_001494575.1ContigCWKM00000000SAMEA3466578
LM32
GCA_001494975.1ContigCWLI00000000SAMEA3466568
LM22
GCA_001495075.1ContigCWLM00000000SAMEA3466594
LM48
GCA_001494235.1ContigCWKT00000000SAMEA3466567
LM21
GCA_001494195.1ContigCWLK00000000SAMEA3466551
LM5
GCA_001493655.1ContigCWKO00000000SAMEA3466593
LM47
GCA_001497815.1ContigCWLA00000000SAMEA3466586
LM40
GCA_001497995.1ContigCWMJ00000000SAMEA3466577
LM31
GCA_001498575.1ContigCWMV00000000SAMEA3466611
LM65
GCA_001497635.1ContigCWNA00000000SAMEA3466619
LM73
GCA_001497715.1ContigCWMR00000000SAMEA3466603
LM57
GCA_001497565.1ContigCWMU00000000SAMEA3466607
LM61
GCA_001498715.1ContigCWND00000000SAMEA3466617
LM71
GCA_001498815.1ContigCWMI00000000SAMEA3466573
LM27
GCA_001498115.1ContigCWLJ00000000SAMEA3466581
LM35
GCA_001498095.1ContigCWMG00000000SAMEA3466550
LM4
GCA_001498075.1ContigCWKQ00000000SAMEA3466557
LM11
GCA_001495255.1ContigCWLT00000000SAMEA3466555
LM9
GCA_001495455.1ContigCWMK00000000SAMEA3466596
LM50
GCA_001495355.1ContigCWKZ00000000SAMEA3466548
LM2
GCA_001495495.1ContigCWKN00000000SAMEA3466582
LM36
GCA_001496335.1ContigCWLN00000000SAMEA3466591
LM45
GCA_001496455.1ContigCWLY00000000SAMEA3466566
LM20
GCA_001496595.1ContigCWMC00000000SAMEA3466574
LM28
GCA_001496755.1ContigCWMF00000000SAMEA3466583
LM37
GCA_001496975.1ContigCWNC00000000SAMEA3466601
LM55
GCA_001496955.1ContigCWMX00000000SAMEA3466608
LM62
GCA_001497315.1ContigCWNE00000000SAMEA3466612
LM66
GCA_001488395.1ContigCWNF00000000SAMEA3466613
LM67
GCA_001487775.1ContigCWLV00000000SAMEA3466571
LM25
GCA_001488015.1ContigCWLH00000000SAMEA3466570
LM24
GCA_001487205.1ContigCWKU00000000SAMEA3466562
LM16
GCA_001487535.1ContigCWNH00000000SAMEA3466616
LM70
GCA_001489195.1ContigCWLE00000000SAMEA3466569
LM23
GCA_001489795.1ContigCWLR00000000SAMEA3466579
LM33
GCA_001489075.1ContigCWMH00000000SAMEA3466590
LM44
GCA_001488995.1ContigCWKP00000000SAMEA3466554
LM8
GCA_001488275.1ContigCWNI00000000SAMEA3466618
LM72
GCA_001488255.1ContigCWLQ00000000SAMEA3466587
LM41
GCA_001488235.1ContigCWLF00000000SAMEA3466592
LM46
GCA_001488435.1ContigCWMO00000000SAMEA3466600
LM54
GCA_001489235.1ContigCWMD00000000SAMEA3466564
LM18
GCA_001489895.1ContigCWKR00000000SAMEA3466589
LM43
GCA_001489875.1ContigCWKV00000000SAMEA3466547
LM1
GCA_001490075.1ContigCWLC00000000SAMEA3466595
LM49
GCA_001490055.1ContigCWLO00000000SAMEA3466572
LM26
GCA_001490035.1ContigCWMA00000000SAMEA3466576
LM30
GCA_001490115.1ContigCWLP00000000SAMEA3466556
LM10
GCA_001489375.1ContigCWMS00000000SAMEA3466604
LM58
GCA_001491615.1ContigCWLD00000000SAMEA3466580
LM34
GCA_001492155.1ContigCWKX00000000SAMEA3466585
LM39
GCA_001490875.1ContigCWNB00000000SAMEA3466615
LM69
GCA_001490275.1ContigCWLG00000000SAMEA3466588
LM42
GCA_001490355.1ContigCWKS00000000SAMEA3466584
LM38
GCA_001490455.1ContigCWMB00000000SAMEA3466565
LM19

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