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Accession: PRJNA688628 ID: 688628

Population genomics and Antimicrobial Resistance of Escherichia coli strains

Population genomics and Antimicrobial Resistance of Escherichia coli strains from pig farms in China
AccessionPRJNA688628
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 30-Dec-2020
Huazhong Agricultural University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)527
WGS master518
Genomic DNA9
Protein Sequences4960
Other datasets
BioSample519
Assembly519
Assembly details:
Assembly levelNumber of Assemblies
1
518
519
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_019376055.1ContigJAEOLT000000000
SAMN17183518
HUNS46
GCA_019376035.1ContigJAEOLR000000000
SAMN17183516
HUNS33
GCA_019375435.1ContigJAENBN000000000
SAMN17183740
SC1
GCA_019375445.1ContigJAEPWK000000000
SAMN17183422
HB22
GCA_019375395.1ContigJAENBL000000000
SAMN17183742
SC3
GCA_019375375.1ContigJAENBM000000000
SAMN17183741
SC10
GCA_019375355.1ContigJAENBE000000000
SAMN17183749
SD16
GCA_019375325.1ContigJAENBF000000000
SAMN17183748
SD15
GCA_019375315.1ContigJAENBB000000000
SAMN17183752
SD23
GCA_019375285.1ContigJAENBC000000000
SAMN17183751
SD21
GCA_019375275.1ContigJAENBD000000000
SAMN17183750
SD2
GCA_019375255.1ContigJAENBA000000000
SAMN17183753
SD26
GCA_019375235.1ContigJAENAZ000000000
SAMN17183754
SD28
GCA_019375195.1ContigJAENAW000000000
SAMN17183757
SD36
GCA_019375185.1ContigJAENAX000000000
SAMN17183756
SD35
GCA_019375175.1ContigJAENAY000000000
SAMN17183755
SD30
GCA_019375145.1ContigJAENHE000000000
SAMN17183761
SD5
GCA_019366455.1ContigJAEOIE000000000
SAMN17183424
HB24
GCA_019366445.1ContigJAEOIC000000000
SAMN17183421
HB17
GCA_019366415.1ContigJAEOIF000000000
SAMN17183425
HB27
GCA_019366395.1ContigJAEOIG000000000
SAMN17183426
HB28
GCA_019366385.1ContigJAEOID000000000
SAMN17183423
HB23
GCA_019366355.1ContigJAEOIK000000000
SAMN17183430
HB33
GCA_019366335.1ContigJAEOIH000000000
SAMN17183427
HB29
GCA_019366325.1ContigJAEOIJ000000000
SAMN17183429
HB30
GCA_019366285.1ContigJAEOIL000000000
SAMN17183431
HB36
GCA_019366295.1ContigJAEOII000000000
SAMN17183428
HB3
GCA_019366265.1ContigJAEOIM000000000
SAMN17183432
HB37
GCA_019366245.1ContigJAEOIO000000000
SAMN17183435
HB42
GCA_019366215.1ContigJAEOIN000000000
SAMN17183433
HB38
GCA_019366205.1ContigJAEOIP000000000
SAMN17183436
HB44
GCA_019366185.1ContigJAEOIQ000000000
SAMN17183437
HB45
GCA_019366165.1ContigJAEOIR000000000
SAMN17183438
HB50
GCA_019366145.1ContigJAEOIT000000000
SAMN17183440
HB55
GCA_019366115.1ContigJAEOIS000000000
SAMN17183439
HB53
GCA_019366105.1ContigJAEOIU000000000
SAMN17183441
HB6
GCA_019366085.1ContigJAEOIV000000000
SAMN17183442
HB61
GCA_019366055.1ContigJAEOJF000000000
SAMN17183452
HUBJ22
GCA_019366045.1ContigJAEOJK000000000
SAMN17183457
HUBJ8
GCA_019366025.1ContigJAEOJL000000000
SAMN17183458
HUBS21
GCA_019366005.1ContigJAEOJM000000000
SAMN17183459
HUBS24
GCA_019365985.1ContigJAEOJN000000000
SAMN17183460
HUBS28
GCA_019365965.1ContigJAEOJO000000000
SAMN17183461
HUBS36
GCA_019365945.1ContigJAEOJP000000000
SAMN17183462
HUBS37
GCA_019365925.1ContigJAEOJQ000000000
SAMN17183463
HUBS5
GCA_019365905.1ContigJAEOJR000000000
SAMN17183464
HUN101
GCA_019365885.1ContigJAEOJT000000000
SAMN17183466
HUN105
GCA_019365865.1ContigJAEOJS000000000
SAMN17183465
HUN103
GCA_019365835.1ContigJAEOJU000000000
SAMN17183467
HUN107
GCA_019365825.1ContigJAEOJV000000000
SAMN17183468
HUN108
GCA_019365805.1ContigJAEOJW000000000
SAMN17183469
HUN109
GCA_019365755.1ContigJAEOJZ000000000
SAMN17183472
HUN112
GCA_019365765.1ContigJAEOJX000000000
SAMN17183470
HUN11
GCA_019365745.1ContigJAEOJY000000000
SAMN17183471
HUN111
GCA_019365725.1ContigJAEOKA000000000
SAMN17183473
HUN113
GCA_019365705.1ContigJAEOKB000000000
SAMN17183474
HUN115
GCA_019365685.1ContigJAEOKC000000000
SAMN17183475
HUN127
GCA_019365665.1ContigJAEOKD000000000
SAMN17183476
HUN128
GCA_019365635.1ContigJAEOKE000000000
SAMN17183477
HUN129
GCA_019365615.1ContigJAEOKF000000000
SAMN17183478
HUN13
GCA_019365585.1ContigJAEOKG000000000
SAMN17183479
HUN14
GCA_019365575.1ContigJAEOKH000000000
SAMN17183480
HUN15
GCA_019365545.1ContigJAEOKJ000000000
SAMN17183482
HUN18
GCA_019365535.1ContigJAEOKI000000000
SAMN17183481
HUN16
GCA_019365505.1ContigJAEOKK000000000
SAMN17183483
HUN19
GCA_019365495.1ContigJAEOKL000000000
SAMN17183484
HUN20
GCA_019365475.1ContigJAEOKN000000000
SAMN17183486
HUN24
GCA_019365455.1ContigJAEOKM000000000
SAMN17183485
HUN23
GCA_019365425.1ContigJAEOKO000000000
SAMN17183487
HUN26
GCA_019365405.1ContigJAEOKP000000000
SAMN17183488
HUN27
GCA_019365375.1ContigJAEOKQ000000000
SAMN17183489
HUN29
GCA_019365365.1ContigJAEOKR000000000
SAMN17183490
HUN38
GCA_019365345.1ContigJAEOKU000000000
SAMN17183493
HUN45
GCA_019365315.1ContigJAEOKT000000000
SAMN17183492
HUN4
GCA_019365305.1ContigJAEOKS000000000
SAMN17183491
HUN39
GCA_019365285.1ContigJAEOKV000000000
SAMN17183494
HUN49
GCA_019365265.1ContigJAEOKW000000000
SAMN17183495
HUN50
GCA_019365235.1ContigJAEOKX000000000
SAMN17183496
HUN56
GCA_019365225.1ContigJAEOKY000000000
SAMN17183497
HUN58
GCA_019365205.1ContigJAEOKZ000000000
SAMN17183498
HUN59
GCA_019365185.1ContigJAEOLB000000000
SAMN17183500
HUN71
GCA_019365145.1ContigJAEOLD000000000
SAMN17183502
HUN75
GCA_019365135.1ContigJAEOLA000000000
SAMN17183499
HUN7
GCA_019365125.1ContigJAEOLC000000000
SAMN17183501
HUN72
GCA_019365105.1ContigJAEOLE000000000
SAMN17183503
HUN77
GCA_019365085.1ContigJAEOLG000000000
SAMN17183505
HUN8
GCA_019365065.1ContigJAEOLI000000000
SAMN17183507
HUN82
GCA_019365025.1ContigJAEOLF000000000
SAMN17183504
HUN78
GCA_019365035.1ContigJAEOLJ000000000
SAMN17183508
HUN83
GCA_019365005.1ContigJAEOLH000000000
SAMN17183506
HUN80
GCA_019364985.1ContigJAEOLK000000000
SAMN17183509
HUN84
GCA_019364945.1ContigJAEOMC000000000
SAMN17183529
JX21
GCA_019364955.1ContigJAEOMB000000000
SAMN17183526
JX18
GCA_019364905.1ContigJAEOLM000000000
SAMN17183511
HUN9
GCA_019364915.1ContigJAEOMD000000000
SAMN17183530
JX23
GCA_019364885.1ContigJAEOMG000000000
SAMN17183533
JX38
GCA_019364865.1ContigJAEOMI000000000
SAMN17183535
JX4
GCA_019364805.1ContigJAEOMF000000000
SAMN17183532
JX26
GCA_019364825.1ContigJAEOMH000000000
SAMN17183534
JX39
GCA_019364815.1ContigJAEOME000000000
SAMN17183531
JX25
GCA_019374975.1ContigJAENHA000000000
SAMN17183824
XD38
GCA_019374955.1ContigJAEOIW000000000
SAMN17183443
HB64
GCA_019374935.1ContigJAEPWL000000000
SAMN17183434
HB4
GCA_019374915.1ContigJAEOIX000000000
SAMN17183444
HB84
GCA_019374895.1ContigJAEOIY000000000
SAMN17183445
HLJ34
GCA_019374875.1ContigJAEOIZ000000000
SAMN17183446
HLJ5
GCA_019374845.1ContigJAEOJA000000000
SAMN17183447
HLJ64
GCA_019374825.1ContigJAEOJB000000000
SAMN17183448
HN15
GCA_019374815.1ContigJAEOJC000000000
SAMN17183449
HUBJ12
GCA_019374785.1ContigJAEOJD000000000
SAMN17183450
HUBJ16
GCA_019374775.1ContigJAEOJG000000000
SAMN17183453
HUBJ24
GCA_019374755.1ContigJAEOJE000000000
SAMN17183451
HUBJ20
GCA_019374705.1ContigJAEOJH000000000
SAMN17183454
HUBJ25
GCA_019374725.1ContigJAEOJI000000000
SAMN17183455
HUBJ28
GCA_019374695.1ContigJAEOLN000000000
SAMN17183512
HUN92
GCA_019374675.1ContigJAEOLL000000000
SAMN17183510
HUN89
GCA_019374655.1ContigJAEOJJ000000000
SAMN17183456
HUBJ30
GCA_019374635.1ContigJAEOLO000000000
SAMN17183513
HUN94
GCA_019374575.1ContigJAEOLQ000000000
SAMN17183515
HUNS32
GCA_019374585.1ContigJAEOLS000000000
SAMN17183517
HUNS34
GCA_019374595.1ContigJAEOLP000000000
SAMN17183514
HUNJ27
GCA_019374535.1ContigJAEOLU000000000
SAMN17183519
HUNS48
GCA_019374515.1ContigJAEOLW000000000
SAMN17183521
JS77
GCA_019374445.1ContigJAEOLZ000000000
SAMN17183524
JX13
GCA_019374495.1ContigJAEOLV000000000
SAMN17183520
JL33
GCA_019374455.1ContigJAEOLX000000000
SAMN17183522
JX10
GCA_019374435.1ContigJAEOLY000000000
SAMN17183523
JX12
GCA_019374405.1ContigJAEOMK000000000
SAMN17183537
JX42
GCA_019374395.1ContigJAEOMA000000000
SAMN17183525
JX16
GCA_019374375.1ContigJAEOMJ000000000
SAMN17183536
JX40
GCA_019374355.1ContigJAEOML000000000
SAMN17183538
JX45
GCA_019374325.1ContigJAEOMN000000000
SAMN17183540
LN13
GCA_019374315.1ContigJAEOMM000000000
SAMN17183539
LN10
GCA_019374285.1ContigJAEOMP000000000
SAMN17183542
LN35
GCA_019374275.1ContigJAEOMO000000000
SAMN17183541
LN32
GCA_019374255.1ContigJAEOMQ000000000
SAMN17183543
LN36
GCA_019374235.1ContigJAEOMR000000000
SAMN17183544
LN42
GCA_019374195.1ContigJAEOMT000000000
SAMN17183546
LN44
GCA_019374185.1ContigJAEOMU000000000
SAMN17183547
LN59
GCA_019374175.1ContigJAEOMS000000000
SAMN17183545
LN43
GCA_019374155.1ContigJAEOMV000000000
SAMN17183548
LN62
GCA_019374135.1ContigJAEOMW000000000
SAMN17183549
LN64
GCA_019374075.1ContigJAEONA000000000
SAMN17183553
LN75
GCA_019374085.1ContigJAEOMZ000000000
SAMN17183552
LN74
GCA_019374065.1ContigJAEOMY000000000
SAMN17183551
LN73
GCA_019374055.1ContigJAEOMX000000000
SAMN17183550
LN69
GCA_019374035.1ContigJAEONB000000000
SAMN17183554
NMG10
GCA_019374005.1ContigJAEONC000000000
SAMN17183555
NMG12
GCA_019373975.1ContigJAEOND000000000
SAMN17183556
NMG22
GCA_019373965.1ContigJAEONE000000000
SAMN17183557
NMG24
GCA_019373955.1ContigJAEONF000000000
SAMN17183558
NMG25
GCA_019373935.1ContigJAEONG000000000
SAMN17183559
NMG29
GCA_019373905.1ContigJAEONH000000000
SAMN17183560
NMG3
GCA_019373885.1ContigJAEONJ000000000
SAMN17183562
NMG39
GCA_019373875.1ContigJAEONI000000000
SAMN17183561
NMG32
GCA_019373855.1ContigJAEONL000000000
SAMN17183564
NMG46
GCA_019373835.1ContigJAEONK000000000
SAMN17183563
NMG42
GCA_019373795.1ContigJAEONN000000000
SAMN17183566
NMG48
GCA_019373785.1ContigJAEONM000000000
SAMN17183565
NMG47
GCA_019373745.1ContigJAEONP000000000
SAMN17183568
NMG5
GCA_019373725.1ContigJAEONR000000000
SAMN17183570
NMG6
GCA_019373735.1ContigJAEONO000000000
SAMN17183567
NMG49
GCA_019373705.1ContigJAEONQ000000000
SAMN17183569
NMG50
GCA_019373685.1ContigJAEONT000000000
SAMN17183572
NMG8
GCA_019373645.1ContigJAEONS000000000
SAMN17183571
NMG7
GCA_019373635.1ContigJAEONV000000000
SAMN17183574
NX2
GCA_019373625.1ContigJAEONU000000000
SAMN17183573
NMG9
GCA_019373605.1ContigJAEONW000000000
SAMN17183575
NX28
GCA_019373575.1ContigJAEONZ000000000
SAMN17183578
QH12
GCA_019373555.1ContigJAEOOA000000000
SAMN17183579
QH13
GCA_019373545.1ContigJAEONY000000000
SAMN17183577
QH10
GCA_019373525.1ContigJAEONX000000000
SAMN17183576
QH1
GCA_019373505.1ContigJAEOOB000000000
SAMN17183580
QH17
GCA_019373475.1ContigJAEOOD000000000
SAMN17183582
QH2
GCA_019373465.1ContigJAEOOC000000000
SAMN17183581
QH18
GCA_019373445.1ContigJAEOOG000000000
SAMN17183585
QH5
GCA_019373425.1ContigJAEOOE000000000
SAMN17183583
QH3
GCA_019373405.1ContigJAEOOF000000000
SAMN17183584
QH4
GCA_019373385.1ContigJAEOOH000000000
SAMN17183586
QH6
GCA_019373305.1ContigJAEOOM000000000
SAMN17183591
S104
GCA_019373335.1ContigJAEOOI000000000
SAMN17183587
QH7
GCA_019373325.1ContigJAEOOJ000000000
SAMN17183588
QH8
GCA_019373315.1ContigJAEOOK000000000
SAMN17183589
QH9
GCA_019373285.1ContigJAEOOL000000000
SAMN17183590
S103
GCA_019373245.1ContigJAEOOO000000000
SAMN17183593
S158
GCA_019373255.1ContigJAEOON000000000
SAMN17183592
S147
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SAMN17183594
S180
GCA_019373195.1ContigJAEOOR000000000
SAMN17183596
S182
GCA_019373185.1ContigJAEOOQ000000000
SAMN17183595
S181
GCA_019373165.1ContigJAEOOS000000000
SAMN17183597
S191
GCA_019373145.1ContigJAEOOT000000000
SAMN17183598
S192
GCA_019373125.1ContigJAEOOV000000000
SAMN17183600
S194
GCA_019373105.1ContigJAEOOU000000000
SAMN17183599
S193
GCA_019373085.1ContigJAEOOW000000000
SAMN17183601
S195
GCA_019373065.1ContigJAEOOX000000000
SAMN17183602
S196
GCA_019373045.1ContigJAEOOY000000000
SAMN17183603
S198
GCA_019373025.1ContigJAEOOZ000000000
SAMN17183604
S199
GCA_019373005.1ContigJAEOPB000000000
SAMN17183606
S201
GCA_019372985.1ContigJAEOPA000000000
SAMN17183605
S200
GCA_019372955.1ContigJAEOPC000000000
SAMN17183607
S203
GCA_019372945.1ContigJAEOPD000000000
SAMN17183608
S204
GCA_019372925.1ContigJAEOPE000000000
SAMN17183609
S205
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SAMN17183610
S206
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SAMN17183611
S208
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SAMN17183612
S210
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SAMN17183614
S212
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SAMN17183613
S211
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SAMN17183615
S47
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SAMN17183616
S49
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SAMN17183619
S56
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S52
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S57
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S51
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S67
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S82
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S88
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SAMN17183633
S89
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S91
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SAMN17183635
S95
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SAMN17183637
S99
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SAMN17183636
S98
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SAMN17183638
SAX11
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SAMN17183639
SAX15
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SAMN17183640
SAX16
GCA_019372285.1ContigJAEOQK000000000
SAMN17183641
SAX2
GCA_019372255.1ContigJAEOQL000000000
SAMN17183642
SAX21
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SAMN17183643
SAX22
GCA_019372225.1ContigJAEOQN000000000
SAMN17183644
SAX32
GCA_019372205.1ContigJAEOQO000000000
SAMN17183645
SAX35
GCA_019372185.1ContigJAEOQP000000000
SAMN17183646
SAX4
GCA_019372145.1ContigJAEOQR000000000
SAMN17183648
SAX6
GCA_019372155.1ContigJAEOQQ000000000
SAMN17183647
SAX40
GCA_019372125.1ContigJAENBK000000000
SAMN17183743
SC4
GCA_019372105.1ContigJAENBJ000000000
SAMN17183744
SD1
GCA_019372085.1ContigJAENBI000000000
SAMN17183745
SD10
GCA_019372055.1ContigJAENBG000000000
SAMN17183747
SD12
GCA_019372045.1ContigJAENBH000000000
SAMN17183746
SD11
GCA_019372025.1ContigJAENAU000000000
SAMN17183759
SD38
GCA_019372005.1ContigJAENAV000000000
SAMN17183758
SD37
GCA_019371965.1ContigJAENAS000000000
SAMN17183762
SD58
GCA_019371975.1ContigJAENAT000000000
SAMN17183760
SD40
GCA_019371945.1ContigJAENAR000000000
SAMN17183763
SD7
GCA_019371915.1ContigJAENAQ000000000
SAMN17183764
SH22
GCA_019371905.1ContigJAENAP000000000
SAMN17183765
SH30
GCA_019371885.1ContigJAENAO000000000
SAMN17183766
SH36
GCA_019371865.1ContigJAENAN000000000
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SH40
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YN17
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YN22
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YN19
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YN20
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ZJ1
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YN33
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YN34
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ZJ20
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YN39
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AH22
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AH24
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AH88
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AH91
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BJ21
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BJ25
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CQ14
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CQ17
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CQ27
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CQ28
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CQ29
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CQ3
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CQ31
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CQ32
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CQ30
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CQ33
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CQ34
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CQ35
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CQ36
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CQ42
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CQ4
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CQ46
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CQ48
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CQ52
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CQ51
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CQ63
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CQ59
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CQ66
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CQ7
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CQ67
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CQ72
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CQ69
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CQ73
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CQ77
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CQ78
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CQ74
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CQ75
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SAMN17183322
CQ79
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CQ8
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CQ9
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CQ80
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CQ92
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SAMN17183327
E_coli_RXD10
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SAMN17183328
E_coli_RXD5
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FJ26
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FJ38
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SAMN17183332
FY183
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SAMN17183331
FY119
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SAMN17183334
FY197
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SAMN17183333
FY187
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SAMN17183335
FY207
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FY209
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SAMN17183338
FY215
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SAMN17183337
FY213
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SAMN17183341
FY219
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FY217
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FY216
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SAMN17183343
FY228
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SAMN17183342
FY227
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SAMN17183346
FY237
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SAMN17183344
FY229
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SAMN17183345
FY230
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SAMN17183348
FY240
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SAMN17183347
FY239
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SAMN17183350
FY246
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SAMN17183353
FY251
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SAMN17183352
FY249
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SAMN17183349
FY241
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SAMN17183351
FY248
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SAMN17183356
FY256
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SAMN17183355
FY253
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SAMN17183354
FY252
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SAMN17183357
FY257
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SAMN17183358
FY261
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SAMN17183361
FY268
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SAMN17183359
FY262
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SAMN17183363
FY45
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SAMN17183362
FY44
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SAMN17183360
FY267
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SAMN17183364
FY48
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SAMN17183365
FY66
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SAMN17183366
FY74
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SAMN17183369
GS105
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SAMN17183368
GS100
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SAMN17183367
GD40
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SAMN17183370
GS123
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SAMN17183371
GS128
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SAMN17183374
GS16
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SAMN17183373
GS138
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SAMN17183372
GS133
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SAMN17183376
GS207
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SAMN17183375
GS191
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SAMN17183377
GS208
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SAMN17183382
GS35
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SAMN17183378
GS29
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SAMN17183380
GS33
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SAMN17183379
GS3
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SAMN17183381
GS34
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SAMN17183384
GS47
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SAMN17183383
GS4
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SAMN17183386
GS59
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SAMN17183385
GS58
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SAMN17183387
GS6
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SAMN17183388
GS61
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SAMN17183389
GS62
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SAMN17183390
GS72
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SAMN17183392
GS8
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SAMN17183391
GS78
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SAMN17183393
GS82
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SAMN17183396
GS86
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SAMN17183394
GS84
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SAMN17183395
GS85
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SAMN17183398
GS99
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SAMN17183397
GS93
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SAMN17183399
GX18
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SAMN17183400
GX29
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SAMN17183401
GX37
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SAMN17183402
GX38
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SAMN17183403
GZ10
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SAMN17183404
GZ12
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SAMN17183405
GZ16
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SAMN17183406
GZ18
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SAMN17183407
GZ29
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SAMN17183409
GZ34
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SAMN17183408
GZ31
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SAMN17183410
GZ40
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SAMN17183414
GZ64
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SAMN17183415
GZ86
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SAMN17183413
GZ55
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SAMN17183412
GZ51
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SAMN17183411
GZ43
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SAMN17183417
GZ9
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SAMN17183420
HB13
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SAMN17183418
GZ98
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SAMN17183419
HB11
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SAMN17183806
XD101
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SAMN17183804
XD1
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SAMN17183809
XD116
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SAMN17183812
XD2
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SAMN17183811
XD171
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SAMN17183814
XD23
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SAMN17183816
XD25
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SAMN17183818
XD3
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SAMN17183817
XD26
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SAMN17183820
XD34
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SAMN17183823
XD37
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SAMN17183826
XD40
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SAMN17183825
XD39
GCA_019375055.2Complete genomeSAMN17183821
XD35
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SAMN17183416
GZ89
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SAMN17183805
XD100
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SAMN17183807
XD11
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SAMN17183808
XD115
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SAMN17183810
XD12
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SAMN17183813
XD20
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SAMN17183815
XD24
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SAMN17183819
XD33
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SAMN17183822
XD36
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SAMN17183827
XD7
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SAMN17183829
XD97
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SAMN17183528
JX20
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SAMN17183855
YN5
GCA_019376775.1ContigJAEOXJ000000000
SAMN17183527
JX19

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