Bacteria (ID 352198) - BioProject

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Accession: PRJNA352198 ID: 352198

Bacteria

Genetic relatedness of ESBL-Enterobacteriaceae and VRE in hospitals and the community, Northern Netherlands and Germany

Prevalence and genomic analysis of ESBL-Enterobacteriaceae in hospitals and the community in the Northern Netherlands and Germany.

Accession	PRJNA352198
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Zhou X et al., "Epidemiology of Extended-Spectrum β-Lactamase-Producing E. coli and Vancomycin-Resistant Enterococci in the Northern Dutch-German Cross-Border Region.", Front Microbiol, 2017;8:1914
Submission	Registration date: 2-Nov-2016 University Medical Center Groningen
Relevance	Epidemiological

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9593
WGS master	66
SRA Experiments	66
Protein Sequences	303935
Publications
PubMed	1
PMC	1
Other datasets
BioSample	67
Assembly	66

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

39
27
66

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_002442475.1	NXPB00000000	SAMN06111314	4_Efcm_HA-NL	Enterococcus faecium
GCA_002442445.1	NXOY00000000	SAMN06111311	1_Efcm_CA-NL	Enterococcus faecium
GCA_002442315.1	NXPG00000000	SAMN06111319	9_Efcm_HA-DE	Enterococcus faecium
GCA_002442275.1	NXPE00000000	SAMN06111317	7_Efcm_HA-NL	Enterococcus faecium
GCA_002631505.1	NXOZ00000000	SAMN06111312	2_Efcm_HA-NL	Enterococcus faecium
GCA_002631705.1	NXPI00000000	SAMN06111321	11_Efcm_HA-DE	Enterococcus faecium
GCA_002631655.1	NXPD00000000	SAMN06111316	6_Efcm_HA-NL	Enterococcus faecium
GCA_002631665.1	NXPH00000000	SAMN06111320	10_Efcm_HA-DE	Enterococcus faecium
GCA_002631645.1	NXPF00000000	SAMN06111318	8_Efcm_HA-DE	Enterococcus faecium
GCA_002631625.1	NXPA00000000	SAMN06111313	3_Efcm_HA-NL	Enterococcus faecium
GCA_002631535.1	NXPC00000000	SAMN06111315	5_Efcm_HA-NL	Enterococcus faecium
GCA_002573305.1	MPIE00000000	SAMN05977335	15_Esco_HA-NL	Escherichia coli
GCA_002573325.1	MPIK00000000	SAMN05977336	16_Esco_HA-NL	Escherichia coli
GCA_002573075.1	MOXW00000000	SAMN05977323	4_Esco_CA-NL	Escherichia coli
GCA_002573065.1	MOXY00000000	SAMN05977325	6_Esco_CA-NL	Escherichia coli
GCA_002573025.1	MOXU00000000	SAMN05977321	2_Esco_CA-NL	Escherichia coli
GCA_002573015.1	MOXT00000000	SAMN05967539	1_Esco_CA-NL	Escherichia coli
GCA_002573395.1	MPIG00000000	SAMN05977340	20_Esco_HA-NL	Escherichia coli
GCA_002573465.1	MPSA00000000	SAMN05977342	21_Esco_HA-NL	Escherichia coli
GCA_002573445.1	MPIF00000000	SAMN05977341	20b_Esco_HA-NL	Escherichia coli
GCA_002573405.1	MPII00000000	SAMN05977338	18_Esco_HA-NL	Escherichia coli
GCA_002573375.1	MPIJ00000000	SAMN05977337	17_Esco_HA-NL	Escherichia coli
GCA_002573315.1	MPID00000000	SAMN05977334	14_Esco_HA-NL	Escherichia coli
GCA_002573205.1	MPHZ00000000	SAMN05977330	11_Esco_CA-NL	Escherichia coli
GCA_002573185.1	MPHY00000000	SAMN05977329	10_Esco_CA-NL	Escherichia coli
GCA_002573265.1	MPIC00000000	SAMN05977333	13_Esco_HA-NL	Escherichia coli
GCA_002573175.1	MPHX00000000	SAMN05977328	9_Esco_CA-NL	Escherichia coli
GCA_002573155.1	MPHW00000000	SAMN05977327	8_Esco_CA-NL	Escherichia coli
GCA_002573125.1	MOXZ00000000	SAMN05977326	7_Esco_CA-NL	Escherichia coli
GCA_002573115.1	MOXX00000000	SAMN05977324	5_Esco_CA-NL	Escherichia coli
GCA_002573055.1	MOXV00000000	SAMN05977322	3_Esco_CA-NL	Escherichia coli
GCA_002573555.1	MPIH00000000	SAMN05977339	19_Esco_HA-NL	Escherichia coli
GCA_002631575.1	NXOT00000000	SAMN05977370	44_Esco_HA-DE	Escherichia coli
GCA_002631565.1	NXOK00000000	SAMN05977361	35b_Esco_HA-NL	Escherichia coli
GCA_002631585.1	NXOJ00000000	SAMN05977360	35_Esco_HA-NL	Escherichia coli
GCA_002631495.1	NXOR00000000	SAMN05977368	42_Esco_HA-DE	Escherichia coli
GCA_002631485.1	NXOQ00000000	SAMN05977367	41_Esco_HA-DE	Escherichia coli
GCA_002631455.1	NXON00000000	SAMN05977364	38_Esco_HA-DE	Escherichia coli
GCA_002631405.1	NXNX00000000	SAMN05977348	25b_Esco_HA-NL	Escherichia coli
GCA_002631435.1	NXOH00000000	SAMN05977358	33b_Esco_HA-NL	Escherichia coli
GCA_002631395.1	NXNT00000000	SAMN05977344	22c_Esco_HA-NL	Escherichia coli
GCA_002631365.1	NXNV00000000	SAMN05977346	24_Esco_HA-NL	Escherichia coli
GCA_002631375.1	NXOA00000000	SAMN05977351	28_Esco_HA-NL	Escherichia coli
GCA_002442255.1	NXOS00000000	SAMN05977369	43_Esco_HA-DE	Escherichia coli
GCA_002442245.1	NXOX00000000	SAMN05977374	48_Esco_HA-DE	Escherichia coli
GCA_002442235.1	NXOL00000000	SAMN05977362	36_Esco_HA-NL	Escherichia coli
GCA_002442195.1	NXOI00000000	SAMN05977359	34_Esco_HA-NL	Escherichia coli
GCA_002442165.1	NXOF00000000	SAMN05977356	32b_Esco_HA-NL	Escherichia coli
GCA_002442185.1	NXOG00000000	SAMN05977357	33_Esco_HA-NL	Escherichia coli
GCA_002442155.1	NXOE00000000	SAMN05977355	32_Esco_HA-NL	Escherichia coli
GCA_002442075.1	NXNZ00000000	SAMN05977350	27_Esco_HA-NL	Escherichia coli
GCA_002442105.1	NXOB00000000	SAMN05977352	29_Esco_HA-NL	Escherichia coli
GCA_002442085.1	NXOD00000000	SAMN05977354	31_Esco_HA-NL	Escherichia coli
GCA_002442095.1	NXOC00000000	SAMN05977353	30_Esco_HA-NL	Escherichia coli
GCA_002442025.1	NXNW00000000	SAMN05977347	25_Esco_HA-NL	Escherichia coli
GCA_002442015.1	NXNY00000000	SAMN05977349	26_Esco_HA-NL	Escherichia coli
GCA_002441995.1	NXNS00000000	SAMN05977343	22_Esco_HA-NL	Escherichia coli
GCA_002442005.1	NXNU00000000	SAMN05977345	23_Esco_HA-NL	Escherichia coli
GCA_002442395.1	NXOU00000000	SAMN05977371	45_Esco_HA-DE	Escherichia coli
GCA_002442415.1	NXOW00000000	SAMN05977373	47_Esco_HA-DE	Escherichia coli
GCA_002442365.1	NXOP00000000	SAMN05977366	40_Esco_HA-DE	Escherichia coli
GCA_002442405.1	NXOV00000000	SAMN05977372	46_Esco_HA-DE	Escherichia coli
GCA_002442325.1	NXOM00000000	SAMN05977363	37_Esco_HA-DE	Escherichia coli
GCA_002442335.1	NXOO00000000	SAMN05977365	39_Esco_HA-DE	Escherichia coli
GCA_002573255.1	MPIA00000000	SAMN05977331	12_Esco_HA-NL	Escherichia marmotae
GCA_002573245.1	MPIB00000000	SAMN05977332	12b_Esco_HA-NL	Escherichia marmotae

SRA Data Details

Parameter	Value
Data volume, Gbases	28
Data volume, Mbytes	16949

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Bacteria

Genetic relatedness of ESBL-Enterobacteriaceae and VRE in hospitals and the community, Northern Netherlands and Germany

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