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Accession: PRJNA545531 ID: 545531

Escherichia coli

Genome sequences of Shiga Toxin producing Escherichia coli that causes food-borne disease from food, clinical and environmental samplesand assembly

See Genome Information for Escherichia coli
Escherichia coli is a Gram-negative, rod shape, and facultative anaerobic. This bacteria is found in the intestinal tract of animals and human. More...
AccessionPRJNA545531
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsBalagué C et al., "Occurrence of non-O157 shiga toxin-producing Escherichia coli in ready-to-eat food from supermarkets in Argentina.", Food Microbiol, 2006 May;23(3):307-13
SubmissionRegistration date: 5-Aug-2019
U. S. Food and Drug Administraion/NCTR
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)11089
WGS master76
SRA Experiments72
Protein Sequences74813
Publications
PubMed1
Other datasets
BioSample83
Assembly76
Assembly details:
Assembly levelNumber of Assemblies
70
6
76
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_010179675.1ContigJAAECB000000000SAMN13916048
EC875221
GCA_010179635.1ContigJAAECA000000000SAMN13916056
EC872416
GCA_010179625.1ContigJAAEBZ000000000SAMN13916057
EC932783
GCA_010179615.1ScaffoldJAAEBY000000000SAMN13910263
EC886340
GCA_010499655.1ContigJAAGRW000000000SAMN14049748
EC15
GCA_010499555.1ScaffoldJAAGRX000000000SAMN14049749
EC16
GCA_010499615.1ContigJAAGRV000000000SAMN14049747
EC14
GCA_015159815.1ScaffoldJADDRS000000000SAMN16454167
SC_932783
GCA_015160795.1ScaffoldJADDTK000000000SAMN16454195
EC_566
GCA_015159835.1ScaffoldJADDRU000000000SAMN16454165
SC_872416
GCA_015160735.1ScaffoldJADDTL000000000SAMN16454194
EC_550
GCA_015160705.1ScaffoldJADDTJ000000000SAMN16454196
EC_1590
GCA_015160685.1ScaffoldJADDTH000000000SAMN16454198
EC_1608
GCA_015160665.1ScaffoldJADDTF000000000SAMN16454200
EC_1751
GCA_015160655.1ScaffoldJADDTI000000000SAMN16454197
EC_1593
GCA_015160635.1ScaffoldJADDTE000000000SAMN16454201
EC_1752
GCA_015160605.1ScaffoldJADDTC000000000SAMN16454203
EC_1516
GCA_015160595.1ScaffoldJADDTG000000000SAMN16454199
EC_1746
GCA_015160575.1ScaffoldJADDTD000000000SAMN16454202
EC_1763
GCA_015160535.1ScaffoldJADDSZ000000000SAMN16454206
EC_1395
GCA_015160545.1ScaffoldJADDSY000000000SAMN16454207
EC_1410
GCA_015160515.1ScaffoldJADDTB000000000SAMN16454204
EC_1372
GCA_015160495.1ScaffoldJADDTA000000000SAMN16454205
EC_1375
GCA_015160475.1ScaffoldJADDSX000000000SAMN16454208
EC_1385
GCA_015160445.1ScaffoldJADDSW000000000SAMN16454209
EC_1449
GCA_015160405.1ScaffoldJADDSU000000000SAMN16454211
EC_1459
GCA_015160395.1ScaffoldJADDSV000000000SAMN16454210
EC_1451
GCA_015160385.1ScaffoldJADDSS000000000SAMN16454213
EC_1618
GCA_015160375.1ScaffoldJADDSQ000000000SAMN16454169
EC_1631
GCA_015160355.1ScaffoldJADDST000000000SAMN16454212
EC_1488
GCA_015160325.1ScaffoldJADDSR000000000SAMN16454168
EC_1629
GCA_015160315.1ScaffoldJADDSN000000000SAMN16454172
EC_869
GCA_015160295.1ScaffoldJADDSP000000000SAMN16454170
EC_1661
GCA_015160255.1ScaffoldJADDSO000000000SAMN16454171
EC_1662
GCA_015160245.1ScaffoldJADDSL000000000SAMN16454174
EC_1496
GCA_015160235.1ScaffoldJADDSJ000000000SAMN16454176
EC_1741
GCA_015160215.1ScaffoldJADDSM000000000SAMN16454173
EC_1494
GCA_015160195.1ScaffoldJADDSH000000000SAMN16454178
EC_1747
GCA_015160175.1ScaffoldJADDSK000000000SAMN16454175
EC_1500
GCA_015160155.1ScaffoldJADDSI000000000SAMN16454177
EC_1742
GCA_015160085.1ScaffoldJADDSD000000000SAMN16454182
EC1_474
GCA_015160105.1ScaffoldJADDSG000000000SAMN16454179
EC_1753
GCA_015160095.1ScaffoldJADDSC000000000SAMN16454183
EC_1649
GCA_015160075.1ScaffoldJADDSF000000000SAMN16454180
EC_1401
GCA_015160055.1ScaffoldJADDSA000000000SAMN16454185
EC_1491
GCA_015160035.1ScaffoldJADDSE000000000SAMN16454181
EC_1402
GCA_015160015.1ScaffoldJADDSB000000000SAMN16454184
EC_1668
GCA_015159965.1ScaffoldJADDRX000000000SAMN16454162
SC_879916
GCA_015159955.1ScaffoldJADDRZ000000000SAMN16454186
EC_1492
GCA_015159975.1ScaffoldJADDRW000000000SAMN16454163
SC_875221
GCA_015159935.1ScaffoldJADDRY000000000SAMN16454187
EC_1493
GCA_015159915.1ScaffoldJADDRV000000000SAMN16454164
SC_927095
GCA_015159895.1ScaffoldJADDRT000000000SAMN16454166
SC_886340
GCA_011008755.1ScaffoldJAAIWJ000000000SAMN14115320
EC21
GCA_011008705.1ScaffoldJAAIWG000000000SAMN14115323
EC204
GCA_011008695.1ScaffoldJAAIWF000000000SAMN14115324
EC 5
GCA_011008665.1ScaffoldJAAIWA000000000SAMN14115329
EC 10
GCA_011008655.1ScaffoldJAAIWE000000000SAMN14115325
EC6
GCA_011008635.1ScaffoldJAAIWD000000000SAMN14115326
EC7
GCA_011008605.1ScaffoldJAAIWC000000000SAMN14115327
EC8
GCA_011008745.1ScaffoldJAAIWH000000000SAMN14115322
EC23
GCA_011008555.1ContigJAAIWI000000000SAMN14115321
EC22
GCA_007845015.1ScaffoldVODA00000000SAMN12290409
EC1662
GCA_007844985.1ScaffoldVOCW00000000SAMN12290413
927095
GCA_007845005.1ScaffoldVOCX00000000SAMN12290412
879916
GCA_007846645.1ScaffoldVOCZ00000000SAMN12290410
EC869
GCA_007846655.1ScaffoldVODJ00000000SAMN12290398
EC550
GCA_007846575.1ScaffoldVODC00000000SAMN12290407
EC1410
GCA_007846665.1ScaffoldVODB00000000SAMN12290408
EC1661
GCA_007846505.1ScaffoldVODE00000000SAMN12290405
EC1451
GCA_007846625.1ScaffoldVODD00000000SAMN12290406
EC1488
GCA_007846545.1ScaffoldVODH00000000SAMN12290400
EC1593
GCA_007846525.1ScaffoldVODI00000000SAMN12290399
EC1590
GCA_007846565.1ScaffoldVODF00000000SAMN12290404
EC1449
GCA_007846495.1ScaffoldVODG00000000SAMN12290403
EC1395
GCA_007858395.1ScaffoldVOCY00000000SAMN12290411
EC1493
SRA Data Details
ParameterValue
Data volume, Gbases28
Data volume, Mbytes15100

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    Escherichia coli
    Genome sequences of Shiga Toxin producing Escherichia coli that causes food-borne disease from food, clinical and environmental samplesand assembly
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