Pectobacterium parmentieri (ID 433470) - BioProject

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Accession: PRJNA433470 ID: 433470

Pectobacterium parmentieri

Pangenome studies of Pectobacterium parmentieri

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5 additional projects are related by organism.

The study presents pangenome studies of 15 strains of Pectobacterium parmentieri, a plant pathogenic bacterium. Genomes of 12 of the analyzed strains were de novo assembled.

Accession	PRJNA433470
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Pectobacterium parmentieri[Taxonomy ID: 1905730] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Pectobacteriaceae; Pectobacterium; Pectobacterium parmentieri
Publications	Zoledowska S et al., "High genomic variability in the plant pathogenic bacterium Pectobacterium parmentieri deciphered from de novo assembled complete genomes.", BMC Genomics, 2018 Oct 16;19(1):751
Grants	"Study of pangenome of plant pathogenic bacteria from two species Dickeya solani and Pectobacterium wasabiae causative agent of losses in potato crops in Europe" (Grant ID 2014/14/M/NZ8/00501, National Science Centre Poland)
Submission	Registration date: 10-Oct-2018 University of Gdansk, Intercollegiate Faculty of Biotechnology UG&MUG
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	20
WGS master	2
Genomic DNA	11
Protein Sequences	53158
Publications
PubMed	1
PMC	1
Other datasets
BioSample	12
Assembly	12

Assembly details:

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Assembly level

Number of Assemblies

8
2
1
1
12

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_003628025.1	PSZH00000000		SAMN08494005	IFB5597	Pectobacterium parmentieri
GCA_003628015.1	PSZG00000000		SAMN08494010	IFB5626	Pectobacterium parmentieri
GCA_003628735.1		1	SAMN08494008	IFB5619	Pectobacterium parmentieri
GCA_003628715.1		1	SAMN08494007	IFB5605	Pectobacterium parmentieri
GCA_003628695.1		1	SAMN08494006	IFB5604	Pectobacterium parmentieri
GCA_003628675.1		1	SAMN08494004	IFB5486	Pectobacterium parmentieri
GCA_003628655.1		1	SAMN08494002	IFB5441	Pectobacterium parmentieri
GCA_003628635.1		1	SAMN08494001	IFB5432	Pectobacterium parmentieri
GCA_003628615.1		1	SAMN08494009	IFB5623	Pectobacterium parmentieri
GCA_003628595.1		1	SAMN08494003	IFB5485	Pectobacterium parmentieri
GCA_003628575.1		1	SAMN08493999	IFB5408	Pectobacterium parmentieri
GCA_003992745.1		2	SAMN08494000	IFB5427	Pectobacterium parmentieri

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Pectobacterium parmentieri

Pangenome studies of Pectobacterium parmentieri

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