human skin metagenome (ID 649052) - BioProject

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Accession: PRJNA649052 ID: 649052

human skin metagenome

Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients

Actinic keratoses (AK) arise in severely photo-damaged skin and, over time, can progress to squamous cell carcinomas (SCC). More...

Accession	PRJNA649052
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	human skin metagenome[Taxonomy ID: 539655] unclassified sequences; metagenomes; organismal metagenomes; human skin metagenome
Submission	Registration date: 6-Nov-2020 University of Queensland
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	108
SRA Experiments	581
Other datasets
BioSample	581
Assembly	108

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

108
108

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_015273065.1	JACGRV000000000	SAMN15665312	R5974	Staphylococcus aureus
GCA_015273035.1	JACGRX000000000	SAMN15665314	R5976	Staphylococcus aureus
GCA_015273015.1	JACGRW000000000	SAMN15665313	R5975	Staphylococcus aureus
GCA_015272975.1	JACGRY000000000	SAMN15665315	R5977	Staphylococcus aureus
GCA_015272965.1	JACGRZ000000000	SAMN15665316	R5978	Staphylococcus aureus
GCA_015272955.1	JACGSA000000000	SAMN15665317	R5979	Staphylococcus aureus
GCA_015272895.1	JACGSB000000000	SAMN15665318	SB9598	Staphylococcus aureus
GCA_015274185.1	JACGPS000000000	SAMN15665255	R6023	Staphylococcus capitis
GCA_015274115.1	JACGPV000000000	SAMN15665258	R6026	Staphylococcus capitis
GCA_015274095.1	JACGPY000000000	SAMN15665261	R5942	Staphylococcus capitis
GCA_015274055.1	JACGPZ000000000	SAMN15665262	R5943	Staphylococcus capitis
GCA_015274025.1	JACGQA000000000	SAMN15665263	R5944	Staphylococcus capitis
GCA_015273995.1	JACGQC000000000	SAMN15665265	R5946	Staphylococcus capitis
GCA_015273985.1	JACGQB000000000	SAMN15665264	R5945	Staphylococcus capitis
GCA_015273975.1	JACGQE000000000	SAMN15665267	R6012	Staphylococcus capitis
GCA_015273955.1	JACGQD000000000	SAMN15665266	R5947	Staphylococcus capitis
GCA_015273915.1	JACGQF000000000	SAMN15665268	R6013	Staphylococcus capitis
GCA_015273895.1	JACGQG000000000	SAMN15665269	R5986	Staphylococcus epidermidis
GCA_015273875.1	JACGQH000000000	SAMN15665270	R5987	Staphylococcus epidermidis
GCA_015273865.1	JACGQI000000000	SAMN15665271	R5988	Staphylococcus epidermidis
GCA_015273855.1	JACGQJ000000000	SAMN15665272	R5989	Staphylococcus epidermidis
GCA_015273815.1	JACGQK000000000	SAMN15665273	R5948	Staphylococcus epidermidis
GCA_015273805.1	JACGQL000000000	SAMN15665274	R5949	Staphylococcus epidermidis
GCA_015273785.1	JACGQM000000000	SAMN15665275	R5950	Staphylococcus epidermidis
GCA_015274625.1	JACGOW000000000	SAMN15665233	R6007	Staphylococcus epidermidis
GCA_015274615.1	JACGOX000000000	SAMN15665234	R6008	Staphylococcus epidermidis
GCA_015274575.1	JACGOY000000000	SAMN15665235	R6009	Staphylococcus epidermidis
GCA_015274555.1	JACGPB000000000	SAMN15665238	R6038	Staphylococcus epidermidis
GCA_015274505.1	JACGPC000000000	SAMN15665239	R6039	Staphylococcus epidermidis
GCA_015274485.1	JACGPE000000000	SAMN15665241	R6041	Staphylococcus epidermidis
GCA_015274475.1	JACGPF000000000	SAMN15665242	R6033	Staphylococcus epidermidis
GCA_015274455.1	JACGPD000000000	SAMN15665240	R6040	Staphylococcus epidermidis
GCA_015274425.1	JACGPG000000000	SAMN15665243	R6034	Staphylococcus epidermidis
GCA_015274355.1	JACGPK000000000	SAMN15665247	R6047	Staphylococcus epidermidis
GCA_015274325.1	JACGPL000000000	SAMN15665248	R6048	Staphylococcus epidermidis
GCA_015274285.1	JACGPN000000000	SAMN15665250	R6050	Staphylococcus epidermidis
GCA_015274275.1	JACGPM000000000	SAMN15665249	R6049	Staphylococcus epidermidis
GCA_015274265.1	JACGPO000000000	SAMN15665251	R6029	Staphylococcus epidermidis
GCA_015274255.1	JACGPP000000000	SAMN15665252	R6030	Staphylococcus epidermidis
GCA_015274235.1	JACGPQ000000000	SAMN15665253	R6031	Staphylococcus epidermidis
GCA_015274195.1	JACGPR000000000	SAMN15665254	R6032	Staphylococcus epidermidis
GCA_015274385.1	JACGPH000000000	SAMN15665244	R6035	Staphylococcus epidermidis
GCA_015273605.1	JACGQT000000000	SAMN15665284	R5985	Staphylococcus epidermidis
GCA_015273595.1	JACGQV000000000	SAMN15665286	R6003	Staphylococcus epidermidis
GCA_015273585.1	JACGQR000000000	SAMN15665282	R5983	Staphylococcus epidermidis
GCA_015273575.1	JACGQU000000000	SAMN15665285	R6002	Staphylococcus epidermidis
GCA_015273385.1	JACGRF000000000	SAMN15665296	R5995	Staphylococcus epidermidis
GCA_015273365.1	JACGRE000000000	SAMN15665295	R5994	Staphylococcus epidermidis
GCA_015273345.1	JACGRH000000000	SAMN15665298	R5981	Staphylococcus epidermidis
GCA_015273655.1	JACGQS000000000	SAMN15665283	R5984	Staphylococcus epidermidis
GCA_015273665.1	JACGQQ000000000	SAMN15665281	R5982	Staphylococcus epidermidis
GCA_015273735.1	JACGQP000000000	SAMN15665280	R5955	Staphylococcus epidermidis
GCA_015273535.1	JACGQW000000000	SAMN15665287	R6004	Staphylococcus epidermidis
GCA_015273525.1	JACGQX000000000	SAMN15665288	R6005	Staphylococcus epidermidis
GCA_015273505.1	JACGQY000000000	SAMN15665289	R6006	Staphylococcus epidermidis
GCA_015273495.1	JACGQZ000000000	SAMN15665290	SB9605	Staphylococcus epidermidis
GCA_015273045.1	JACGRU000000000	SAMN15665311	R5962	Staphylococcus epidermidis
GCA_015273105.1	JACGRS000000000	SAMN15665309	R5960	Staphylococcus epidermidis
GCA_015273085.1	JACGRT000000000	SAMN15665310	R5961	Staphylococcus epidermidis
GCA_015273145.1	JACGRP000000000	SAMN15665306	R5957	Staphylococcus epidermidis
GCA_015273135.1	JACGRR000000000	SAMN15665308	R5959	Staphylococcus epidermidis
GCA_015273245.1	JACGRL000000000	SAMN15665302	R5971	Staphylococcus epidermidis
GCA_015273235.1	JACGRM000000000	SAMN15665303	R5972	Staphylococcus epidermidis
GCA_015273195.1	JACGRO000000000	SAMN15665305	R5956	Staphylococcus epidermidis
GCA_015273185.1	JACGRQ000000000	SAMN15665307	R5958	Staphylococcus epidermidis
GCA_015273175.1	JACGRN000000000	SAMN15665304	R5973	Staphylococcus epidermidis
GCA_015273295.1	JACGRJ000000000	SAMN15665300	R5969	Staphylococcus epidermidis
GCA_015273275.1	JACGRK000000000	SAMN15665301	R5970	Staphylococcus epidermidis
GCA_015273285.1	JACGRI000000000	SAMN15665299	R5968	Staphylococcus epidermidis
GCA_015273335.1	JACGRG000000000	SAMN15665297	R5980	Staphylococcus epidermidis
GCA_015273415.1	JACGRD000000000	SAMN15665294	R5993	Staphylococcus epidermidis
GCA_015274155.1	JACGPU000000000	SAMN15665257	R6025	Staphylococcus epidermidis
GCA_015274795.1	JACGOQ000000000	SAMN15665227	R6053	Staphylococcus epidermidis
GCA_015274775.1	JACGOR000000000	SAMN15665228	R6054	Staphylococcus epidermidis
GCA_015274785.1	JACGOS000000000	SAMN15665229	R6014	Staphylococcus epidermidis
GCA_015274905.1	JACGOP000000000	SAMN15665226	R6052	Staphylococcus epidermidis
GCA_015274835.1	JACGOO000000000	SAMN15665225	R6051	Staphylococcus epidermidis
GCA_015274735.1	JACGOT000000000	SAMN15665230	R6015	Staphylococcus epidermidis
GCA_015273715.1	JACMRV000000000	SAMN15665278	R5953	Staphylococcus haemolyticus
GCA_015273685.1	JACMRU000000000	SAMN15665279	R5954	Staphylococcus haemolyticus
GCA_015274365.1	JACGPJ000000000	SAMN15665246	R6037	Staphylococcus haemolyticus
GCA_015274415.1	JACGPI000000000	SAMN15665245	R6036	Staphylococcus haemolyticus
GCA_015273775.1	JACGQN000000000	SAMN15665276	R5951	Staphylococcus haemolyticus
GCA_015273745.1	JACGQO000000000	SAMN15665277	R5952	Staphylococcus haemolyticus
GCA_015274535.1	JACGPA000000000	SAMN15665237	R6011	Staphylococcus hominis
GCA_015274585.1	JACGOZ000000000	SAMN15665236	R6010	Staphylococcus hominis
GCA_015274655.1	JACGOV000000000	SAMN15665232	R6017	Staphylococcus hominis
GCA_015274675.1	JACGOU000000000	SAMN15665231	R6016	Staphylococcus hominis
GCA_015272925.1	JACGSD000000000	SAMN15665320	R5964	Staphylococcus schleiferi
GCA_015272905.1	JACGSC000000000	SAMN15665319	R5963	Staphylococcus schleiferi
GCA_015272875.1	JACGSG000000000	SAMN15665323	R5967	Staphylococcus schleiferi
GCA_015272815.1	JACGSF000000000	SAMN15665322	R5966	Staphylococcus schleiferi
GCA_015272835.1	JACGSE000000000	SAMN15665321	R5965	Staphylococcus schleiferi
GCA_015272805.1	JACGSI000000000	SAMN15665325	R6043	Staphylococcus schleiferi
GCA_015272795.1	JACGSH000000000	SAMN15665324	R6042	Staphylococcus schleiferi
GCA_015272755.1	JACGSJ000000000	SAMN15665326	R6044	Staphylococcus schleiferi
GCA_015272745.1	JACGSK000000000	SAMN15665327	R6045	Staphylococcus schleiferi
GCA_015272735.1	JACGSL000000000	SAMN15665328	R6046	Staphylococcus schleiferi
GCA_015272705.1	JACGSM000000000	SAMN15665329	R6055	Staphylococcus schleiferi
GCA_015272695.1	JACGSN000000000	SAMN15665330	R6056	Staphylococcus schleiferi
GCA_015272665.1	JACGSO000000000	SAMN15665331	R6057	Staphylococcus schleiferi
GCA_015272655.1	JACGSP000000000	SAMN15665332	R6058	Staphylococcus schleiferi
GCA_015273425.1	JACGRB000000000	SAMN15665292	R5991	Staphylococcus warneri
GCA_015274175.1	JACGPT000000000	SAMN15665256	R6024	Staphylococcus warneri
GCA_015274065.1	JACGPX000000000	SAMN15665260	R6028	Staphylococcus warneri
GCA_015274105.1	JACGPW000000000	SAMN15665259	R6027	Staphylococcus warneri
GCA_015273475.1	JACGRA000000000	SAMN15665291	R5990	Staphylococcus warneri
GCA_015273445.1	JACGRC000000000	SAMN15665293	R5992	Staphylococcus warneri

SRA Data Details

Parameter	Value
Data volume, Gbases	122
Data volume, Mbytes	61286

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human skin metagenome

Changes in the skin microbiome associated with squamous cell carcinoma in transplant recipients

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