Escherichia coli (ID 719923) - BioProject

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Accession: PRJNA719923 ID: 719923

Escherichia coli

Sequencing of STEC isolates collected between 2017 to 2020

See Genome Information for Escherichia coli

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STEC isolated from clinical specimens, collected between 2017 and 2020, were sequenced and interrogated for diversity and virulence.

Accession	PRJNA719923
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Sim EM et al., "Added Value of Genomic Surveillance of Virulence Factors in Shiga Toxin-Producing Escherichia coli in New South Wales, Australia.", Front Microbiol, 2021;12:713724
Submission	Registration date: 17-Feb-2022 Centre for Infectious Diseases and Microbiology Laboratory Services, NSW Health Pathology

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	62
SRA Experiments	62
Publications
PubMed	1
PMC	1
Other datasets
BioSample	62
Assembly	62

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

62
62

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_022327825.1	JAHCFO000000000	SAMN19129819	CIDM-0928	Escherichia coli
GCA_022327785.1	JAHCFP000000000	SAMN19129818	CIDM-0872	Escherichia coli
GCA_022327765.1	JAHCFN000000000	SAMN19129820	CIDM-1003	Escherichia coli
GCA_022327735.1	JAHCFL000000000	SAMN19129822	CIDM-1291	Escherichia coli
GCA_022327725.1	JAHCFM000000000	SAMN19129821	CIDM-1013	Escherichia coli
GCA_022327675.1	JAHCFJ000000000	SAMN19129824	CIDM-1936	Escherichia coli
GCA_022327645.1	JAHCFI000000000	SAMN19129825	CIDM-1937	Escherichia coli
GCA_022327565.1	JAHCFH000000000	SAMN19129826	CIDM-1994	Escherichia coli
GCA_022327545.1	JAHCFG000000000	SAMN19129827	CIDM-1995	Escherichia coli
GCA_022327525.1	JAHCFF000000000	SAMN19129828	CIDM-2083	Escherichia coli
GCA_022327485.1	JAHCFD000000000	SAMN19129830	CIDM-3115	Escherichia coli
GCA_022327505.1	JAHCFE000000000	SAMN19129829	CIDM-2890	Escherichia coli
GCA_022327465.1	JAHCFC000000000	SAMN19129831	CIDM-3116	Escherichia coli
GCA_022327385.1	JAHCFB000000000	SAMN19129832	CIDM-4101	Escherichia coli
GCA_022327325.1	JAHCFA000000000	SAMN19129833	CIDM-4102	Escherichia coli
GCA_022327305.1	JAHCEZ000000000	SAMN19129834	CIDM-4104	Escherichia coli
GCA_022327285.1	JAHCEX000000000	SAMN19129836	CIDM-4106	Escherichia coli
GCA_022327255.1	JAHCEJ000000000	SAMN19129850	CIDM-7100	Escherichia coli
GCA_022327245.1	JAHCEY000000000	SAMN19129835	CIDM-4105	Escherichia coli
GCA_022327225.1	JAHCEW000000000	SAMN19129837	CIDM-4383	Escherichia coli
GCA_022327205.1	JAHCEI000000000	SAMN19129851	CIDM-7108	Escherichia coli
GCA_022327185.1	JAHCED000000000	SAMN19129856	CIDM-7542	Escherichia coli
GCA_022327165.1	JAHCEE000000000	SAMN19129855	CIDM-7541	Escherichia coli
GCA_022327145.1	JAHCEH000000000	SAMN19129852	CIDM-7116	Escherichia coli
GCA_022327025.1	JAHCEC000000000	SAMN19129857	CIDM-7543	Escherichia coli
GCA_022327005.1	JAHCEA000000000	SAMN19129859	CIDM-7994	Escherichia coli
GCA_022326985.1	JAHCEB000000000	SAMN19129858	CIDM-7991	Escherichia coli
GCA_022326955.1	JAHCDX000000000	SAMN19129862	CIDM-9555	Escherichia coli
GCA_022326945.1	JAHCDV000000000	SAMN19129864	CIDM-9557	Escherichia coli
GCA_022326925.1	JAHCDZ000000000	SAMN19129860	CIDM-9553	Escherichia coli
GCA_022326855.1	JAHCDY000000000	SAMN19129861	CIDM-9554	Escherichia coli
GCA_022326825.1	JAHCDS000000000	SAMN19129867	CIDM-9843	Escherichia coli
GCA_022326735.1	JAHCDU000000000	SAMN19129865	CIDM-9730	Escherichia coli
GCA_022326725.1	JAHCDT000000000	SAMN19129866	CIDM-9842	Escherichia coli
GCA_022325625.1	JAHCGA000000000	SAMN19129807	CIDM-0154	Escherichia coli
GCA_022325585.1	JAHCGB000000000	SAMN19129806	CIDM-0153	Escherichia coli
GCA_022325545.1	JAHCFZ000000000	SAMN19129808	CIDM-0255	Escherichia coli
GCA_022325535.1	JAHCFY000000000	SAMN19129809	CIDM-0266	Escherichia coli
GCA_022325525.1	JAHCFX000000000	SAMN19129810	CIDM-0310	Escherichia coli
GCA_022325485.1	JAHCFV000000000	SAMN19129812	CIDM-0384	Escherichia coli
GCA_022325475.1	JAHCFW000000000	SAMN19129811	CIDM-0383	Escherichia coli
GCA_022325465.1	JAHCFU000000000	SAMN19129813	CIDM-0385	Escherichia coli
GCA_022325365.1	JAHCFT000000000	SAMN19129814	CIDM-0409	Escherichia coli
GCA_022325325.1	JAHCFS000000000	SAMN19129815	CIDM-0476	Escherichia coli
GCA_022325305.1	JAHCFR000000000	SAMN19129816	CIDM-0731	Escherichia coli
GCA_022325285.1	JAHCFQ000000000	SAMN19129817	CIDM-0801	Escherichia coli
GCA_022322345.1	JAHCFK000000000	SAMN19129823	CIDM-1935	Escherichia coli
GCA_022322265.1	JAHCEU000000000	SAMN19129839	CIDM-5427	Escherichia coli
GCA_022322165.1	JAHCES000000000	SAMN19129841	CIDM-6466	Escherichia coli
GCA_022322185.1	JAHCER000000000	SAMN19129842	CIDM-6468	Escherichia coli
GCA_022322205.1	JAHCET000000000	SAMN19129840	CIDM-5727	Escherichia coli
GCA_022322225.1	JAHCEV000000000	SAMN19129838	CIDM-5426	Escherichia coli
GCA_022322145.1	JAHCEQ000000000	SAMN19129843	CIDM-6469	Escherichia coli
GCA_022322025.1	JAHCEO000000000	SAMN19129845	CIDM-6471	Escherichia coli
GCA_022322065.1	JAHCEP000000000	SAMN19129844	CIDM-6470	Escherichia coli
GCA_022321985.1	JAHCEN000000000	SAMN19129846	CIDM-6472	Escherichia coli
GCA_022321945.1	JAHCEG000000000	SAMN19129853	CIDM-7539	Escherichia coli
GCA_022321965.1	JAHCEM000000000	SAMN19129847	CIDM-6473	Escherichia coli
GCA_022321925.1	JAHCEL000000000	SAMN19129848	CIDM-7068	Escherichia coli
GCA_022321905.1	JAHCEK000000000	SAMN19129849	CIDM-7092	Escherichia coli
GCA_022321885.1	JAHCEF000000000	SAMN19129854	CIDM-7540	Escherichia coli
GCA_022321805.1	JAHCDW000000000	SAMN19129863	CIDM-9556	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	33
Data volume, Mbytes	13610

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Escherichia coli

Sequencing of STEC isolates collected between 2017 to 2020

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