In Norway there was an outbreak of acute haemorrhagic diarrhoea syndrome in dogs in 2019. Bacterial cultivation indicated that strains from the species Providencia alcalifaciens were the likely cause of the syndrome. Here we performed shotgun sequencing and hybrid whole genome assembly using MiSeq Illumina and Oxford nanopore sequence data on P. alcalifaciens isolates. The goal of our analysis was to determine if the isolates obtained from different diseased dogs were from a common point source.
These analysis were performed as part of the Norwegian Veterinary Institute in-house project SEQTECH.
| Accession | PRJEB47525 |
| Type | Umbrella project |
| Submission | Registration date: 15-Sep-2021
NORWEGIAN VETERINARY INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (Genomic DNA) | 32 |
| SRA Experiments | 16 |
| Protein Sequences | 31775 |
| Other datasets |
| BioSample | 24 |
| Assembly | 8 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
| Other | 3 |
BioProject
accession | Name | Title |
|---|
| PRJEB46351 | Providencia alcalifaciens MiSeq Illumina sequence data from a 2019 Norwegian outbreak of acute hemorrhagic diarrhea syndrome in dogs. | Providencia alcalifaciens Illumina sequence data (NORWEGIAN VETERINARY INSTITUTE) | | PRJEB47469 | Providencia alcalifaciens Nanopore sequence data from a 2019 Norwegian outbreak of acute hemorrhagic diarrhea syndrome in dogs. | Providencia alcalifaciens Nanopore sequence data (NORWEGIAN VETERINARY INSTITUTE) | | PRJEB47262 | Providencia alcalifaciens hybrid assemblies from a 2019 Norwegian outbreak of acute hemorrhagic diarrhea syndrome in dogs. | Hybrid genome assemblies of Providencia alcalifaciens isolates (NORWEGIAN VETERINARY INSTITUTE) |
|