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Accession: PRJNA550338 ID: 550338

Escherichia coli

Escherichia coli Genome sequencing and assembly

See Genome Information for Escherichia coli
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9348 additional projects are related by organism.
The genome EC78 was sequenced using Illumina and Oxford Nanopore Technology methodology to characterize the blaTEM resistance genes during the study Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1.
AccessionPRJNA550338
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsHansen KH et al., "Resistance to piperacillin/tazobactam in Escherichia coli resulting from extensive IS26-associated gene amplification of blaTEM-1.", J Antimicrob Chemother, 2019 Nov 1;74(11):3179-3183
SubmissionRegistration date: 1-Aug-2019
Copenhagen University Hospital Hvidovre
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)1080
WGS master9
SRA Experiments10
Publications
PubMed1
Other datasets
BioSample9
Assembly9
Assembly details:
SRA Data Details
ParameterValue
Data volume, Gbases4
Data volume, Mbytes3113

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