WGS E. coli in Mongolian wild birds (ID 635337) - BioProject

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Accession: PRJEB36861 ID: 635337

WGS E. coli in Mongolian wild birds

Whole-genome sequencing of Escherichia coli strains obtained from Mongolian wild birds in 2017

The genome sequences of the Escherichia coli strains were obtained using Illumina sequencing by synthesis technology. Genomes were assembled with shovill/SPAdes.

Accession	PRJEB36861
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Publications	Schierack P et al., "Genomic and Phenotypic Analysis of an ESBL-Producing E. coli ST1159 Clonal Lineage From Wild Birds in Mongolia.", Front Microbiol, 2020;11:1699
Submission	Registration date: 27-May-2020 University of Greifswald, Institute of Pharmacy

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	5855
WGS master	50
SRA Experiments	51
Publications
PubMed	1
PMC	1
Other datasets
BioSample	50
Assembly	50

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

50
50

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_902859485.1	CADIIN000000000	SAMEA6638415	PBIO874	Escherichia coli
GCA_902859375.1	CADIIT000000000	SAMEA6638422	PBIO881	Escherichia coli
GCA_902859435.1	CADIIU000000000	SAMEA6638419	PBIO878	Escherichia coli
GCA_902859385.1	CADIIQ000000000	SAMEA6638418	PBIO877	Escherichia coli
GCA_902859365.1	CADIIY000000000	SAMEA6638429	PBIO888	Escherichia coli
GCA_902859395.1	CADIIM000000000	SAMEA6638424	PBIO883	Escherichia coli
GCA_902859355.1	CADIIZ000000000	SAMEA6638427	PBIO886	Escherichia coli
GCA_902859425.1	CADIIL000000000	SAMEA6638417	PBIO876	Escherichia coli
GCA_902859345.1	CADIIW000000000	SAMEA6638426	PBIO885	Escherichia coli
GCA_902859415.1	CADIIX000000000	SAMEA6638425	PBIO884	Escherichia coli
GCA_902859405.1	CADIIP000000000	SAMEA6638423	PBIO882	Escherichia coli
GCA_902859445.1	CADIIV000000000	SAMEA6638428	PBIO887	Escherichia coli
GCA_902859325.1	CADIHR000000000	SAMEA6638397	PBIO856	Escherichia coli
GCA_902859285.1	CADIIA000000000	SAMEA6638396	PBIO855	Escherichia coli
GCA_902859305.1	CADIIG000000000	SAMEA6638404	PBIO863	Escherichia coli
GCA_902859295.1	CADIIE000000000	SAMEA6638402	PBIO861	Escherichia coli
GCA_902859335.1	CADIIK000000000	SAMEA6638399	PBIO858	Escherichia coli
GCA_902859315.1	CADIIJ000000000	SAMEA6638403	PBIO862	Escherichia coli
GCA_902859215.1	CADIII000000000	SAMEA6638411	PBIO870	Escherichia coli
GCA_902859195.1	CADIHZ000000000	SAMEA6638407	PBIO866	Escherichia coli
GCA_902859155.1	CADIHT000000000	SAMEA6638414	PBIO873	Escherichia coli
GCA_902859145.1	CADIIB000000000	SAMEA6638405	PBIO864	Escherichia coli
GCA_902859175.1	CADIHS000000000	SAMEA6638401	PBIO860	Escherichia coli
GCA_902859235.1	CADIHY000000000	SAMEA6638410	PBIO869	Escherichia coli
GCA_902859275.1	CADIHW000000000	SAMEA6638398	PBIO857	Escherichia coli
GCA_902859225.1	CADIIH000000000	SAMEA6638412	PBIO871	Escherichia coli
GCA_902859245.1	CADIID000000000	SAMEA6638413	PBIO872	Escherichia coli
GCA_902859185.1	CADIHU000000000	SAMEA6638406	PBIO865	Escherichia coli
GCA_902859205.1	CADIIF000000000	SAMEA6638409	PBIO868	Escherichia coli
GCA_902859165.1	CADIHX000000000	SAMEA6638395	PBIO854	Escherichia coli
GCA_902859255.1	CADIHV000000000	SAMEA6638400	PBIO859	Escherichia coli
GCA_902859265.1	CADIIC000000000	SAMEA6638408	PBIO867	Escherichia coli
GCA_902859125.1	CADIHQ000000000	SAMEA6638388	PBIO847	Escherichia coli
GCA_902859135.1	CADIHL000000000	SAMEA6638386	PBIO845	Escherichia coli
GCA_902859105.1	CADIHK000000000	SAMEA6638383	PBIO842	Escherichia coli
GCA_902859085.1	CADIHN000000000	SAMEA6638381	PBIO840	Escherichia coli
GCA_902859055.1	CADIHJ000000000	SAMEA6638384	PBIO843	Escherichia coli
GCA_902859095.1	CADIHM000000000	SAMEA6638385	PBIO844	Escherichia coli
GCA_902859075.1	CADIHI000000000	SAMEA6638389	PBIO848	Escherichia coli
GCA_902859065.1	CADIHO000000000	SAMEA6638387	PBIO846	Escherichia coli
GCA_902859115.1	CADIHP000000000	SAMEA6638382	PBIO841	Escherichia coli
GCA_902859455.1	CADIIS000000000	SAMEA6638420	PBIO879	Escherichia coli
GCA_902859475.1	CADIIR000000000	SAMEA6638430	PBIO1289	Escherichia coli
GCA_902859545.1	CADIJE000000000	SAMEA6638391	PBIO850	Escherichia coli
GCA_902859505.1	CADIJB000000000	SAMEA6638394	PBIO853	Escherichia coli
GCA_902859495.1	CADIJA000000000	SAMEA6638421	PBIO880	Escherichia coli
GCA_902859465.1	CADIIO000000000	SAMEA6638416	PBIO875	Escherichia coli
GCA_902859525.1	CADIJC000000000	SAMEA6638390	PBIO849	Escherichia coli
GCA_902859535.1	CADIJF000000000	SAMEA6638392	PBIO851	Escherichia coli
GCA_902859515.1	CADIJD000000000	SAMEA6638393	PBIO852	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	21
Data volume, Mbytes	11498

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WGS E. coli in Mongolian wild birds

Whole-genome sequencing of Escherichia coli strains obtained from Mongolian wild birds in 2017

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