Carbapenem-resistant Enterobacteriaceae (CRE) are spreading throughout the world. The resistant organisms are already endemic in many Asian countries. Through support from AMED, we sequenced the genomes of CRE isolated in Asian countries, providing the basis for understanding the epidemiology of CRE and their resistance mechanisms. This information may contribute to the establishment of preventive measures, and to the development of novel drugs and detection/diagnostic systems for CRE infections.
| Accession | PRJDB6372 |
| Type | Umbrella project |
| Organism | Enterobacteriaceae[Taxonomy ID: 543] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae |
| Grants | - "Japan Initiative for Global Research Network on Infectious Diseases (J-GRID)" (Grant ID N/A, Japan Agency for Medical Research and Development)
|
| Submission | Registration date: 14-Sep-2017
AMED CRE Consortium |
| NCBI Links | |
| Related Resources | |
| Relevance | Medical and Enviromental |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 19938 |
| WGS master | 102 |
| Genomic DNA | 255 |
| SRA Experiments | 1855 |
| Protein Sequences | 112077 |
| Publications |
| PubMed | 7 |
| PMC | 5 |
| Other datasets |
| BioSample | 1746 |
| Assembly | 124 |
This project encompasses the following 13 sub-projects:
| Project Type | Number of Projects |
| Genome sequencing |
3
4
7
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJDB6655 | Complete genome | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Vietnam (National Institute of Infectious...) | | PRJDB5929 | Complete genome | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Thailand (Thailand-Japan Research Collaboration...) | | PRJDB6407 | SRA or Trace | Enterobacteriaceae | AMED CRE Consortium: Carbapenem-resistant Enterobacteriaceae in Vietnam (AMED CRE Consortium) | | PRJDB7521 | Complete genome | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacterales isolated in Japan (National Institute of Infectious...) | | PRJDB7517 | SRA or Trace | Enterobacteriaceae | AMED CRE Consortium: Carbapenem-resistant Enterobacteriaceae in Vietnam (AMED CRE Consortium) | | PRJDB15848 | SRA or Trace | Enterobacteriaceae | Whole-genome sequencing analysis of carbapenem-resistant Enterobacteriaceae isolated from retail foods in Dhaka, Bangladesh (Thailand-Japan Research Collaboration...) | | PRJDB6406 | SRA or Trace | Escherichia coli | AMED-J-GIRD-CRE-Project (AMED CRE Consortium: Carbapenem-resistant...) |
Less... |
| Other | 5 |
BioProject
accession | Organism | Title |
|---|
| PRJDB5126 | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Myanmar (Osaka University) | | PRJDB6565 | Enterobacteriaceae | Molecular epidemiology of carbapenem-resistant Enterobacteriaceae in Osaka, Japan (Thailand-Japan Research Collaboration...) | | PRJDB6936 | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Cambodia (National Institute of Infectious...) | | PRJDB9614 | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Malawi, Africa. (Thailand-Japan Research Collaboration...) | | PRJDB7330 | Enterobacteriaceae | Whole genome sequencing of carbapenem-resistant Enterobacteriaceae isolated in Indonesia (Kobe University) (Kobe Institute of Health,...) |
|
| Umbrella project | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJDB10146 | Enterobacterales | Whole genome sequencing of carbapenem-resistant Enterobacterales isolated in Japan (AMED CRE Consortium) |
|