marine metagenome (ID 352798) - BioProject

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Accession: PRJNA352798 ID: 352798

marine metagenome

Mediterranean Depth Profile Metagenomes

In the Mediterranean and other temperate waters, the stratification of the water column is a seasonal phenomenon that usually starts in April and ends in November. More...

Accession	PRJNA352798
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	marine metagenome[Taxonomy ID: 408172] unclassified sequences; metagenomes; ecological metagenomes; marine metagenome
Publications (total 4) Less...	López-Pérez M et al., "Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes.", Environ Microbiol, 2019 Jun;21(6):1980-1988 More... López-Pérez M et al., "Novel Caudovirales associated with Marine Group I Thaumarchaeota assembled from metagenomes.", Environ Microbiol, 2019 Jun;21(6):1980-1988 Haro-Moreno JM et al., "Prokaryotic Population Dynamics and Viral Predation in a Marine Succession Experiment Using Metagenomics.", Front Microbiol, 2019;10:2926 Haro-Moreno JM et al., "Fine metagenomic profile of the Mediterranean stratified and mixed water columns revealed by assembly and recruitment.", Microbiome, 2018 Jul 10;6(1):128 López-Pérez M et al., "Genome diversity of marine phages recovered from Mediterranean metagenomes: Size matters.", PLoS Genet, 2017 Sep;13(9):e1007018 Less...
Submission	Registration date: 5-Oct-2017 Universidad Miguel Hernandez
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	11559
WGS master	191
SRA Experiments	14
Protein Sequences	254564
Publications
PubMed	4
PMC	3
Other datasets
BioSample	205
Assembly	191

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

2
189
191

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_004321685.1	SGYK00000000	SAMN10841218	MED-G96	Acidimicrobiales bacterium
GCA_004214275.1	SGYJ00000000	SAMN10841217	MED-G95	Acidimicrobiales bacterium
GCA_029577125.1	JARQPX000000000	SAMN33879570	ActinoDeep02	Acidimicrobiales bacterium
GCA_029577135.1	JARQPW000000000	SAMN33879562	ActinoDeep01	Acidimicrobiales bacterium
GCA_029577105.1	JARQPY000000000	SAMN33879571	ActinoDeep03	Acidimicrobiales bacterium
GCA_002457435.1	NTLA00000000	SAMN06890612	MED-G01	Acidimicrobiales bacterium MED-G01
GCA_003331935.1	QOQE00000000	SAMN08905466	MED-G56	Alphaproteobacteria bacterium
GCA_003331375.1	QOQJ00000000	SAMN08905461	MED-G51	Alphaproteobacteria bacterium
GCA_004213885.1	SGYL00000000	SAMN10841219	MED-G100	Alphaproteobacteria bacterium
GCA_004321705.1	SGYM00000000	SAMN10841220	MED-G140	Alteromonas sp.
GCA_002457735.1	NTKO00000000	SAMN06890624	MED-G13	Bacteroidetes bacterium MED-G13
GCA_002457675.1	NTKK00000000	SAMN06890628	MED-G17	Bacteroidetes bacterium MED-G17
GCA_002457645.1	NTKH00000000	SAMN06890631	MED-G20	Bacteroidetes bacterium MED-G20
GCA_002457305.1	NTKG00000000	SAMN06890632	MED-G21	Bacteroidetes bacterium MED-G21
GCA_003331275.1	QOPY00000000	SAMN08905472	MED-G62	Bacteroidota bacterium
GCA_003331825.1	QOPU00000000	SAMN08905476	MED-G66	Bacteroidota bacterium
GCA_004214155.1	SGYQ00000000	SAMN10841224	MED-G174	Burkholderiaceae bacterium
GCA_004213405.1	SGYR00000000	SAMN10841225	MED-G97	Candidatus Actinomarinales bacterium
GCA_004214075.1	SGYS00000000	SAMN10841226	MED-G98	Candidatus Actinomarinales bacterium
GCA_004214055.1	SGYT00000000	SAMN10841227	MED-G99	Candidatus Actinomarinales bacterium
GCA_002457795.1	NTKZ00000000	SAMN06890613	MED-G02	Candidatus Actinomarinales bacterium MED-G02
GCA_004214085.1	SGYV00000000	SAMN10841229	MED-G137	Candidatus Dadabacteria bacterium
GCA_004213355.1	SGYU00000000	SAMN10841228	MED-G136	Candidatus Dadabacteria bacterium
GCA_004213215.1	SHAO00000000	SAMN10841274	MED-G108	Candidatus Pelagibacterales bacterium
GCA_004213155.1	SHAN00000000	SAMN10841273	MED-G107	Candidatus Pelagibacterales bacterium
GCA_004213595.1	SHAM00000000	SAMN10841272	MED-G106	Candidatus Pelagibacterales bacterium
GCA_003324645.1	QOOW00000000	SAMN08905500	MED-G90	Candidatus Poseidoniales archaeon
GCA_003324635.1	QOOV00000000	SAMN08905501	MED-G91	Candidatus Poseidoniales archaeon
GCA_003324605.1	QOOT00000000	SAMN08905503	MED-G93	Candidatus Poseidoniales archaeon
GCA_003324595.1	QOOU00000000	SAMN08905502	MED-G92	Candidatus Poseidoniales archaeon
GCA_004214165.1	SGYZ00000000	SAMN10841233	MED-G139	Candidatus Poseidoniales archaeon
GCA_003332345.1	QOPJ00000000	SAMN08905487	MED-G77	Candidatus Thioglobus sp.
GCA_004212825.1	SHBQ00000000	SAMN10841302	MED-G171	Candidatus Thioglobus sp.
GCA_004212795.1	SHBR00000000	SAMN10841303	MED-G172	Candidatus Thioglobus sp.
GCA_002456985.1	NTKE00000000	SAMN06890634	MED-G23	Candidatus Thioglobus sp. MED-G23
GCA_002456995.1	NTKC00000000	SAMN06890636	MED-G25	Candidatus Thioglobus sp. MED-G25
GCA_004213445.1	SGYX00000000	SAMN10841231	MED-G131	Chloroflexota bacterium
GCA_004214105.1	SGYW00000000	SAMN10841230	MED-G130	Chloroflexota bacterium
GCA_003331885.1	QOPZ00000000	SAMN08905471	MED-G61	Cryomorphaceae bacterium
GCA_003331875.1	QOQA00000000	SAMN08905470	MED-G60	Cryomorphaceae bacterium
GCA_003331865.1	QOPX00000000	SAMN08905473	MED-G63	Cryomorphaceae bacterium
GCA_003331265.1	QOPV00000000	SAMN08905475	MED-G65	Cryomorphaceae bacterium
GCA_002457075.1	NTKQ00000000	SAMN06890622	MED-G11	Cryomorphaceae bacterium MED-G11
GCA_002457715.1	NTKN00000000	SAMN06890625	MED-G14	Cryomorphaceae bacterium MED-G14
GCA_004213435.1	SGYY00000000	SAMN10841232	MED-G101	Erythrobacter sp.
GCA_003331305.1	QOQB00000000	SAMN08905469	MED-G59	Flavobacteriales bacterium
GCA_003331365.1	QOQC00000000	SAMN08905468	MED-G58	Flavobacteriales bacterium
GCA_004213605.1	SGZC00000000	SAMN10841236	MED-G119	Flavobacteriales bacterium
GCA_004213645.1	SGZF00000000	SAMN10841239	MED-G122	Flavobacteriales bacterium
GCA_004214015.1	SGZE00000000	SAMN10841238	MED-G121	Flavobacteriales bacterium
GCA_004213995.1	SGZJ00000000	SAMN10841243	MED-G126	Flavobacteriales bacterium
GCA_004213965.1	SGZI00000000	SAMN10841242	MED-G125	Flavobacteriales bacterium
GCA_004214315.1	SGZA00000000	SAMN10841234	MED-G117	Flavobacteriales bacterium
GCA_004214175.1	SGZH00000000	SAMN10841241	MED-G124	Flavobacteriales bacterium
GCA_004214265.1	SGZD00000000	SAMN10841237	MED-G120	Flavobacteriales bacterium
GCA_004214195.1	SGZK00000000	SAMN10841244	MED-G127	Flavobacteriales bacterium
GCA_004214185.1	SGZG00000000	SAMN10841240	MED-G123	Flavobacteriales bacterium
GCA_004321735.1	SGZB00000000	SAMN10841235	MED-G118	Flavobacteriales bacterium
GCA_002457355.1	NTKM00000000	SAMN06890626	MED-G15	Flavobacteriales bacterium MED-G15
GCA_002457295.1	NTKF00000000	SAMN06890633	MED-G22	Flavobacteriales bacterium MED-G22
GCA_004213715.1	SGZO00000000	SAMN10841248	MED-G144	Gammaproteobacteria bacterium
GCA_004213875.1	SGZR00000000	SAMN10841251	MED-G147	Gammaproteobacteria bacterium
GCA_004214065.1	SGZM00000000	SAMN10841246	MED-G142	Gammaproteobacteria bacterium
GCA_004213955.1	SGZL00000000	SAMN10841245	MED-G141	Gammaproteobacteria bacterium
GCA_004213855.1	SGZS00000000	SAMN10841252	MED-G148	Gammaproteobacteria bacterium
GCA_004213905.1	SGZQ00000000	SAMN10841250	MED-G146	Gammaproteobacteria bacterium
GCA_004213375.1	SGZP00000000	SAMN10841249	MED-G145	Gammaproteobacteria bacterium
GCA_004213285.1	SGZN00000000	SAMN10841247	MED-G143	Gammaproteobacteria bacterium
GCA_003331585.1	QOPG00000000	SAMN08905490	MED-G80	Gammaproteobacteria bacterium
GCA_003331625.1	QOPF00000000	SAMN08905491	MED-G81	Gammaproteobacteria bacterium
GCA_004213265.1	SHAA00000000	SAMN10841260	MED-G151	Halieaceae bacterium
GCA_004213755.1	SHAB00000000	SAMN10841261	MED-G152	Halieaceae bacterium
GCA_004214035.1	SHAC00000000	SAMN10841262	MED-G153	Halieaceae bacterium
GCA_003331685.1	QOPK00000000	SAMN08905486	MED-G76	Halieaceae bacterium
GCA_003331335.1	QOPL00000000	SAMN08905485	MED-G75	Halieaceae bacterium
GCA_002456955.1	NTKB00000000	SAMN06890637	MED-G26	Halieaceae bacterium MED-G26
GCA_002456975.1	NTKA00000000	SAMN06890638	MED-G27	Halieaceae bacterium MED-G27
GCA_004212725.1	SHAV00000000	SAMN10841281	MED-G109	Hyphomicrobiales bacterium
GCA_003331325.1	QOQL00000000	SAMN08905459	MED-G49	Hyphomonas sp.
GCA_004213315.1	SGZW00000000	SAMN10841256	MED-G175	Kiritimatiellaceae bacterium
GCA_004321855.1	SHAJ00000000	SAMN10841269	MED-G185	Limisphaerales bacterium
GCA_004213675.1	SHAL00000000	SAMN10841271	MED-G187	Limisphaerales bacterium
GCA_004213515.1	SHAK00000000	SAMN10841270	MED-G186	Limisphaerales bacterium
GCA_004213785.1	SGZX00000000	SAMN10841257	MED-G173	Limnobacter sp.
GCA_004213775.1	SGZY00000000	SAMN10841258	MED-G149	Litorivicinaceae bacterium
GCA_004321815.1	SGZZ00000000	SAMN10841259	MED-G150	Litorivicinaceae bacterium
GCA_002457195.1	NTJU00000000	SAMN06890644	MED-G33	Marine Group II euryarchaeote MED-G33
GCA_002457605.1	NTJT00000000	SAMN06890645	MED-G34	Marine Group II euryarchaeote MED-G34
GCA_002457155.1	NTJS00000000	SAMN06890646	MED-G35	Marine Group II euryarchaeote MED-G35
GCA_002457595.1	NTJR00000000	SAMN06890647	MED-G36	Marine Group II euryarchaeote MED-G36
GCA_002457555.1	NTJQ00000000	SAMN06890648	MED-G37	Marine Group II euryarchaeote MED-G37
GCA_002457145.1	NTJP00000000	SAMN06890649	MED-G38	Marine Group II euryarchaeote MED-G38
GCA_003332005.1	QOQM00000000	SAMN08905458	MED-G48	Microbacterium sp.
GCA_003331425.1	QOOS00000000	SAMN08905504	MED-G94	Nitrosopumilus sp.
GCA_004213725.1	SHAG00000000	SAMN10841266	MED-G157	OM182 bacterium
GCA_004213835.1	SHAE00000000	SAMN10841264	MED-G155	OM182 bacterium
GCA_004213395.1	SHAF00000000	SAMN10841265	MED-G156	OM182 bacterium
GCA_004213625.1	SHAH00000000	SAMN10841267	MED-G158	OM182 bacterium
GCA_002457275.1	NTKD00000000	SAMN06890635	MED-G24	OM182 bacterium MED-G24
GCA_002457215.1	NTJZ00000000	SAMN06890639	MED-G28	OM182 bacterium MED-G28
GCA_004213245.1	SHAD00000000	SAMN10841263	MED-G154	Oceanococcus sp.
GCA_003331925.1	QOQD00000000	SAMN08905467	MED-G57	PS1 clade bacterium
GCA_003331985.1	QOQK00000000	SAMN08905460	MED-G50	PS1 clade bacterium
GCA_003331965.1	QOQF00000000	SAMN08905465	MED-G55	PS1 clade bacterium
GCA_003332035.1	QOQI00000000	SAMN08905462	MED-G52	Paracoccaceae bacterium
GCA_004213335.1	SHAX00000000	SAMN10841283	MED-G111	Paracoccaceae bacterium
GCA_004213125.1	SHAY00000000	SAMN10841284	MED-G112	Paracoccaceae bacterium
GCA_004212715.1	SHAW00000000	SAMN10841282	MED-G110	Paracoccaceae bacterium
GCA_004213235.1	SHAI00000000	SAMN10841268	MED-G105	Parvularculaceae bacterium
GCA_002457565.1	NTJO00000000	SAMN06890650	MED-G39	Pelagibacterales bacterium MED-G39
GCA_002457515.1	NTJN00000000	SAMN06890651	MED-G40	Pelagibacterales bacterium MED-G40
GCA_002457525.1	NTJM00000000	SAMN06890652	MED-G41	Pelagibacterales bacterium MED-G41
GCA_002457485.1	NTJL00000000	SAMN06890653	MED-G42	Pelagibacterales bacterium MED-G42
GCA_002457475.1	NTJK00000000	SAMN06890654	MED-G43	Pelagibacterales bacterium MED-G43
GCA_002457445.1	NTJJ00000000	SAMN06890655	MED-G44	Pelagibacterales bacterium MED-G44
GCA_004213685.1	SHAQ00000000	SAMN10841276	MED-G179	Phycisphaeraceae bacterium
GCA_004213555.1	SHAP00000000	SAMN10841275	MED-G178	Phycisphaeraceae bacterium
GCA_004213165.1	SHAR00000000	SAMN10841277	MED-G132	Prochlorococcus sp. MED-G132
GCA_003331725.1	QOPO00000000	SAMN08905482	MED-G72	Prochlorococcus sp. MED-G72
GCA_003331715.1	QOPN00000000	SAMN08905483	MED-G73	Prochlorococcus sp. MED-G73
GCA_004213005.1	SHAU00000000	SAMN10841280	MED-G182	Pseudomonadota bacterium
GCA_004213175.1	SHAT00000000	SAMN10841279	MED-G181	Pseudomonadota bacterium
GCA_004213065.1	SHAS00000000	SAMN10841278	MED-G180	Pseudomonadota bacterium
GCA_003331695.1	QOPM00000000	SAMN08905484	MED-G74	Pseudomonas sp.
GCA_003331195.1	QOOZ00000000	SAMN08905497	MED-G87	Puniceicoccaceae bacterium
GCA_003331455.1	QOOX00000000	SAMN08905499	MED-G89	Puniceicoccaceae bacterium
GCA_002457635.1	NTJX00000000	SAMN06890641	MED-G30	Puniceicoccaceae bacterium MED-G30
GCA_002456915.1	NTJW00000000	SAMN06890642	MED-G31	Puniceicoccaceae bacterium MED-G31
GCA_002457235.1	NTJV00000000	SAMN06890643	MED-G32	Puniceicoccaceae bacterium MED-G32
GCA_002457115.1	NTKU00000000	SAMN06890618	MED-G07	Rhodobacteraceae bacterium MED-G07
GCA_002457055.1	NTKT00000000	SAMN06890619	MED-G08	Rhodobacteraceae bacterium MED-G08
GCA_004213115.1	SHBA00000000	SAMN10841286	MED-G114	Rhodospirillaceae bacterium
GCA_004213075.1	SHAZ00000000	SAMN10841285	MED-G113	Rhodospirillaceae bacterium
GCA_002457365.1	NTKP00000000	SAMN06890623	MED-G12	Rhodothermaeota bacterium MED-G12
GCA_002457035.1	NTKL00000000	SAMN06890627	MED-G16	Rhodothermaeota bacterium MED-G16
GCA_002457685.1	NTKJ00000000	SAMN06890629	MED-G18	Rhodothermaeota bacterium MED-G18
GCA_002457315.1	NTKI00000000	SAMN06890630	MED-G19	Rhodothermaeota bacterium MED-G19
GCA_003331845.1	QOPW00000000	SAMN08905474	MED-G64	Rhodothermaeota bacterium MED-G64
GCA_004212735.1	SHBD00000000	SAMN10841289	MED-G116	SAR116 cluster bacterium
GCA_004213025.1	SHBC00000000	SAMN10841288	MED-G115	SAR116 cluster bacterium
GCA_003332015.1	QOQG00000000	SAMN08905464	MED-G54	SAR116 cluster bacterium
GCA_003332025.1	QOQH00000000	SAMN08905463	MED-G53	SAR116 cluster bacterium
GCA_002457135.1	NTKX00000000	SAMN06890615	MED-G04	SAR116 cluster bacterium MED-G04
GCA_002457765.1	NTKW00000000	SAMN06890616	MED-G05	SAR116 cluster bacterium MED-G05
GCA_002457745.1	NTKV00000000	SAMN06890617	MED-G06	SAR116 cluster bacterium MED-G06
GCA_003331505.1	QOPB00000000	SAMN08905495	MED-G85	SAR86 cluster bacterium
GCA_003331605.1	QOPD00000000	SAMN08905493	MED-G83	SAR86 cluster bacterium
GCA_003331565.1	QOPE00000000	SAMN08905492	MED-G82	SAR86 cluster bacterium
GCA_003331545.1	QOPC00000000	SAMN08905494	MED-G84	SAR86 cluster bacterium
GCA_003331645.1	QOPI00000000	SAMN08905488	MED-G78	SAR86 cluster bacterium
GCA_003331635.1	QOPH00000000	SAMN08905489	MED-G79	SAR86 cluster bacterium
GCA_004212985.1	SHBE00000000	SAMN10841290	MED-G159	SAR86 cluster bacterium
GCA_004212975.1	SHBF00000000	SAMN10841291	MED-G160	SAR86 cluster bacterium
GCA_004212935.1	SHBG00000000	SAMN10841292	MED-G161	SAR86 cluster bacterium
GCA_004212845.1	SHBI00000000	SAMN10841294	MED-G163	SAR86 cluster bacterium
GCA_004212895.1	SHBN00000000	SAMN10841299	MED-G168	SAR86 cluster bacterium
GCA_004212945.1	SHBH00000000	SAMN10841293	MED-G162	SAR86 cluster bacterium
GCA_004212875.1	SHBJ00000000	SAMN10841295	MED-G164	SAR86 cluster bacterium
GCA_004212805.1	SHBM00000000	SAMN10841298	MED-G167	SAR86 cluster bacterium
GCA_004212235.1	SHBK00000000	SAMN10841296	MED-G165	SAR86 cluster bacterium
GCA_004321845.1	SHBL00000000	SAMN10841297	MED-G166	SAR86 cluster bacterium
GCA_002457245.1	NTJY00000000	SAMN06890640	MED-G29	SAR92 bacterium MED-G29
GCA_004211905.1	SHBP00000000	SAMN10841301	MED-G170	SAR92 clade bacterium
GCA_004212905.1	SHBO00000000	SAMN10841300	MED-G169	SAR92 clade bacterium
GCA_004213565.1	SHBB00000000	SAMN10841287	MED-G138	Sandaracinaceae bacterium
GCA_002457415.1	NTKY00000000	SAMN06890614	MED-G03	Sphingomonadaceae bacterium MED-G03
GCA_004212765.1	SHBS00000000	SAMN10841304	MED-G133	Synechococcus sp. MED-G133
GCA_004211895.1	SHBT00000000	SAMN10841305	MED-G134	Synechococcus sp. MED-G134
GCA_004213055.1	SHBU00000000	SAMN10841306	MED-G135	Synechococcus sp. MED-G135
GCA_003331795.1	QOPT00000000	SAMN08905477	MED-G67	Synechococcus sp. MED-G67
GCA_003331785.1	QOPS00000000	SAMN08905478	MED-G68	Synechococcus sp. MED-G68
GCA_003331765.1	QOPR00000000	SAMN08905479	MED-G69	Synechococcus sp. MED-G69
GCA_003331245.1	QOPQ00000000	SAMN08905480	MED-G70	Synechococcus sp. MED-G70
GCA_003331225.1	QOPP00000000	SAMN08905481	MED-G71	Synechococcus sp. MED-G71
GCA_004211885.1	SHBV00000000	SAMN10841307	MED-G183	Verrucomicrobiaceae bacterium
GCA_004211805.1	SHBW00000000	SAMN10841308	MED-G184	Verrucomicrobiaceae bacterium
GCA_003331495.1	QOOY00000000	SAMN08905498	MED-G88	Verrucomicrobiota bacterium
GCA_003331485.1	QOPA00000000	SAMN08905496	MED-G86	Verrucomicrobiota bacterium
GCA_004211875.1	SHBY00000000	SAMN10841310	MED-G129	Winogradskyella sp.
GCA_004211785.1	SHBX00000000	SAMN10841309	MED-G128	Winogradskyella sp.
GCA_004213805.1	SGZU00000000	SAMN10841254	MED-G103	alpha proteobacterium HIMB114
GCA_004321785.1	SGZT00000000	SAMN10841253	MED-G102	alpha proteobacterium HIMB114
GCA_004321805.1	SGZV00000000	SAMN10841255	MED-G104	alpha proteobacterium HIMB59
GCA_002457395.1	NTKS00000000	SAMN06890620	MED-G09	alpha proteobacterium MED-G09
GCA_002457065.1	NTKR00000000	SAMN06890621	MED-G10	alpha proteobacterium MED-G10
GCA_003331415.1	QOQO00000000	SAMN08905456	MED-G46	bacterium
GCA_003331405.1	QOQN00000000	SAMN08905457	MED-G47	bacterium
GCA_003332085.1	QOQP00000000	SAMN08905455	MED-G45	bacterium
GCA_004213935.1	SGYP00000000	SAMN10841223	MED-G188	bacterium
GCA_004321745.1	SGYO00000000	SAMN10841222	MED-G177	bacterium
GCA_004321715.1	SGYN00000000	SAMN10841221	MED-G176	bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	310
Data volume, Tbytes	0.12

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Mediterranean Depth Profile Metagenomes

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