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Accession: PRJNA352562 ID: 352562

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
The goal of this study is to find the source of intrauterine E. coli associated with metritis.
AccessionPRJNA352562
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 17-Nov-2016
University of Florida
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)2630
WGS master45
Protein Sequences104979
Other datasets
BioSample45
Assembly45
Assembly details:
Assembly levelNumber of Assemblies
7
38
45
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_001881505.1ContigMPAY00000000SAMN05982262
KG-8
GCA_001881665.1ContigMPDQ00000000SAMN06005637
KG-5
GCA_001881645.1ContigMPDR00000000SAMN06004908
KG-16
GCA_001881605.1ContigMPBF00000000SAMN05991790
KG-24
GCA_002993705.1ContigPVOI00000000SAMN08628290
KG-3
GCA_002993685.1ContigPVOH00000000SAMN08628271
KG-2
GCA_002993665.1ContigPVOK00000000SAMN08630961
KG-6
GCA_002993645.1ContigPVOL00000000SAMN08630963
KG-7
GCA_002993605.1ContigPVOM00000000SAMN08630965
KG-9
GCA_002993615.1ContigPVOJ00000000SAMN08630613
KG-4
GCA_002993585.1ContigPVOG00000000SAMN08636685
KG-15
GCA_002993555.1ContigPVOD00000000SAMN08636681
KG-12
GCA_002993545.1ContigPVOF00000000SAMN08636684
KG-14
GCA_002993505.1ContigPVOE00000000SAMN08636682
KG-13
GCA_002993515.1ContigPVOC00000000SAMN08636680
KG-11
GCA_003048085.1ContigQAGA00000000SAMN08823394
KG-20
GCA_003048055.1ContigQAGB00000000SAMN08823380
KG-19
GCA_003048045.1ContigQAGD00000000SAMN08823355
KG-17
GCA_003048015.1ContigQAFZ00000000SAMN08823409
KG-21
GCA_003048005.1ContigQAGC00000000SAMN08823368
KG-18
GCA_003048145.1ContigQAFY00000000SAMN08823419
KG-22
GCA_003048105.1ContigQAFX00000000SAMN08823434
KG-23
GCA_017313235.1ContigJAFLQD000000000SAMN18106603
KG-56
GCA_017313185.1ScaffoldJAFLQC000000000SAMN18106604
KG-57
GCA_017313165.1ScaffoldJAFLQA000000000SAMN18106606
KG-59
GCA_017313145.1ContigJAFLPY000000000SAMN18106597
KG-50
GCA_017313125.1ContigJAFLPV000000000SAMN18106594
KG-47
GCA_017313065.1ContigJAFLPS000000000SAMN18106591
KG-43
GCA_017313025.1ContigJAFLPU000000000SAMN18106593
KG-46
GCA_017313035.1ContigJAFLQI000000000SAMN18106598
KG-51
GCA_017313005.1ContigJAFLPR000000000SAMN18106590
KG-42
GCA_017312985.1ContigJAFLPX000000000SAMN18106596
KG-49
GCA_017312965.1ContigJAFLPT000000000SAMN18106592
KG-45
GCA_017312945.1ContigJAFLPO000000000SAMN18106587
KG-27
GCA_017312925.1ContigJAFLQH000000000SAMN18106599
KG-52
GCA_017312905.1ContigJAFLQB000000000SAMN18106605
KG-58
GCA_017312885.1ContigJAFLPW000000000SAMN18106595
KG-48
GCA_017312855.1ContigJAFLQE000000000SAMN18106602
KG-55
GCA_017312845.1ContigJAFLQG000000000SAMN18106600
KG-53
GCA_017312825.1ScaffoldJAFLQF000000000SAMN18106601
KG-54
GCA_017312795.1ScaffoldJAFLPP000000000SAMN18106588
KG-28
GCA_017306995.1ScaffoldJAFLEO000000000SAMN18106586
KG-25
GCA_017313175.2ScaffoldJAFLPZ000000000SAMN18106607
KG-60
GCA_017312785.2ContigJAFLPQ000000000SAMN18106589
KG-41
GCA_001881595.4ScaffoldMPDS00000000SAMN05994979
KG-10

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