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Accession: PRJNA647545 ID: 647545

mouse metagenome

Microbiome and gene expression analysis in ApcMin/+C3arKO, C3arKO and WT mice

We investigated the microbiome profile in a spontaneous mouse model of colorectal cancer that we developed in the laboratory: the ApcMin/+C3arKO mice. More...
AccessionPRJNA647545
Data TypeRaw sequence reads, Assembly
ScopeEnvironment
Organismmouse metagenome[Taxonomy ID: 1441287]
unclassified sequences; metagenomes; organismal metagenomes; mouse metagenome
PublicationsBertocchi A et al., "Gut vascular barrier impairment leads to intestinal bacteria dissemination and colorectal cancer metastasis to liver.", Cancer Cell, 2021 May 10;39(5):708-724.e11
SubmissionRegistration date: 21-Jul-2020
Humanitas Research Hospital
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)4
SRA Experiments59
Publications
PubMed1
Other datasets
BioSample63
Assembly4
SRA Data Details
ParameterValue
Data volume, Gbases16
Data volume, Mbytes6568

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    Microbiome and gene expression analysis in ApcMin/+C3arKO, C3arKO and WT mice
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