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Accession: PRJNA761561 ID: 761561

Escherichia coli

Colibactin E. coli in Red meat

See Genome Information for Escherichia coli
Red meat consumption has been linked with colorectal cancer (CRC), which in turn is characterized by higher abundance of colibactin (clb) E. More...
AccessionPRJNA761561
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismEscherichia coli[Taxonomy ID: 562]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
PublicationsGuragain M et al., "Characterization of Escherichia coli harboring colibactin genes (clb) isolated from beef production and processing systems.", Sci Rep, 2022 Mar 29;12(1):5305
Grants
  • "Ensuring Escherichia coli Possessing Colibactin Genes (clb) Linked to Colorectal Cancer Do Not Become a Food Safety Problem for Beef" (Grant ID ARS #58-3040-0-015, Nebraska Beef Council)
SubmissionRegistration date: 4-Apr-2022
US Meat Animal Research Center
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)54
SRA Experiments54
Publications
PubMed1
PMC1
Other datasets
BioSample54
Assembly54
Assembly details:
Assembly levelNumber of Assemblies
54
54
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_022812315.1ContigJAIPXJ000000000SAMN21352835
Gb687
GCA_022812305.1ContigJAIPXI000000000SAMN21352834
Gb685
GCA_022812245.1ContigJAIPXK000000000SAMN21352836
Col1011
GCA_022812265.1ContigJAIPXL000000000SAMN21352837
Col1134
GCA_022812185.1ContigJAIPXM000000000SAMN21352838
Col1143
GCA_022813005.1ContigJAIPVX000000000SAMN21352797
CE77
GCA_022812965.1ContigJAIPVZ000000000SAMN21352799
Col1039
GCA_022812955.1ContigJAIPWA000000000SAMN21352800
Col1050
GCA_022812945.1ContigJAIPVY000000000SAMN21352798
CE169
GCA_022812925.1ContigJAIPWC000000000SAMN21352802
Col1123
GCA_022812905.1ContigJAIPWD000000000SAMN21352803
Col1128
GCA_022812885.1ContigJAIPWE000000000SAMN21352804
Col1141
GCA_022812865.1ContigJAIPWG000000000SAMN21352806
Col1226
GCA_022812845.1ContigJAIPWI000000000SAMN21352808
Col15
GCA_022812825.1ContigJAIPWJ000000000SAMN21352809
Col202
GCA_022812805.1ContigJAIPWK000000000SAMN21352810
Col206
GCA_022812785.1ContigJAIPWL000000000SAMN21352811
Col310
GCA_022812745.1ContigJAIPWM000000000SAMN21352812
Col404
GCA_022812725.1ContigJAIPWP000000000SAMN21352815
Col514
GCA_022812735.1ContigJAIPWN000000000SAMN21352813
Col422
GCA_022812705.1ContigJAIPWO000000000SAMN21352814
Col454
GCA_022812685.1ContigJAIPWQ000000000SAMN21352816
Col523
GCA_022812665.1ContigJAIPWR000000000SAMN21352817
Col524
GCA_022812645.1ContigJAIPWT000000000SAMN21352819
Col654
GCA_022812615.1ContigJAIPWU000000000SAMN21352820
Col755
GCA_022812605.1ContigJAIPWS000000000SAMN21352818
Col54
GCA_022812585.1ContigJAIPWV000000000SAMN21352821
Col808
GCA_022812565.1ContigJAIPWW000000000SAMN21352822
Col931
GCA_022812545.1ContigJAIPWX000000000SAMN21352823
Col942
GCA_022812525.1ContigJAIPWZ000000000SAMN21352825
Col949
GCA_022812505.1ContigJAIPWY000000000SAMN21352824
Col944
GCA_022812485.1ContigJAIPXA000000000SAMN21352826
Gb181
GCA_022812465.1ContigJAIPXB000000000SAMN21352827
Gb188
GCA_022812445.1ContigJAIPXD000000000SAMN21352829
Gb366
GCA_022812425.1ContigJAIPXC000000000SAMN21352828
Gb214
GCA_022812405.1ContigJAIPXF000000000SAMN21352831
Gb473
GCA_022812385.1ContigJAIPXE000000000SAMN21352830
Gb384
GCA_022812345.1ContigJAIPXH000000000SAMN21352833
Gb593
GCA_022812365.1ContigJAIPXG000000000SAMN21352832
Gb573
GCA_022836695.1ContigJAIPXP000000000SAMN21352841
Col232
GCA_022836655.1ContigJAIPWF000000000SAMN21352805
Col1225
GCA_022836735.1ContigJAIPWB000000000SAMN21352801
Col1121
GCA_022836715.1ContigJAIPWH000000000SAMN21352807
Col1257
GCA_022812005.1ContigJAIPXX000000000SAMN21352849
Col738
GCA_022811985.1ContigJAIPXV000000000SAMN21352847
Col719
GCA_022811995.1ContigJAIPXW000000000SAMN21352848
Col726
GCA_022811965.1ContigJAIPXY000000000SAMN21352850
Gb131
GCA_022812195.1ContigJAIPXO000000000SAMN21352840
Col1252
GCA_022812165.1ContigJAIPXQ000000000SAMN21352842
Col255
GCA_022812145.1ContigJAIPXN000000000SAMN21352839
Col1250
GCA_022812125.1ContigJAIPXS000000000SAMN21352844
Col316
GCA_022812105.1ContigJAIPXR000000000SAMN21352843
Col260
GCA_022812075.1ContigJAIPXU000000000SAMN21352846
Col50
GCA_022812065.1ContigJAIPXT000000000SAMN21352845
Col41
SRA Data Details
ParameterValue
Data volume, Gbases16
Data volume, Mbytes8303

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