ID 576232 - BioProject

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Accession: PRJNA576232 ID: 576232

Diversity of Mycobacterium avium subsp. hominissuis in pigs in Japan

To clarify the distribution of Mycobacterium avium subs. hominissuis in Japan pig farm and to compare these MAH with MAH isolated from human.

Accession	PRJNA576232
Data Type	Genome sequencing and assembly
Scope	Multispecies
Grants	"Research grants for Meat and Meat Products" (Grant ID H28-130, H30-60, The Ito Foundation) "KAKENHI" (Grant ID JP26304039, Japan Society the Promotion of Science) "The JRA livestock industry promotion project" (Grant ID 28-29 239, Japan Racing Association) "Research Program on Emerging and Re-emerging infection" (Grant ID JP17fk0108116h0401, Japan Agency Medical Research and Development)
Submission	Registration date: 7-Oct-2019 Aichi Prefectural Chuo Livestock Hygiene Service Center

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	29
SRA Experiments	29
Other datasets
BioSample	29
Assembly	29

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

29
29

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_020055345.1	WEGY00000000	SAMN12984525	OCU486	Mycobacterium avium subsp. hominissuis
GCA_020055325.1	WEGZ00000000	SAMN12984524	OCU485	Mycobacterium avium subsp. hominissuis
GCA_020054575.1	WEHL00000000	SAMN12984512	OCU473	Mycobacterium avium subsp. hominissuis
GCA_020054555.1	WEHK00000000	SAMN12984513	OCU474	Mycobacterium avium subsp. hominissuis
GCA_020054515.1	WEHI00000000	SAMN12984515	OCU476	Mycobacterium avium subsp. hominissuis
GCA_020054535.1	WEHJ00000000	SAMN12984514	OCU475	Mycobacterium avium subsp. hominissuis
GCA_020055605.1	WEHQ00000000	SAMN12984507	OCU468	Mycobacterium avium subsp. hominissuis
GCA_020055585.1	WEHP00000000	SAMN12984508	OCU469	Mycobacterium avium subsp. hominissuis
GCA_020055565.1	WEHN00000000	SAMN12984510	OCU471	Mycobacterium avium subsp. hominissuis
GCA_020055545.1	WEHO00000000	SAMN12984509	OCU470	Mycobacterium avium subsp. hominissuis
GCA_020055525.1	WEHM00000000	SAMN12984511	OCU472	Mycobacterium avium subsp. hominissuis
GCA_020055495.1	WEHH00000000	SAMN12984516	OCU477	Mycobacterium avium subsp. hominissuis
GCA_020055485.1	WEHG00000000	SAMN12984517	OCU478	Mycobacterium avium subsp. hominissuis
GCA_020055465.1	WEHF00000000	SAMN12984518	OCU479	Mycobacterium avium subsp. hominissuis
GCA_020055375.1	WEHD00000000	SAMN12984520	OCU481	Mycobacterium avium subsp. hominissuis
GCA_020055445.1	WEHA00000000	SAMN12984523	OCU484	Mycobacterium avium subsp. hominissuis
GCA_020055405.1	WEHE00000000	SAMN12984519	OCU480	Mycobacterium avium subsp. hominissuis
GCA_020055385.1	WEHB00000000	SAMN12984522	OCU483	Mycobacterium avium subsp. hominissuis
GCA_020055365.1	WEHC00000000	SAMN12984521	OCU482	Mycobacterium avium subsp. hominissuis
GCA_020055285.1	WEGW00000000	SAMN12984527	GM10	Mycobacterium avium subsp. hominissuis
GCA_020055295.1	WEGX00000000	SAMN12984526	GM5	Mycobacterium avium subsp. hominissuis
GCA_020055245.1	WEGV00000000	SAMN12984528	GM12	Mycobacterium avium subsp. hominissuis
GCA_020055235.1	WEGT00000000	SAMN12984530	GM17	Mycobacterium avium subsp. hominissuis
GCA_020055225.1	WEGU00000000	SAMN12984529	GM16	Mycobacterium avium subsp. hominissuis
GCA_020055205.1	WEGQ00000000	SAMN12984533	GM44	Mycobacterium avium subsp. hominissuis
GCA_020055185.1	WEGR00000000	SAMN12984532	GM32	Mycobacterium avium subsp. hominissuis
GCA_020055145.1	WEGS00000000	SAMN12984531	GM21	Mycobacterium avium subsp. hominissuis
GCA_020055155.1	WEGP00000000	SAMN12984534	Toy194	Mycobacterium avium subsp. hominissuis
GCA_020055125.1	WEGO00000000	SAMN12984535	Toy195	Mycobacterium avium subsp. hominissuis

SRA Data Details

Parameter	Value
Data volume, Gbases	31
Data volume, Mbytes	13139

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Diversity of Mycobacterium avium subsp. hominissuis in pigs in Japan

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