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Accession: PRJNA401000 ID: 401000

Escherichia coli

Comparative Genomics of Shiga Toxin-Positive Escherichia coli Isolates from a Major Agricultural Region in California, USA

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Conduct comparative analyses of stx-encoding genomic regions in Escherichia coli isolates to determine virulence potential
AccessionPRJNA401000
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
SubmissionRegistration date: 27-Sep-2017
USDA/ARS/WRRC/PSM
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1495
WGS master16
SRA Experiments9
Protein Sequences82974
Other datasets
BioSample16
Assembly16
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases18
Data volume, Mbytes60769

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    Escherichia coli
    Comparative Genomics of Shiga Toxin-Positive Escherichia coli Isolates from a Major Agricultural Region in California, USA
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