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Accession: PRJNA431724 ID: 431724

Klebsiella pneumoniae subsp. pneumoniae

Genome sequencing and assembly of Klebsiella pneumoniae subsp. pneumoniae from Long-term acute care rehabilitation facilities

See Genome Information for Klebsiella pneumoniae
Long-term acute care rehabilitation facilities (LTACRFs) are affected by Carbapenem-resistant Enterobacterales (CRE) in endemic settings. This study aim at determine the the molecular epidemiology of CRE in LTACRFs.
AccessionPRJNA431724
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismKlebsiella pneumoniae subsp. pneumoniae[Taxonomy ID: 72407]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Klebsiella/Raoultella group; Klebsiella; Klebsiella pneumoniae complex; Klebsiella pneumoniae; Klebsiella pneumoniae subsp. pneumoniae
SubmissionRegistration date: 14-Jun-2018
University of Florence
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3647
WGS master38
SRA Experiments38
Protein Sequences209473
Other datasets
BioSample38
Assembly38
Assembly details:
Assembly levelNumber of Assemblies
28
10
38
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_003227695.1ScaffoldPQVB00000000SAMN08399034
DG5544
GCA_003227675.1ContigPQUZ00000000SAMN08399053
DG5547
GCA_003227655.1ScaffoldPQVA00000000SAMN08399021
DG5546
GCA_003227635.1ScaffoldPQUU00000000SAMN08399029
DG5583
GCA_003227605.1ContigPQUM00000000SAMN08399046
DG6099
GCA_003227595.1ScaffoldPQUL00000000SAMN08399039
DG6106
GCA_003227545.1ContigPQUW00000000SAMN08399044
DG5560
GCA_003227535.1ContigPQUY00000000SAMN08399043
DG5556
GCA_003227555.1ContigPQUJ00000000SAMN08399051
DG6664
GCA_003227515.1ScaffoldPQUX00000000SAMN08399022
DG5559
GCA_003227495.1ScaffoldPQUQ00000000SAMN08399025
DG6071
GCA_003227475.1ScaffoldPQUV00000000SAMN08399026
DG5563
GCA_003227455.1ScaffoldPQUT00000000SAMN08399033
DG5585
GCA_003227425.1ScaffoldPQUP00000000SAMN08399032
DG6078
GCA_003227415.1ContigPQUS00000000SAMN08399041
DG6052
GCA_003227355.1ContigPQUR00000000SAMN08399040
DG6066
GCA_003227325.1ContigPQUO00000000SAMN08399042
DG6086
GCA_003227305.1ScaffoldPQUH00000000SAMN08399036
DG6682
GCA_003227285.1ContigPQUF00000000SAMN08399047
DG6684
GCA_003227275.1ScaffoldPQUC00000000SAMN08399035
DG7168
GCA_003227245.1ScaffoldPQTX00000000SAMN08399050
DG7732
GCA_003227235.1ScaffoldPQTU00000000SAMN08399045
DG7779
GCA_003227215.1ScaffoldPQTT00000000SAMN08399030
DG7783
GCA_003227175.1ScaffoldPQTQ00000000SAMN08399028
DG8154
GCA_003227185.1ScaffoldPQTR00000000SAMN08399024
DG8133
GCA_003227155.1ScaffoldPQUN00000000SAMN08399037
DG6087
GCA_003227135.1ScaffoldPQUK00000000SAMN08399023
DG6658
GCA_003227095.1ContigPQUG00000000SAMN08399055
DG6683
GCA_003227105.1ScaffoldPQUI00000000SAMN08399031
DG6681
GCA_003227055.1ScaffoldPQUD00000000SAMN08399056
DG7163
GCA_003227065.1ScaffoldPQUE00000000SAMN08399054
DG7144
GCA_003227035.1ScaffoldPQUB00000000SAMN08399057
DG7172
GCA_003227015.1ScaffoldPQUA00000000SAMN08399049
DG7180
GCA_003226995.1ScaffoldPQTZ00000000SAMN08399048
DG7190
GCA_003226975.1ScaffoldPQTY00000000SAMN08399027
DG7721
GCA_003226935.1ScaffoldPQTS00000000SAMN08399052
DG7784
GCA_003226945.1ScaffoldPQTW00000000SAMN08399058
DG7752
GCA_003226905.1ScaffoldPQTV00000000SAMN08399038
DG7773
SRA Data Details
ParameterValue
Data volume, Gbases37
Data volume, Mbytes22316

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  • Klebsiella pneumoniae subsp. pneumoniae
    Klebsiella pneumoniae subsp. pneumoniae
    Genome sequencing and assembly of Klebsiella pneumoniae subsp. pneumoniae from Long-term acute care rehabilitation facilities
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