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Genome Information for Cariama cristata
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The Red-legged Seriema is a predatory terrestial bird in the Cariamidae family. This assembly has been produced as part of the G10K-VGP project. Sequencing was conducted with Pacific long reads, Bionano optical maps, and 10X Genomics libraries at the Rockefeller University Vertebrate Genomes Lab led by Olivier Fedrigo, HiC at Arima Genomics, and Illumina sequencing at NovaGene. Genome assembly was conducted by the Olivier Fedrigo and Marcela Uliano da Silva, and supervised by Arang Rhie, using the VGP 1.5 pipeline. The primary haplotype was assembled to chromosomes, whereas the alternate just as contigs. Funding was raised by Tom Gilbert and Erich Jarvis from B10K contributors and HHMI. The raw data and assembly are currently under a G10K-VGP publication embargo until removed from this description, following the G10K data use policy at the following URL: https://genome10k.soe.ucsc.edu/data-use-policies/
| Accession | PRJNA562192 |
| Type | Umbrella project |
| Organism | Cariama cristata[Taxonomy ID: 54380] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda; Coelurosauria; Aves; Neognathae; Neoaves; Telluraves; Australaves; Cariamiformes; Cariamidae; Cariama; Cariama cristata |
| Submission | Registration date: 26-Aug-2019
Vertebrate Genomes Project |
| Relevance | Model Organism |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 55 |
| WGS master | 2 |
| SRA Experiments | 13 |
| Other datasets |
| BioSample | 1 |
| Assembly | 2 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds No data links Total |
1
1
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJNA561892 | Chromosomes | Cariama cristata | Cariama cristata (Red-legged seriema) genome, bCarCri1, primary haplotype (Vertebrate Genomes Project) | | PRJNA561893 | Scaffolds | Cariama cristata | Cariama cristata (Red-legged seriema) genome, bCarCri1, alternate haplotype (Vertebrate Genomes Project) | | PRJNA1125007 | No data links | Cariama cristata | Cariama cristata (Red-legged seriema) genome, bCarCri1, primary haplotype (NCBI) |
|