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Accession: PRJEB43898 ID: 745133

GENOMAP

Whole genome sequence of a panel of 142 Mycobacterium avium subsp. paratuberculosis field isolated from french longitudinal study of infected dairy cattle.

Mycobacterium avium subspecies paratuberculosis (Map) is the etiological agent of Johne’s disease in ruminants. More...
AccessionPRJEB43898
Data TypeGenome sequencing and assembly
ScopeMonoisolate
PublicationsConde C et al., "Draft Genome Sequences of 142 Mycobacterium avium subsp. paratuberculosis Strains Isolated from Naturally Infected Dairy Cattle.", Microbiol Resour Announc, 2021 Sep 23;10(38):e0069721
SubmissionRegistration date: 9-Jul-2021
inrae tours
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)24754
WGS master138
Genomic DNA4
SRA Experiments192
Protein Sequences640322
Publications
PubMed1
PMC1
Other datasets
BioSample188
Assembly142
Assembly details:
Assembly levelNumber of Assemblies
Complete genome Complete genome
Contig Contig
Total
4
138
142
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_905398855.1ContigCAJPZJ000000000
SAMEA8407200
PICSAR102
Mycobacterium avium subsp. paratuberculosis
GCA_910593945.1ContigCAJVAU000000000
SAMEA8407275
PICSAR216
Mycobacterium avium subsp. paratuberculosis
GCA_910593905.1ContigCAJVAV000000000
SAMEA8407276
PICSAR218
Mycobacterium avium subsp. paratuberculosis
GCA_910593775.1ContigCAJVAR000000000
SAMEA8407224
PICSAR136
Mycobacterium avium subsp. paratuberculosis
GCA_910593605.1ContigCAJVAT000000000
SAMEA8407274
PICSAR215
Mycobacterium avium subsp. paratuberculosis
GCA_910593585.1ContigCAJVAW000000000
SAMEA8407263
PICSAR201
Mycobacterium avium subsp. paratuberculosis
GCA_909129975.1ContigCAJSRS000000000
SAMEA8692683
PICSAR236
Mycobacterium avium subsp. paratuberculosis
GCA_909129965.1ContigCAJSRX000000000
SAMEA8692681
PICSAR171
Mycobacterium avium subsp. paratuberculosis
GCA_909130005.1ContigCAJSRT000000000
SAMEA8692685
PICSAR190
Mycobacterium avium subsp. paratuberculosis
GCA_909129955.1ContigCAJSRV000000000
SAMEA8692684
PICSAR35
Mycobacterium avium subsp. paratuberculosis
GCA_909129935.1ContigCAJSRU000000000
SAMEA8407231
PICSAR144
Mycobacterium avium subsp. paratuberculosis
GCA_909129925.1ContigCAJSRW000000000
SAMEA8692682
PICSAR200
Mycobacterium avium subsp. paratuberculosis
GCA_909129915.1ContigCAJSRR000000000
SAMEA8692679
PICSAR213
Mycobacterium avium subsp. paratuberculosis
GCA_909129905.1ContigCAJSRQ000000000
SAMEA8692680
PICSAR87
Mycobacterium avium subsp. paratuberculosis
GCA_909129895.1ContigCAJSRP000000000
SAMEA8692678
PICSAR97
Mycobacterium avium subsp. paratuberculosis
GCA_909129885.1ContigCAJSRO000000000
SAMEA8692677
PICSAR138
Mycobacterium avium subsp. paratuberculosis
GCA_909129875.1ContigCAJSRN000000000
SAMEA8692676
PICSAR39
Mycobacterium avium subsp. paratuberculosis
GCA_909129865.1ContigCAJSRM000000000
SAMEA8692675
PICSAR42
Mycobacterium avium subsp. paratuberculosis
GCA_909129845.1ContigCAJSRL000000000
SAMEA8407344
PICSAR98
Mycobacterium avium subsp. paratuberculosis
GCA_909129855.1ContigCAJSRK000000000
SAMEA8407343
PICSAR94
Mycobacterium avium subsp. paratuberculosis
GCA_909129835.1ContigCAJSRJ000000000
SAMEA8692674
PICSAR85
Mycobacterium avium subsp. paratuberculosis
GCA_909129825.1ContigCAJSRI000000000
SAMEA8407342
PICSAR9
Mycobacterium avium subsp. paratuberculosis
GCA_909129815.1ContigCAJSRG000000000
SAMEA8407339
PICSAR78
Mycobacterium avium subsp. paratuberculosis
GCA_909129785.1ContigCAJSRH000000000
SAMEA8407341
PICSAR81
Mycobacterium avium subsp. paratuberculosis
GCA_909129795.1ContigCAJSRE000000000
SAMEA8407340
PICSAR8
Mycobacterium avium subsp. paratuberculosis
GCA_909129765.1ContigCAJSRD000000000
SAMEA8407336
PICSAR75
Mycobacterium avium subsp. paratuberculosis
GCA_909129745.1ContigCAJSRA000000000
SAMEA8407331
PICSAR70
Mycobacterium avium subsp. paratuberculosis
GCA_909129775.1ContigCAJSQY000000000
SAMEA8407334
PICSAR73
Mycobacterium avium subsp. paratuberculosis
GCA_909129755.1ContigCAJSRB000000000
SAMEA8407335
PICSAR74
Mycobacterium avium subsp. paratuberculosis
GCA_909129725.1ContigCAJSQW000000000
SAMEA8407337
PICSAR76
Mycobacterium avium subsp. paratuberculosis
GCA_909129695.1ContigCAJSQV000000000
SAMEA8407330
PICSAR7
Mycobacterium avium subsp. paratuberculosis
GCA_909129735.1ContigCAJSQX000000000
SAMEA8407332
PICSAR71
Mycobacterium avium subsp. paratuberculosis
GCA_909129715.1ContigCAJSRC000000000
SAMEA8407333
PICSAR72
Mycobacterium avium subsp. paratuberculosis
GCA_909129685.1ContigCAJSQU000000000
SAMEA8407327
PICSAR65
Mycobacterium avium subsp. paratuberculosis
GCA_909129675.1ContigCAJSQT000000000
SAMEA8407326
PICSAR64
Mycobacterium avium subsp. paratuberculosis
GCA_909129665.1ContigCAJSQS000000000
SAMEA8407325
PICSAR63
Mycobacterium avium subsp. paratuberculosis
GCA_909129655.1ContigCAJSQQ000000000
SAMEA8407322
PICSAR6
Mycobacterium avium subsp. paratuberculosis
GCA_909129645.1ContigCAJSQR000000000
SAMEA8407324
PICSAR61
Mycobacterium avium subsp. paratuberculosis
GCA_909129635.1ContigCAJSQP000000000
SAMEA8407319
PICSAR56
Mycobacterium avium subsp. paratuberculosis
GCA_909129625.1ContigCAJSQO000000000
SAMEA8407320
PICSAR58
Mycobacterium avium subsp. paratuberculosis
GCA_909129605.1ContigCAJSQM000000000
SAMEA8407316
PICSAR52
Mycobacterium avium subsp. paratuberculosis
GCA_909129585.1ContigCAJSQK000000000
SAMEA8407318
PICSAR55
Mycobacterium avium subsp. paratuberculosis
GCA_909129615.1ContigCAJSQN000000000
SAMEA8407317
PICSAR53
Mycobacterium avium subsp. paratuberculosis
GCA_909129575.1ContigCAJSQJ000000000
SAMEA8407314
PICSAR5
Mycobacterium avium subsp. paratuberculosis
GCA_909129525.1ContigCAJSQE000000000
SAMEA8407308
PICSAR4
Mycobacterium avium subsp. paratuberculosis
GCA_909129555.1ContigCAJSQD000000000
SAMEA8407311
PICSAR47
Mycobacterium avium subsp. paratuberculosis
GCA_909129535.1ContigCAJSQI000000000
SAMEA8407310
PICSAR46
Mycobacterium avium subsp. paratuberculosis
GCA_909129515.1ContigCAJSQH000000000
SAMEA8407306
PICSAR36
Mycobacterium avium subsp. paratuberculosis
GCA_909129545.1ContigCAJSQB000000000
SAMEA8407307
PICSAR38
Mycobacterium avium subsp. paratuberculosis
GCA_909129565.1ContigCAJSQC000000000
SAMEA8407309
PICSAR43
Mycobacterium avium subsp. paratuberculosis
GCA_909129505.1ContigCAJSQF000000000
SAMEA8407313
PICSAR49
Mycobacterium avium subsp. paratuberculosis
GCA_909129495.1ContigCAJSQG000000000
SAMEA8407312
PICSAR48
Mycobacterium avium subsp. paratuberculosis
GCA_909129475.1ContigCAJSQA000000000
SAMEA8407305
PICSAR30
Mycobacterium avium subsp. paratuberculosis
GCA_909129485.1ContigCAJSPZ000000000
SAMEA8407304
PICSAR3
Mycobacterium avium subsp. paratuberculosis
GCA_909129465.1ContigCAJSPY000000000
SAMEA8407300
PICSAR26
Mycobacterium avium subsp. paratuberculosis
GCA_909129455.1ContigCAJSPX000000000
SAMEA8407302
PICSAR28
Mycobacterium avium subsp. paratuberculosis
GCA_909129445.1ContigCAJSPW000000000
SAMEA8407297
PICSAR255
Mycobacterium avium subsp. paratuberculosis
GCA_909129435.1ContigCAJSPU000000000
SAMEA8407303
PICSAR29
Mycobacterium avium subsp. paratuberculosis
GCA_909129425.1ContigCAJSPV000000000
SAMEA8407296
PICSAR254
Mycobacterium avium subsp. paratuberculosis
GCA_909129415.1ContigCAJSPT000000000
SAMEA8692673
PICSAR253
Mycobacterium avium subsp. paratuberculosis
GCA_909129405.1ContigCAJSPS000000000
SAMEA8407295
PICSAR252
Mycobacterium avium subsp. paratuberculosis
GCA_909129395.1ContigCAJSPM000000000
SAMEA8692672
PICSAR25
Mycobacterium avium subsp. paratuberculosis
GCA_909129385.1ContigCAJSPP000000000
SAMEA8407285
PICSAR238
Mycobacterium avium subsp. paratuberculosis
GCA_909129375.1ContigCAJSPL000000000
SAMEA8407292
PICSAR249
Mycobacterium avium subsp. paratuberculosis
GCA_909129365.1ContigCAJSPO000000000
SAMEA8407283
PICSAR232
Mycobacterium avium subsp. paratuberculosis
GCA_909129335.1ContigCAJSPH000000000
SAMEA8407282
PICSAR23
Mycobacterium avium subsp. paratuberculosis
GCA_909129325.1ContigCAJSPR000000000
SAMEA8407289
PICSAR246
Mycobacterium avium subsp. paratuberculosis
GCA_909129355.1ContigCAJSPN000000000
SAMEA8407287
PICSAR240
Mycobacterium avium subsp. paratuberculosis
GCA_909129345.1ContigCAJSPJ000000000
SAMEA8407291
PICSAR248
Mycobacterium avium subsp. paratuberculosis
GCA_909129305.1ContigCAJSPQ000000000
SAMEA8407284
PICSAR235
Mycobacterium avium subsp. paratuberculosis
GCA_909129295.1ContigCAJSPK000000000
SAMEA8407286
PICSAR24
Mycobacterium avium subsp. paratuberculosis
GCA_909129315.1ContigCAJSPI000000000
SAMEA8407293
PICSAR250
Mycobacterium avium subsp. paratuberculosis
GCA_909129275.1ContigCAJSPD000000000
SAMEA8407268
PICSAR208
Mycobacterium avium subsp. paratuberculosis
GCA_909129225.1ContigCAJSPG000000000
SAMEA8407269
PICSAR209
Mycobacterium avium subsp. paratuberculosis
GCA_909129255.1ContigCAJSPB000000000
SAMEA8407271
PICSAR211
Mycobacterium avium subsp. paratuberculosis
GCA_909129215.1ContigCAJSPA000000000
SAMEA8692671
PICSAR21
Mycobacterium avium subsp. paratuberculosis
GCA_909129245.1ContigCAJSPE000000000
SAMEA8407280
PICSAR222
Mycobacterium avium subsp. paratuberculosis
GCA_909129265.1ContigCAJSPC000000000
SAMEA8407273
PICSAR214
Mycobacterium avium subsp. paratuberculosis
GCA_909129235.1ContigCAJSPF000000000
SAMEA8407279
PICSAR22
Mycobacterium avium subsp. paratuberculosis
GCA_909129195.1ContigCAJSOQ000000000
SAMEA8407255
PICSAR19
Mycobacterium avium subsp. paratuberculosis
GCA_909129185.1ContigCAJSOW000000000
SAMEA8407261
PICSAR2
Mycobacterium avium subsp. paratuberculosis
GCA_909129175.1ContigCAJSOU000000000
SAMEA8407257
PICSAR192
Mycobacterium avium subsp. paratuberculosis
GCA_909129135.1ContigCAJSOP000000000
SAMEA8692670
PICSAR205
Mycobacterium avium subsp. paratuberculosis
GCA_909129165.1ContigCAJSON000000000
SAMEA8407260
PICSAR198
Mycobacterium avium subsp. paratuberculosis
GCA_909129145.1ContigCAJSOT000000000
SAMEA8407267
PICSAR206
Mycobacterium avium subsp. paratuberculosis
GCA_909129155.1ContigCAJSOX000000000
SAMEA8407264
PICSAR202
Mycobacterium avium subsp. paratuberculosis
GCA_909129125.1ContigCAJSOO000000000
SAMEA8407259
PICSAR197
Mycobacterium avium subsp. paratuberculosis
GCA_909129095.1ContigCAJSOS000000000
SAMEA8407258
PICSAR196
Mycobacterium avium subsp. paratuberculosis
GCA_909129105.1ContigCAJSOV000000000
SAMEA8407266
PICSAR204
Mycobacterium avium subsp. paratuberculosis
GCA_909129115.1ContigCAJSOR000000000
SAMEA8407256
PICSAR191
Mycobacterium avium subsp. paratuberculosis
GCA_909129065.1ContigCAJSOH000000000
SAMEA8407247
PICSAR178
Mycobacterium avium subsp. paratuberculosis
GCA_909129045.1ContigCAJSOG000000000
SAMEA8407250
PICSAR180
Mycobacterium avium subsp. paratuberculosis
GCA_909129085.1ContigCAJSOK000000000
SAMEA8407248
PICSAR179
Mycobacterium avium subsp. paratuberculosis
GCA_909129035.1ContigCAJSOJ000000000
SAMEA8407253
PICSAR184
Mycobacterium avium subsp. paratuberculosis
GCA_909129075.1ContigCAJSOE000000000
SAMEA8407246
PICSAR172
Mycobacterium avium subsp. paratuberculosis
GCA_909129055.1ContigCAJSOM000000000
SAMEA8407249
PICSAR18
Mycobacterium avium subsp. paratuberculosis
GCA_909129015.1ContigCAJSOF000000000
SAMEA8407252
PICSAR182
Mycobacterium avium subsp. paratuberculosis
GCA_909129005.1ContigCAJSOL000000000
SAMEA8407254
PICSAR189
Mycobacterium avium subsp. paratuberculosis
GCA_909129025.1ContigCAJSOI000000000
SAMEA8407251
PICSAR181
Mycobacterium avium subsp. paratuberculosis
GCA_909128975.1ContigCAJSOC000000000
SAMEA8407243
PICSAR164
Mycobacterium avium subsp. paratuberculosis
GCA_909128995.1ContigCAJSOB000000000
SAMEA8692669
PICSAR168B
Mycobacterium avium subsp. paratuberculosis
GCA_909128965.1ContigCAJSOD000000000
SAMEA8407242
PICSAR160
Mycobacterium avium subsp. paratuberculosis
GCA_909128985.1ContigCAJSNZ000000000
SAMEA8407244
PICSAR168
Mycobacterium avium subsp. paratuberculosis
GCA_909128955.1ContigCAJSOA000000000
SAMEA8692668
PICSAR162
Mycobacterium avium subsp. paratuberculosis
GCA_909128925.1ContigCAJSNY000000000
SAMEA8407237
PICSAR15
Mycobacterium avium subsp. paratuberculosis
GCA_909128935.1ContigCAJSNX000000000
SAMEA8407228
PICSAR141
Mycobacterium avium subsp. paratuberculosis
GCA_909128945.1ContigCAJSNW000000000
SAMEA8407227
PICSAR140
Mycobacterium avium subsp. paratuberculosis
GCA_909128885.1ContigCAJSNN000000000
SAMEA8407240
PICSAR157
Mycobacterium avium subsp. paratuberculosis
GCA_909128895.1ContigCAJSNK000000000
SAMEA8407241
PICSAR16
Mycobacterium avium subsp. paratuberculosis
GCA_909128905.1ContigCAJSNO000000000
SAMEA8407234
PICSAR147
Mycobacterium avium subsp. paratuberculosis
GCA_909128875.1ContigCAJSNR000000000
SAMEA8407223
PICSAR135
Mycobacterium avium subsp. paratuberculosis
GCA_909128915.1ContigCAJSNV000000000
SAMEA8407232
PICSAR145
Mycobacterium avium subsp. paratuberculosis
GCA_909128805.1ContigCAJSNM000000000
SAMEA8407235
PICSAR148
Mycobacterium avium subsp. paratuberculosis
GCA_909128865.1ContigCAJSNL000000000
SAMEA8407239
PICSAR154
Mycobacterium avium subsp. paratuberculosis
GCA_909128835.1ContigCAJSNU000000000
SAMEA8692667
PICSAR131
Mycobacterium avium subsp. paratuberculosis
GCA_909128845.1ContigCAJSNP000000000
SAMEA8407226
PICSAR14
Mycobacterium avium subsp. paratuberculosis
GCA_909128815.1ContigCAJSNQ000000000
SAMEA8407222
PICSAR132
Mycobacterium avium subsp. paratuberculosis
GCA_909128825.1ContigCAJSNT000000000
SAMEA8407230
PICSAR143
Mycobacterium avium subsp. paratuberculosis
GCA_909128795.1ContigCAJSNJ000000000
SAMEA8407220
PICSAR13
Mycobacterium avium subsp. paratuberculosis
GCA_909128785.1ContigCAJSNI000000000
SAMEA8407215
PICSAR124
Mycobacterium avium subsp. paratuberculosis
GCA_909128775.1ContigCAJSNH000000000
SAMEA8407217
PICSAR126
Mycobacterium avium subsp. paratuberculosis
GCA_909128765.1ContigCAJSMY000000000
SAMEA8407205
PICSAR11
Mycobacterium avium subsp. paratuberculosis
GCA_909128675.1ContigCAJSND000000000
SAMEA8407202
PICSAR104
Mycobacterium avium subsp. paratuberculosis
GCA_909128745.1ContigCAJSMZ000000000
SAMEA8692664
PICSAR100
Mycobacterium avium subsp. paratuberculosis
GCA_909128735.1ContigCAJSMU000000000
SAMEA8407201
PICSAR103
Mycobacterium avium subsp. paratuberculosis
GCA_909128695.1ContigCAJSMV000000000
SAMEA8407204
PICSAR107
Mycobacterium avium subsp. paratuberculosis
GCA_909128665.1ContigCAJSNE000000000
SAMEA8407207
PICSAR111
Mycobacterium avium subsp. paratuberculosis
GCA_909128715.1ContigCAJSMX000000000
SAMEA8692665
PICSAR120
Mycobacterium avium subsp. paratuberculosis
GCA_909128725.1ContigCAJSNA000000000
SAMEA8692666
PICSAR124B
Mycobacterium avium subsp. paratuberculosis
GCA_909128755.1ContigCAJSNF000000000
SAMEA8407198
PICSAR1
Mycobacterium avium subsp. paratuberculosis
GCA_909128645.1ContigCAJSNC000000000
SAMEA8407203
PICSAR106
Mycobacterium avium subsp. paratuberculosis
GCA_909128705.1ContigCAJSMR000000000
SAMEA8407199
PICSAR10
Mycobacterium avium subsp. paratuberculosis
GCA_909128685.1ContigCAJSMS000000000
SAMEA8407206
PICSAR110
Mycobacterium avium subsp. paratuberculosis
GCA_909128655.1ContigCAJSMW000000000
SAMEA8407213
PICSAR119
Mycobacterium avium subsp. paratuberculosis
GCA_909128635.1ContigCAJSNG000000000
SAMEA8407209
PICSAR113
Mycobacterium avium subsp. paratuberculosis
GCA_909128625.1ContigCAJSMT000000000
SAMEA8407211
PICSAR117
Mycobacterium avium subsp. paratuberculosis
GCA_909128615.1ContigCAJSNB000000000
SAMEA8407212
PICSAR118
Mycobacterium avium subsp. paratuberculosis
GCA_911528495.1ContigCAJVRD000000000
SAMEA8407270
PICSAR210
Mycobacterium avium subsp. paratuberculosis
GCA_909129705.2Complete genome
1
SAMEA8407329
PICSAR68
Mycobacterium avium subsp. paratuberculosis
GCA_909129595.2Complete genome
1
SAMEA8407315
PICSAR51
Mycobacterium avium subsp. paratuberculosis
GCA_909128855.2Complete genome
1
SAMEA8407229
PICSAR142
Mycobacterium avium subsp. paratuberculosis
GCA_909129805.2Complete genome
1
SAMEA8407338
PICSAR77
Mycobacterium avium subsp. paratuberculosis
SRA Data Details
ParameterValue
Data volume, Gbases72
Data volume, Mbytes35055

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    GENOMAP
    Whole genome sequence of a panel of 142 Mycobacterium avium subsp. paratuberculosis field isolated from french longitudinal study of infected dairy cattle.
    BioProject

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