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Accession: PRJNA542869 ID: 542869

Multiple

Potential pathogenic bacteria in Crohn's disease

The aim of the study is to explore the pathogenic bacteria that contribute to Crohn's disease (CD)

Accession	PRJNA542869
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Bank NC et al., "Classification of Parabacteroides distasonis and other Bacteroidetes using O- antigen virulence gene: RfbA-Typing and hypothesis for pathogenic vs. probiotic strain differentiation.", Gut Microbes, 2022 Jan-Dec;14(1):1997293 Yang F et al., "Complete Genome Sequence of a Parabacteroides distasonis Strain (CavFT hAR46) Isolated from a Gut Wall-Cavitating Microlesion in a Patient with Severe Crohn's Disease.", Microbiol Resour Announc, 2019 Sep 5;8(36)
Grants	"Identification of Pathogenic Bacteria in Crohn's Disease" (Grant ID R21 DK118373, National Institute of Diabetes and Digestive and Kidney Diseases)
Submission	Registration date: 14-May-2019 Case Western Reserve University School of Medicine
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	10
WGS master	8
Genomic DNA	2
SRA Experiments	8
Protein Sequences	7912
Publications
PubMed	2
PMC	2
Other datasets
BioSample	11
Assembly	10

Assembly details:

Assembly level

Number of Assemblies

Complete genome

Complete genome

Scaffold

Contig

2
3
5
10

Assembly	Level	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_032463785.1		JAWDES000000000		SAMN37649369	CavFT-hAR201	Alistipes finegoldii
GCA_033099955.2		JAWLLG000000000		SAMN37663024	CavFT-hAR84	Bacteroides cellulosilyticus
GCA_033099935.1		JAWLLH000000000		SAMN37663292	CavFT-hAR92	Bacteroides ovatus
GCA_032463865.1		JAWDEU000000000		SAMN37649463	CavFT-hAR50	Bacteroides uniformis
GCA_033194755.1		JAWOJM000000000		SAMN37998435	CavFT-hAR125	Ligilactobacillus salivarius
GCA_024328725.2			1	SAMN25144067	CavFT-hAR56	Parabacteroides distasonis
GCA_006149185.1			1	SAMN11642307	CavFT-hAR46	Parabacteroides distasonis
GCA_032463925.1		JAWDEV000000000		SAMN37649475	CavFT-hAR62	Phocaeicola dorei
GCA_032463825.2		JAWDET000000000		SAMN37649453	CavFT-hAR11	Phocaeicola vulgatus
GCA_032463765.1		JAWDHD000000000		SAMN37665687	CavFT-hAR107	Phocaeicola vulgatus

SRA Data Details

Parameter	Value
Data volume, Gbases	15
Data volume, Mbytes	4208

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