Escherichia coli (ID 470577) - BioProject

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Accession: PRJNA470577 ID: 470577

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli

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9336 additional projects are related by organism.

The study goal is to determine whole genome sequences of a collection of European (predominantly Czech and German) enterohemorrhagic E. More...

Accession	PRJNA470577
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Karnisova L et al., "Attack of the clones: whole genome-based characterization of two closely related enterohemorrhagic Escherichia coli O26 epidemic lineages.", BMC Genomics, 2018 Aug 31;19(1):647
Submission	Registration date: 19-Jun-2018 2nd Faculty of Medicine, Charles University and Motol University Hospital
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	18644
WGS master	32
Protein Sequences	190998
Publications
PubMed	1
PMC	1
Other datasets
BioSample	32
Assembly	32

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

32
32

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_003255625.1	QFSJ00000000	SAMN09097264	04-05903	Escherichia coli
GCA_003255645.1	QFSD00000000	SAMN09097258	12-353	Escherichia coli
GCA_003255555.1	QFST00000000	SAMN09097274	16-533	Escherichia coli
GCA_003255565.1	QFSS00000000	SAMN09097273	14-391	Escherichia coli
GCA_003255575.1	QFSQ00000000	SAMN09097271	13-302	Escherichia coli
GCA_003255545.1	QFSX00000000	SAMN09097278	E-08-324	Escherichia coli
GCA_003255495.1	QFTA00000000	SAMN09097281	ED_733-10	Escherichia coli
GCA_003255505.1	QFSY00000000	SAMN09097279	E-10-68	Escherichia coli
GCA_003255465.1	QFSA00000000	SAMN09097255	12-459	Escherichia coli
GCA_003255475.1	QFTC00000000	SAMN09097283	EH_632-08	Escherichia coli
GCA_003255405.1	QFSI00000000	SAMN09097263	ED_674-08	Escherichia coli
GCA_003255425.1	QFSF00000000	SAMN09097260	09-087	Escherichia coli
GCA_003255415.1	QFSH00000000	SAMN09097262	10-085	Escherichia coli
GCA_003255345.1	QFSW00000000	SAMN09097277	E-08-233	Escherichia coli
GCA_003255325.1	QFTD00000000	SAMN09097284	LB238672	Escherichia coli
GCA_003255335.1	QFSN00000000	SAMN09097268	09-02030	Escherichia coli
GCA_003255355.1	QFSM00000000	SAMN09097267	07-03205	Escherichia coli
GCA_003255265.1	QFSC00000000	SAMN09097257	55-ECS07	Escherichia coli
GCA_003255255.1	QFSG00000000	SAMN09097261	09-185	Escherichia coli
GCA_003255275.1	QFSB00000000	SAMN09097256	14-428	Escherichia coli
GCA_003255245.1	QFSK00000000	SAMN09097265	05-06154	Escherichia coli
GCA_003255195.1	QFSL00000000	SAMN09097266	06-04484	Escherichia coli
GCA_003255175.1	QFSR00000000	SAMN09097272	14-113	Escherichia coli
GCA_003255185.1	QFSP00000000	SAMN09097270	13-194	Escherichia coli
GCA_003255165.1	QFSO00000000	SAMN09097269	13-006	Escherichia coli
GCA_003255085.1	QFSZ00000000	SAMN09097280	ED_676-08	Escherichia coli
GCA_003255115.1	QFTB00000000	SAMN09097282	EH_171-09	Escherichia coli
GCA_003255105.1	QFSU00000000	SAMN09097275	5244-00-1	Escherichia coli
GCA_003255095.1	QFSV00000000	SAMN09097276	E-06-278	Escherichia coli
GCA_003255705.1	QFRY00000000	SAMN09097253	304-ECS08	Escherichia coli
GCA_003255655.1	QFRZ00000000	SAMN09097254	18-ECS06	Escherichia coli
GCA_003255635.1	QFSE00000000	SAMN09097259	15-496	Escherichia coli

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Escherichia coli Genome sequencing and assembly

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