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Accession: PRJNA528851 ID: 528851

Bacteria

WGS of E.coli collected from food products and wild animals

WGS of E.coli isolates collected from food products (e.g. dairy, poultry and meats) and wild animals (e.g. fox, deer, badger...)
AccessionPRJNA528851
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 28-Aug-2020
- University of Technology Sydney
- Elisa Massella
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)294
Other datasets
BioSample300
Assembly294
Assembly details:
Assembly levelNumber of Assemblies
294
294
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_014328575.1ContigJACFIV000000000SAMN11246564
EC64
GCA_014328525.1ContigJACFIW000000000SAMN11246565
EC79
GCA_014328515.1ContigJACFJB000000000SAMN11246570
EC262
GCA_014328495.1ContigJACFIX000000000SAMN11246566
EC80
GCA_014328485.1ContigJACFIZ000000000SAMN11246568
EC259
GCA_014328475.1ContigJACFIY000000000SAMN11246567
EC258
GCA_014328455.1ContigJACFJA000000000SAMN11246569
EC260
GCA_014328395.1ContigJACFJC000000000SAMN11246571
EC714
GCA_014328405.1ContigJACFJE000000000SAMN11246573
EC827
GCA_014328415.1ContigJACFJD000000000SAMN11246572
EC264
GCA_014328365.1ContigJACFJG000000000SAMN11246575
EC473
GCA_014328355.1ContigJACFJF000000000SAMN11246574
EC339
GCA_014328325.1ContigJACFJH000000000SAMN11246576
EC475
GCA_014328305.1ContigJACFJL000000000SAMN11246581
EC529
GCA_014328285.1ContigJACFJK000000000SAMN11246580
EC524
GCA_014328265.1ContigJACFJI000000000SAMN11246577
EC486
GCA_014328255.1ContigJACFJJ000000000SAMN11246579
EC492
GCA_014328205.1ContigJACFJO000000000SAMN11246584
EC525
GCA_014328215.1ContigJACFJM000000000SAMN11246582
EC564
GCA_014328195.1ContigJACFJP000000000SAMN11246585
EC566
GCA_014328165.1ContigJACFJQ000000000SAMN11246586
EC710
GCA_014328155.1ContigJACFJN000000000SAMN11246583
EC568
GCA_014328135.1ContigJACFJS000000000SAMN11246589
EC800
GCA_014328095.1ContigJACFJR000000000SAMN11246587
EC712
GCA_014328075.1ContigJACFJT000000000SAMN11246590
EC801
GCA_014328065.1ContigJACFJU000000000SAMN11246591
EC802
GCA_014328055.1ContigJACFJV000000000SAMN11246592
EC803
GCA_014328015.1ContigJACFJY000000000SAMN11246595
EC806
GCA_014328025.1ContigJACFJX000000000SAMN11246594
EC805
GCA_014327965.1ContigJACFJZ000000000SAMN11246596
EC807
GCA_014327975.1ContigJACFKA000000000SAMN11246597
EC808
GCA_014327955.1ContigJACFJW000000000SAMN11246593
EC804
GCA_014327915.1ContigJACFKC000000000SAMN11246599
EC810
GCA_014327895.1ContigJACFKB000000000SAMN11246598
EC809
GCA_014327885.1ContigJACFKD000000000SAMN11246600
EC811
GCA_014327865.1ContigJACFKF000000000SAMN11246602
EC813
GCA_014327855.1ContigJACFKE000000000SAMN11246601
EC812
GCA_014327795.1ContigJACFKH000000000SAMN11246604
EC815
GCA_014327775.1ContigJACFKL000000000SAMN11246608
EC819
GCA_014327785.1ContigJACFKK000000000SAMN11246607
EC818
GCA_014327765.1ContigJACFKI000000000SAMN11246605
EC816
GCA_014327755.1ContigJACFKG000000000SAMN11246603
EC814
GCA_014327735.1ContigJACFKJ000000000SAMN11246606
EC817
GCA_014327715.1ContigJACFKO000000000SAMN11246611
EC822
GCA_014327695.1ContigJACFKM000000000SAMN11246609
EC820
GCA_014327665.1ContigJACFKS000000000SAMN11246615
EC847
GCA_014327655.1ContigJACFKN000000000SAMN11246610
EC821
GCA_014327635.1ContigJACFKP000000000SAMN11246612
EC823
GCA_014327615.1ContigJACFKQ000000000SAMN11246613
EC824
GCA_014327555.1ContigJACFKU000000000SAMN11246617
EC850
GCA_014327595.1ContigJACFKR000000000SAMN11246614
EC842
GCA_014327535.1ContigJACFKT000000000SAMN11246616
EC849
GCA_014327545.1ContigJACFKW000000000SAMN11246619
EC853
GCA_014327505.1ContigJACFKZ000000000SAMN11246622
EC856
GCA_014327495.1ContigJACFKY000000000SAMN11246621
EC855
GCA_014327465.1ContigJACFKV000000000SAMN11246618
EC852
GCA_014327455.1ContigJACFKX000000000SAMN11246620
EC854
GCA_014327435.1ContigJACFLD000000000SAMN11246626
EC861
GCA_014327405.1ContigJACFLC000000000SAMN11246625
EC860
GCA_014327395.1ContigJACFLB000000000SAMN11246624
EC859
GCA_014327365.1ContigJACFLA000000000SAMN11246623
EC857
GCA_014327355.1ContigJACFLF000000000SAMN11246628
EC863
GCA_014327335.1ContigJACFLE000000000SAMN11246627
EC862
GCA_014327285.1ContigJACFLK000000000SAMN11246633
EC868
GCA_014327295.1ContigJACFLI000000000SAMN11246631
EC866
GCA_014327275.1ContigJACFLG000000000SAMN11246629
EC864
GCA_014327245.1ContigJACFLH000000000SAMN11246630
EC865
GCA_014327235.1ContigJACFLJ000000000SAMN11246632
EC867
GCA_014327205.1ContigJACFLL000000000SAMN11246634
EC875
GCA_014327195.1ContigJACFLN000000000SAMN11246636
EC907
GCA_014327155.1ContigJACFLO000000000SAMN11246637
EC917
GCA_014327135.1ContigJACFLQ000000000SAMN11246639
EC876
GCA_014327145.1ContigJACFLP000000000SAMN11246638
EC920
GCA_014327115.1ContigJACFLM000000000SAMN11246635
EC906
GCA_014327095.1ContigJACFLS000000000SAMN11246641
EC878
GCA_014327075.1ContigJACFLR000000000SAMN11246640
EC877
GCA_014327045.1ContigJACFLV000000000SAMN11246644
EC881
GCA_014327035.1ContigJACFLW000000000SAMN11246645
EC882
GCA_014327015.1ContigJACFLT000000000SAMN11246642
EC879
GCA_014326995.1ContigJACFLU000000000SAMN11246643
EC880
GCA_014326975.1ContigJACFMO000000000SAMN11246663
EC905
GCA_014326945.1ContigJACFLY000000000SAMN11246647
EC884
GCA_014326935.1ContigJACFLX000000000SAMN11246646
EC883
GCA_014326905.1ContigJACFLZ000000000SAMN11246648
EC886
GCA_014326895.1ContigJACFMB000000000SAMN11246650
EC888
GCA_014326865.1ContigJACFMA000000000SAMN11246649
EC887
GCA_014326855.1ContigJACFMD000000000SAMN11246652
EC890
GCA_014326815.1ContigJACFME000000000SAMN11246653
EC892
GCA_014326835.1ContigJACFMC000000000SAMN11246651
EC889
GCA_014326785.1ContigJACFMF000000000SAMN11246654
EC893
GCA_014326765.1ContigJACFMH000000000SAMN11246656
EC896
GCA_014326755.1ContigJACFMG000000000SAMN11246655
EC895
GCA_014326735.1ContigJACFMI000000000SAMN11246657
EC897
GCA_014326715.1ContigJACFMJ000000000SAMN11246658
EC898
GCA_014326675.1ContigJACFMM000000000SAMN11246661
EC903
GCA_014326685.1ContigJACFMK000000000SAMN11246659
EC899
GCA_014326645.1ContigJACFMN000000000SAMN11246662
EC904
GCA_014326635.1ContigJACFML000000000SAMN11246660
EC900
GCA_014332465.1ContigJACFBK000000000SAMN11246367
EC14
GCA_014332475.1ContigJACFBI000000000SAMN11246365
EC7
GCA_014332445.1ContigJACFBH000000000SAMN11246364
EC1
GCA_014332435.1ContigJACFBL000000000SAMN11246368
EC15
GCA_014332415.1ContigJACFBJ000000000SAMN11246366
EC10
GCA_014332375.1ContigJACFBN000000000SAMN11246370
EC22
GCA_014332355.1ContigJACFBQ000000000SAMN11246373
EC30
GCA_014332315.1ContigJACFBO000000000SAMN11246371
EC28
GCA_014332335.1ContigJACFBM000000000SAMN11246369
EC19
GCA_014332325.1ContigJACFBP000000000SAMN11246372
EC29
GCA_014332285.1ContigJACFBR000000000SAMN11246374
EC54
GCA_014332275.1ContigJACFBT000000000SAMN11246376
EC57
GCA_014332235.1ContigJACFBS000000000SAMN11246375
EC55
GCA_014332225.1ContigJACFBW000000000SAMN11246379
EC81
GCA_014332215.1ContigJACFBX000000000SAMN11246380
EC193
GCA_014332195.1ContigJACFBU000000000SAMN11246377
EC76
GCA_014332175.1ContigJACFBV000000000SAMN11246378
EC78
GCA_014332155.1ContigJACFBY000000000SAMN11246381
EC197
GCA_014332105.1ContigJACFCA000000000SAMN11246383
EC200
GCA_014332095.1ContigJACFBZ000000000SAMN11246382
EC198
GCA_014332085.1ContigJACFCB000000000SAMN11246384
EC206
GCA_014332075.1ContigJACFCC000000000SAMN11246385
EC268
GCA_014332055.1ContigJACFCD000000000SAMN11246386
EC269
GCA_014331985.1ContigJACFCF000000000SAMN11246388
EC319
GCA_014332015.1ContigJACFCE000000000SAMN11246387
EC317
GCA_014331975.1ContigJACFCI000000000SAMN11246391
EC70
GCA_014331965.1ContigJACFCG000000000SAMN11246389
EC13
GCA_014331955.1ContigJACFCH000000000SAMN11246390
EC68
GCA_014331915.1ContigJACFCJ000000000SAMN11246392
EC84
GCA_014331895.1ContigJACFCL000000000SAMN11246394
EC89
GCA_014331885.1ContigJACFCK000000000SAMN11246393
EC86
GCA_014331865.1ContigJACFCM000000000SAMN11246395
EC90
GCA_014331855.1ContigJACFCN000000000SAMN11246396
EC94
GCA_014331825.1ContigJACFCO000000000SAMN11246397
EC96
GCA_014331805.1ContigJACFCP000000000SAMN11246398
EC98
GCA_014331795.1ContigJACFCQ000000000SAMN11246399
EC100
GCA_014331765.1ContigJACFCR000000000SAMN11246400
EC107
GCA_014331755.1ContigJACFCS000000000SAMN11246401
EC267
GCA_014331725.1ContigJACFCU000000000SAMN11246403
EC321
GCA_014331715.1ContigJACFCV000000000SAMN11246404
EC322
GCA_014331695.1ContigJACFCT000000000SAMN11246402
EC320
GCA_014331675.1ContigJACFCW000000000SAMN11246405
EC434
GCA_014331655.1ContigJACFCX000000000SAMN11246406
EC435
GCA_014331615.1ContigJACFCY000000000SAMN11246407
EC437
GCA_014331605.1ContigJACFDA000000000SAMN11246410
EC444
GCA_014331595.1ContigJACFCZ000000000SAMN11246409
EC441
GCA_014331565.1ContigJACFDB000000000SAMN11246411
EC449
GCA_014331555.1ContigJACFDC000000000SAMN11246412
EC450
GCA_014331515.1ContigJACFDD000000000SAMN11246413
EC454
GCA_014330665.1ContigJACFEU000000000SAMN11246456
EC695
GCA_014330655.1ContigJACFEV000000000SAMN11246457
EC699
GCA_014330635.1ContigJACFEW000000000SAMN11246458
EC700
GCA_014330615.1ContigJACFEX000000000SAMN11246459
EC720
GCA_014330585.1ContigJACFEZ000000000SAMN11246461
EC845
GCA_014330565.1ContigJACFFA000000000SAMN11246462
EC846
GCA_014330555.1ContigJACFEY000000000SAMN11246460
EC788
GCA_014330535.1ContigJACFFD000000000SAMN11246465
EC161
GCA_014330515.1ContigJACFFC000000000SAMN11246464
EC152
GCA_014330495.1ContigJACFFB000000000SAMN11246463
EC782
GCA_014330475.1ContigJACFFE000000000SAMN11246466
EC165
GCA_014330445.1ContigJACFFG000000000SAMN11246468
EC354
GCA_014330435.1ContigJACFFF000000000SAMN11246467
EC352
GCA_014330405.1ContigJACFFI000000000SAMN11246470
EC386
GCA_014330395.1ContigJACFFH000000000SAMN11246469
EC355
GCA_014330335.1ContigJACFFK000000000SAMN11246472
EC493
GCA_014330345.1ContigJACFFJ000000000SAMN11246471
EC403
GCA_014330315.1ContigJACFFL000000000SAMN11246473
EC497
GCA_014330325.1ContigJACFFM000000000SAMN11246474
EC506
GCA_014330295.1ContigJACFFN000000000SAMN11246475
EC512
GCA_014330265.1ContigJACFFQ000000000SAMN11246478
EC612
GCA_014330255.1ContigJACFFS000000000SAMN11246480
EC638
GCA_014330225.1ContigJACFFR000000000SAMN11246479
EC621
GCA_014330215.1ContigJACFFO000000000SAMN11246476
EC532
GCA_014330195.1ContigJACFFP000000000SAMN11246477
EC536
GCA_014330165.1ContigJACFFT000000000SAMN11246481
EC648
GCA_014330145.1ContigJACFFU000000000SAMN11246482
EC725
GCA_014330135.1ContigJACFFV000000000SAMN11246483
EC831
GCA_014330095.1ContigJACFFY000000000SAMN11246487
EC913
GCA_014330105.1ContigJACFFX000000000SAMN11246486
EC752
GCA_014330075.1ContigJACFFW000000000SAMN11246485
EC750
GCA_014330055.1ContigJACFFZ000000000SAMN11246488
EC918
GCA_014330035.1ContigJACFGB000000000SAMN11246490
EC83
GCA_014329995.1ContigJACFGC000000000SAMN11246491
EC201
GCA_014329985.1ContigJACFGA000000000SAMN11246489
EC82
GCA_014329975.1ContigJACFGD000000000SAMN11246492
EC202
GCA_014329955.1ContigJACFGE000000000SAMN11246493
EC203
GCA_014329925.1ContigJACFGF000000000SAMN11246495
EC205
GCA_014329915.1ContigJACFGH000000000SAMN11246497
EC271
GCA_014329895.1ContigJACFGG000000000SAMN11246496
EC265
GCA_014329875.1ContigJACFGJ000000000SAMN11246499
EC273
GCA_014329855.1ContigJACFGI000000000SAMN11246498
EC272
GCA_014329835.1ContigJACFGK000000000SAMN11246500
EC318
GCA_014329795.1ContigJACFGM000000000SAMN11246503
EC588
GCA_014329805.1ContigJACFGN000000000SAMN11246504
EC599
GCA_014329775.1ContigJACFGO000000000SAMN11246505
EC600
GCA_014329755.1ContigJACFGL000000000SAMN11246501
EC585
GCA_014329725.1ContigJACFGR000000000SAMN11246508
EC603
GCA_014329715.1ContigJACFGS000000000SAMN11246509
EC629
GCA_014329695.1ContigJACFGP000000000SAMN11246506
EC601
GCA_014329675.1ContigJACFGQ000000000SAMN11246507
EC602
GCA_014329655.1ContigJACFGT000000000SAMN11246510
EC632
GCA_014329635.1ContigJACFGU000000000SAMN11246511
EC633
GCA_014329595.1ContigJACFGW000000000SAMN11246513
EC663
GCA_014329575.1ContigJACFGV000000000SAMN11246512
EC662
GCA_014329565.1ContigJACFGX000000000SAMN11246514
EC35
GCA_014329555.1ContigJACFGY000000000SAMN11246515
EC36
GCA_014329535.1ContigJACFHA000000000SAMN11246517
EC38
GCA_014329485.1ContigJACFHB000000000SAMN11246518
EC39
GCA_014329495.1ContigJACFGZ000000000SAMN11246516
EC37
GCA_014329475.1ContigJACFHC000000000SAMN11246519
EC40
GCA_014329435.1ContigJACFHE000000000SAMN11246521
EC42
GCA_014329425.1ContigJACFHD000000000SAMN11246520
EC41
GCA_014329415.1ContigJACFHH000000000SAMN11246524
EC45
GCA_014329385.1ContigJACFHF000000000SAMN11246522
EC43
GCA_014329375.1ContigJACFHG000000000SAMN11246523
EC44
GCA_014329325.1ContigJACFHI000000000SAMN11246525
EC46
GCA_014329315.1ContigJACFHL000000000SAMN11246528
EC49
GCA_014329295.1ContigJACFHJ000000000SAMN11246526
EC47
GCA_014329305.1ContigJACFHK000000000SAMN11246527
EC48
GCA_014329275.1ContigJACFHM000000000SAMN11246529
EC50
GCA_014329245.1ContigJACFHN000000000SAMN11246530
EC51
GCA_014329225.1ContigJACFHO000000000SAMN11246531
EC52
GCA_014329215.1ContigJACFHQ000000000SAMN11246533
EC69
GCA_014329185.1ContigJACFHP000000000SAMN11246532
EC53
GCA_014329175.1ContigJACFHR000000000SAMN11246534
EC270
GCA_014329155.1ContigJACFHS000000000SAMN11246535
EC274
GCA_014329115.1ContigJACFHV000000000SAMN11246538
EC364
GCA_014329105.1ContigJACFHU000000000SAMN11246537
EC360
GCA_014329095.1ContigJACFHW000000000SAMN11246539
EC169
GCA_014329075.1ContigJACFHT000000000SAMN11246536
EC331
GCA_014329055.1ContigJACFHX000000000SAMN11246540
EC170
GCA_014329025.1ContigJACFIA000000000SAMN11246543
EC180
GCA_014329005.1ContigJACFIB000000000SAMN11246544
EC184
GCA_014328985.1ContigJACFHZ000000000SAMN11246542
EC179
GCA_014328975.1ContigJACFHY000000000SAMN11246541
EC176
GCA_014328945.1ContigJACFIC000000000SAMN11246545
EC287
GCA_014328925.1ContigJACFID000000000SAMN11246546
EC290
GCA_014328915.1ContigJACFIE000000000SAMN11246547
EC294
GCA_014328895.1ContigJACFIF000000000SAMN11246548
EC309
GCA_014328875.1ContigJACFIH000000000SAMN11246550
EC313
GCA_014328845.1ContigJACFII000000000SAMN11246551
EC329
GCA_014328835.1ContigJACFIJ000000000SAMN11246552
EC336
GCA_014328815.1ContigJACFIG000000000SAMN11246549
POLLO PARMA 1
GCA_014328795.1ContigJACFIK000000000SAMN11246553
EC342
GCA_014328755.1ContigJACFIN000000000SAMN11246556
EC369
GCA_014328765.1ContigJACFIL000000000SAMN11246554
EC365
GCA_014328725.1ContigJACFIM000000000SAMN11246555
EC366
GCA_014328715.1ContigJACFIO000000000SAMN11246557
EC372
GCA_014328695.1ContigJACFIQ000000000SAMN11246559
EC375
GCA_014328675.1ContigJACFIP000000000SAMN11246558
EC374
GCA_014328635.1ContigJACFIU000000000SAMN11246563
EC426
GCA_014328615.1ContigJACFIT000000000SAMN11246562
EC421
GCA_014328625.1ContigJACFIS000000000SAMN11246561
EC419
GCA_014328595.1ContigJACFIR000000000SAMN11246560
EC415
GCA_014331055.1ContigJACFEA000000000SAMN11246436
EC233
GCA_014331025.1ContigJACFEE000000000SAMN11246440
EC188
GCA_014331015.1ContigJACFED000000000SAMN11246439
EC156
GCA_014331495.1ContigJACFDE000000000SAMN11246414
EC112
GCA_014331445.1ContigJACFDK000000000SAMN11246420
EC130
GCA_014331455.1ContigJACFDJ000000000SAMN11246419
EC125
GCA_014331435.1ContigJACFDG000000000SAMN11246416
EC117
GCA_014331405.1ContigJACFDH000000000SAMN11246417
EC120
GCA_014331395.1ContigJACFDI000000000SAMN11246418
EC123
GCA_014331355.1ContigJACFDM000000000SAMN11246422
EC135
GCA_014331345.1ContigJACFDL000000000SAMN11246421
EC132
GCA_014331335.1ContigJACFDN000000000SAMN11246423
EC137
GCA_014331305.1ContigJACFDO000000000SAMN11246424
EC140
GCA_014331295.1ContigJACFDP000000000SAMN11246425
EC143
GCA_014331255.1ContigJACFDT000000000SAMN11246429
EC211
GCA_014331245.1ContigJACFDU000000000SAMN11246430
EC214
GCA_014331215.1ContigJACFDS000000000SAMN11246428
EC207
GCA_014331205.1ContigJACFDQ000000000SAMN11246426
EC146
GCA_014331195.1ContigJACFDR000000000SAMN11246427
EC150
GCA_014331165.1ContigJACFDX000000000SAMN11246433
EC226
GCA_014331155.1ContigJACFDV000000000SAMN11246431
EC216
GCA_014331115.1ContigJACFDZ000000000SAMN11246435
EC232
GCA_014331095.1ContigJACFDW000000000SAMN11246432
EC219
GCA_014331105.1ContigJACFDY000000000SAMN11246434
EC229
GCA_014330975.1ContigJACFEF000000000SAMN11246441
EC324
GCA_014330925.1ContigJACFEH000000000SAMN11246443
EC358
GCA_014330885.1ContigJACFEL000000000SAMN11246447
EC487
GCA_014330915.1ContigJACFEJ000000000SAMN11246445
EC465
GCA_014330895.1ContigJACFEK000000000SAMN11246446
EC468
GCA_014330875.1ContigJACFEG000000000SAMN11246442
EC346
GCA_014330855.1ContigJACFEI000000000SAMN11246444
EC414
GCA_014330815.1ContigJACFEM000000000SAMN11246448
EC515
GCA_014330825.1ContigJACFEO000000000SAMN11246450
EC520
GCA_014330795.1ContigJACFEP000000000SAMN11246451
EC548
GCA_014330765.1ContigJACFEN000000000SAMN11246449
EC517
GCA_014330755.1ContigJACFEQ000000000SAMN11246452
EC550
GCA_014330735.1ContigJACFER000000000SAMN11246453
EC625
GCA_014330685.1ContigJACFET000000000SAMN11246455
EC661
GCA_014331035.1ContigJACFEB000000000SAMN11246437
EC237
GCA_014330995.1ContigJACFEC000000000SAMN11246438
EC245
GCA_014331505.1ContigJACFDF000000000SAMN11246415
EC115
GCA_014330695.1ContigJACFES000000000SAMN11246454
EC608
SRA Data Details
ParameterValue
Data volume, Gbases143
Data volume, Mbytes57340

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