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Accession: PRJNA791304 ID: 791304

Erwinia amylovora from Northern Italy (2005-2020)

Whole genome sequencing of 82 isolates of E. Amylovora collected from different hosts in the Italian region of Trentino between 2005 and 2020.
AccessionPRJNA791304
Data TypeGenome sequencing and assembly
ScopeMultispecies
PublicationsAlbanese D et al., "Genome sequencing provides new insights on the distribution of Erwinia amylovora lineages in northern Italy.", Environ Microbiol Rep, 2022 Aug;14(4):584-590
SubmissionRegistration date: 21-Dec-2021
Fondazione Edmund Mach
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)82
SRA Experiments82
Publications
PubMed1
PMC1
Other datasets
BioSample82
Assembly82
Assembly details:
Assembly levelNumber of Assemblies
82
82
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_023183245.1ScaffoldJAJTKO000000000SAMN24274130
57724_ID1772_62-Ea_20_55_S102_L001
GCA_023183225.1ScaffoldJAJTKM000000000SAMN24274132
57726_ID1772_64-Ea_20_64_S104_L001
GCA_023183215.1ScaffoldJAJTKL000000000SAMN24274133
57727_ID1772_65-Ea_20_65_S105_L001
GCA_023183195.1ScaffoldJAJTKJ000000000SAMN24274135
57729_ID1772_67-Ea_20_69_S107_L001
GCA_023183175.1ScaffoldJAJTKK000000000SAMN24274134
57728_ID1772_66-Ea_20_68_S106_L001
GCA_023183155.1ScaffoldJAJTKH000000000SAMN24274137
57731_ID1772_69-Ea_20_71_S109_L001
GCA_023183135.1ScaffoldJAJTKG000000000SAMN24274138
57732_ID1772_70-Ea_20_74_S110_L001
GCA_023183115.1ScaffoldJAJTKI000000000SAMN24274136
57730_ID1772_68-Ea_20_70_S108_L001
GCA_023183085.1ScaffoldJAJTKE000000000SAMN24274140
57734_ID1772_72-Ea_20_77_S112_L001
GCA_023183075.1ScaffoldJAJTKF000000000SAMN24274139
57733_ID1772_71-Ea_20_76_S111_L001
GCA_023183015.1ScaffoldJAJTKD000000000SAMN24274141
57735_ID1772_73-Ea_20_84_S113_L001
GCA_023183025.1ScaffoldJAJTJY000000000SAMN24274146
57740_ID1772_78-Ea_20_131_S118_L001
GCA_023183035.1ScaffoldJAJTKA000000000SAMN24274144
57738_ID1772_76-Ea_20_119_S116_L001
GCA_023182995.1ScaffoldJAJTKB000000000SAMN24274143
57737_ID1772_75-Ea_20_109_S115_L001
GCA_023182975.1ScaffoldJAJTKC000000000SAMN24274142
57736_ID1772_74-Ea_20_86_S114_L001
GCA_023182945.1ScaffoldJAJTJZ000000000SAMN24274145
57739_ID1772_77-Ea_20_121_S117_L001
GCA_023182935.1ScaffoldJAJTJU000000000SAMN24274150
57744_ID1772_82-CP_07_S122_L001
GCA_023182905.1ScaffoldJAJTJW000000000SAMN24274148
57742_ID1772_80-Ea_20_151_S120_L001
GCA_023182895.1ScaffoldJAJTJV000000000SAMN24274149
57743_ID1772_81-CP_06_S121_L001
GCA_023182875.1ScaffoldJAJTJX000000000SAMN24274147
57741_ID1772_79-Ea_20_136_S119_L001
GCA_023183385.1ScaffoldJAJTKW000000000SAMN24274122
57716_ID1772_54-Ea_20_33_S94_L001
GCA_023183775.1ScaffoldJAJTLN000000000SAMN24274105
57699_ID1772_37-Ea_17_01_S77_L001
GCA_023183475.1ScaffoldJAJTKZ000000000SAMN24274119
57713_ID1772_51-Ea_20_27_S91_L001
GCA_023183455.1ScaffoldJAJTKV000000000SAMN24274123
57717_ID1772_55-Ea_20_34_S95_L001
GCA_023183425.1ScaffoldJAJTKX000000000SAMN24274121
57715_ID1772_53-Ea_20_31_S93_L001
GCA_023183415.1ScaffoldJAJTKU000000000SAMN24274124
57718_ID1772_56-Ea_20_40_S96_L001
GCA_023183375.1ScaffoldJAJTKT000000000SAMN24274125
57719_ID1772_57-Ea_20_45_S97_L001
GCA_023183355.1ScaffoldJAJTKS000000000SAMN24274126
57720_ID1772_58-Ea_20_46_S98_L001
GCA_023183285.1ScaffoldJAJTKP000000000SAMN24274129
57723_ID1772_61-Ea_20_54_S101_L001
GCA_023183295.1ScaffoldJAJTKN000000000SAMN24274131
57725_ID1772_63-Ea_20_61_S103_L001
GCA_023183315.1ScaffoldJAJTKR000000000SAMN24274127
57721_ID1772_59-Ea_20_49_S99_L001
GCA_023183275.1ScaffoldJAJTKQ000000000SAMN24274128
57722_ID1772_60-Ea_20_50_S100_L001
GCA_023183645.1ScaffoldJAJTLI000000000SAMN24274110
57704_ID1772_42-Ea_20_04_S82_L001
GCA_023183635.1ScaffoldJAJTLD000000000SAMN24274115
57709_ID1772_47-Ea_20_17_S87_L001
GCA_023183605.1ScaffoldJAJTLG000000000SAMN24274112
57706_ID1772_44-Ea_20_10_S84_L001
GCA_023183595.1ScaffoldJAJTLE000000000SAMN24274114
57708_ID1772_46-Ea_20_14_S86_L001
GCA_023183575.1ScaffoldJAJTLF000000000SAMN24274113
57707_ID1772_45-Ea_20_13_S85_L001
GCA_023183555.1ScaffoldJAJTLC000000000SAMN24274116
57710_ID1772_48-Ea_20_18_S88_L001
GCA_023183675.1ScaffoldJAJTLL000000000SAMN24274107
57701_ID1772_39-Ea_18_05_S79_L001
GCA_023183685.1ScaffoldJAJTLH000000000SAMN24274111
57705_ID1772_43-Ea_20_06_S83_L001
GCA_023183495.1ScaffoldJAJTLA000000000SAMN24274118
57712_ID1772_50-Ea_20_20_S90_L001
GCA_023183505.1ScaffoldJAJTLB000000000SAMN24274117
57711_ID1772_49-Ea_20_19_S89_L001
GCA_023183535.1ScaffoldJAJTKY000000000SAMN24274120
57714_ID1772_52-Ea_20_30_S92_L001
GCA_023183715.1ScaffoldJAJTLM000000000SAMN24274106
57700_ID1772_38-Ea_17_03_S78_L001
GCA_023183755.1ScaffoldJAJTLK000000000SAMN24274108
57702_ID1772_40-Ea_18_11_S80_L001
GCA_023183725.1ScaffoldJAJTLJ000000000SAMN24274109
57703_ID1772_41-Ea_19_10_S81_L001
GCA_023183825.1ScaffoldJAJTLR000000000SAMN24274101
57695_ID1772_33-Ea_15_03_S73_L001
GCA_023183815.1ScaffoldJAJTLO000000000SAMN24274104
57698_ID1772_36-Ea_15_14_S76_L001
GCA_023183855.1ScaffoldJAJTLS000000000SAMN24274100
57694_ID1772_32-Ea_14_12_S72_L001
GCA_023183795.1ScaffoldJAJTLQ000000000SAMN24274102
57696_ID1772_34-Ea_15_04_S74_L001
GCA_023183805.1ScaffoldJAJTLP000000000SAMN24274103
57697_ID1772_35-Ea_15_08_S75_L001
GCA_023183975.1ScaffoldJAJTLX000000000SAMN24274095
57689_ID1772_27-Ea_12_18_S67_L001
GCA_023183945.1ScaffoldJAJTLU000000000SAMN24274098
57692_ID1772_30-Ea_14_03_S70_L001
GCA_023183915.1ScaffoldJAJTLW000000000SAMN24274096
57690_ID1772_28-Ea_12_19_S68_L001
GCA_023183895.1ScaffoldJAJTLT000000000SAMN24274099
57693_ID1772_31-Ea_14_11_S71_L001
GCA_023183905.1ScaffoldJAJTLV000000000SAMN24274097
57691_ID1772_29-Ea_13_12_S69_L001
GCA_023183995.1ScaffoldJAJTLY000000000SAMN24274094
57688_ID1772_26-Ea_12_16_S66_L001
GCA_023184165.1ScaffoldJAJTMF000000000SAMN24274087
57681_ID1772_19-Ea_12_08_S59_L001
GCA_023184145.1ScaffoldJAJTMD000000000SAMN24274089
57683_ID1772_21-Ea_12_11_S61_L001
GCA_023184135.1ScaffoldJAJTMG000000000SAMN24274086
57680_ID1772_18-Ea_12_06_S58_L001
GCA_023184115.1ScaffoldJAJTMH000000000SAMN24274085
57679_ID1772_17-Ea_11_13_S57_L001
GCA_023184095.1ScaffoldJAJTME000000000SAMN24274088
57682_ID1772_20-Ea_12_10_S60_L001
GCA_023184065.1ScaffoldJAJTMB000000000SAMN24274091
57685_ID1772_23-Ea_12_13_S63_L001
GCA_023184045.1ScaffoldJAJTMC000000000SAMN24274090
57684_ID1772_22-Ea_12_12_S62_L001
GCA_023184035.1ScaffoldJAJTLZ000000000SAMN24274093
57687_ID1772_25-Ea_12_15_S65_L001
GCA_023184005.1ScaffoldJAJTMA000000000SAMN24274092
57686_ID1772_24-Ea_12_14_S64_L001
GCA_023184495.1ScaffoldJAJTMW000000000SAMN24274070
57664_ID1772_2-Ea_05_09_S42_L001
GCA_023184355.1ScaffoldJAJTMQ000000000SAMN24274076
57670_ID1772_8-Ea_07_08_S48_L001
GCA_023184335.1ScaffoldJAJTMP000000000SAMN24274077
57671_ID1772_9-Ea_08_07_S49_L001
GCA_023184285.1ScaffoldJAJTML000000000SAMN24274081
57675_ID1772_13-Ea_08_34_S53_L001
GCA_023184275.1ScaffoldJAJTMN000000000SAMN24274079
57673_ID1772_11-Ea_08_18_S51_L001
GCA_023184295.1ScaffoldJAJTMO000000000SAMN24274078
57672_ID1772_10-Ea_08_15_S50_L001
GCA_023184255.1ScaffoldJAJTMM000000000SAMN24274080
57674_ID1772_12-Ea_08_33_S52_L001
GCA_023184225.1ScaffoldJAJTMJ000000000SAMN24274083
57677_ID1772_15-Ea_10_04_S55_L001
GCA_023184215.1ScaffoldJAJTMK000000000SAMN24274082
57676_ID1772_14-Ea_08_36_S54_L001
GCA_023184195.1ScaffoldJAJTMI000000000SAMN24274084
57678_ID1772_16-Ea_11_12_S56_L001
GCA_023184475.1ScaffoldJAJTMV000000000SAMN24274071
57665_ID1772_3-Ea_05_20_S43_L001
GCA_023184455.1ScaffoldJAJTMS000000000SAMN24274074
57668_ID1772_6-Ea_05_27_S46_L001
GCA_023184435.1ScaffoldJAJTJR000000000SAMN24274069
57663_ID1772_1-Ea_05_07_S41_L001
GCA_023184415.1ScaffoldJAJTMT000000000SAMN24274073
57667_ID1772_5-Ea_05_26_S45_L001
GCA_023184385.1ScaffoldJAJTMU000000000SAMN24274072
57666_ID1772_4-Ea_05_21_S44_L001
GCA_023184375.1ScaffoldJAJTMR000000000SAMN24274075
57669_ID1772_7-Ea_06_13_S47_L001
SRA Data Details
ParameterValue
Data volume, Gbases44
Data volume, Mbytes15656

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