Escherichia coli (ID 741404) - BioProject

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Accession: PRJNA741404 ID: 741404

Escherichia coli

Escherichia coli Genome sequencing and assembly

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9370 additional projects are related by organism.

We sequenced the whole genome of 28 wild boar STEC O139:H1 isolates from ED outbreaks and performed genetic and genomic comparison with STEC O139:H1 and non-O139:H1 strains isolated from domestic pigs.

Accession	PRJNA741404
Data Type	Genome sequencing and assembly, Raw sequence reads, Assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Grants	"Emergence of a Pig DisEase inWILD boars in a context of Increasing Interspecific Interactions" (Grant ID EPIDEWILD-3i, National Research Institute for Agriculture, Food and Environment)
Submission	Registration date: 1-Aug-2021 INSERM IRSD U1220
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	15
SRA Experiments	55
Protein Sequences	14713
Other datasets
BioSample	56
Assembly	3

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

3
3

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_019431335.1	3	SAMN20003598	W13-16	Escherichia coli O139:H1
GCA_019431315.1	2	SAMN20003582	P15-25	Escherichia coli O139:H1
GCA_019431295.1	10	SAMN20003587	P13-6	Escherichia coli O141:H4

SRA Data Details

Parameter	Value
Data volume, Gbases	30
Data volume, Mbytes	12269

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Escherichia coli

Escherichia coli Genome sequencing and assembly

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