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Accession: PRJEB21289 ID: 398218

Sequencing of environmental pseudomonas isolates

Siderophore cheating and competition for iron in natural Pseudomonas communities

We isolated 930 pseudomonads from 24 soil and 24 pond communities. Then we looked at their ability to produce siderophore pyoverdine, and whether level of pyoverdine production is linked to their phylogeny (based on 887 partial rpoD sequences). More...
AccessionPRJEB21289
Data TypeGenome sequencing and assembly
ScopeMonoisolate
PublicationsButaitÄ— E et al., "Siderophore cheating and cheating resistance shape competition for iron in soil and freshwater Pseudomonas communities.", Nat Commun, 2017 Sep 4;8(1):414
SubmissionRegistration date: 14-Aug-2017
UNIVERSITY OF ZUERICH
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1890
WGS master24
Genomic DNA887
Protein Sequences887
Publications
PubMed1
PMC1
Other datasets
BioSample24
Assembly24
Assembly details:
Assembly levelNumber of Assemblies
24
24
AssemblyLevelWGSBioSampleTaxonomy
GCA_900187465.1ScaffoldFYDI00000000SAMEA104128674
GCA_900187575.1ScaffoldFYDU00000000SAMEA104128673
GCA_900187565.1ScaffoldFYED00000000SAMEA104128675
GCA_900187455.1ScaffoldFYDX00000000SAMEA104128678
GCA_900187585.1ScaffoldFYDT00000000SAMEA104128677
GCA_900187645.1ScaffoldFYEE00000000SAMEA104128676
GCA_900187545.1ScaffoldFYDS00000000SAMEA104128679
GCA_900187625.1ScaffoldFYDQ00000000SAMEA104128681
GCA_900187595.1ScaffoldFYDP00000000SAMEA104128680
GCA_900187635.1ScaffoldFYEC00000000SAMEA104128682
GCA_900187605.1ScaffoldFYEA00000000SAMEA104128683
GCA_900187495.1ScaffoldFYDK00000000SAMEA104128684
GCA_900187525.1ScaffoldFYDR00000000SAMEA104128662
GCA_900187485.1ScaffoldFYDN00000000SAMEA104128663
GCA_900187535.1ScaffoldFYDV00000000SAMEA104128661
GCA_900187445.1ScaffoldFYEB00000000SAMEA104128666
GCA_900187435.1ScaffoldFYDY00000000SAMEA104128664
GCA_900187415.1ScaffoldFYDM00000000SAMEA104128665
GCA_900187515.1ScaffoldFYDZ00000000SAMEA104128668
GCA_900187555.1ScaffoldFYDW00000000SAMEA104128669
GCA_900187615.1ScaffoldFYDO00000000SAMEA104128667
GCA_900187425.1ScaffoldFYDJ00000000SAMEA104128671
GCA_900187505.1ScaffoldFYDL00000000SAMEA104128670
GCA_900187475.1ScaffoldFYDH00000000SAMEA104128672

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