Enterobacterales (ID 836696) - BioProject

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Accession: PRJNA836696 ID: 836696

Enterobacterales

Carbapenem Non-Susceptible Enterobacterales at University of Texas MD Anderson Cancer Center

Repository of genomic data for carbapenem non-susceptible Enterobacterales infections at the University of Texas MD Anderson Cancer Center.

Accession	PRJNA836696
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Shropshire WC et al., "Systematic Analysis of Mobile Genetic Elements Mediating β-Lactamase Gene Amplification in Noncarbapenemase-Producing Carbapenem-Resistant Enterobacterales Bloodstream Infections.", mSystems, 2022 Oct 26;7(5):e0047622
Submission	Registration date: 9-May-2022 University of Texas MD Anderson Cancer Center
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	309
WGS master	13
Genomic DNA	296
SRA Experiments	205
Protein Sequences	351604
Publications
PubMed	1
PMC	1
Other datasets
BioSample	127
Assembly	84

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Contig

Total

71
13
84

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_024752095.1	JANTOF000000000		SAMN28174039	MB5058	Citrobacter freundii
GCA_024752235.1	JANTNY000000000		SAMN28174087	MB8306	Citrobacter portucalensis
GCA_024917675.1		4	SAMN28174002	2497	Enterobacter asburiae
GCA_024917615.1		3	SAMN28174020	3143	Enterobacter cloacae
GCA_024752215.1	JANTOE000000000		SAMN28174033	MB5334	Enterobacter hormaechei
GCA_024752195.1	JANTNZ000000000		SAMN28174071	MB8139	Enterobacter hormaechei
GCA_024917395.1		2	SAMN28174055	4285	Enterobacter hormaechei
GCA_024917635.1		3	SAMN28174063	4453	Enterobacter hormaechei
GCA_024917315.1		2	SAMN28173991	1074	Enterobacter hormaechei
GCA_024918795.1		5	SAMN28174019	3131	Enterobacter hormaechei
GCA_024918255.1		4	SAMN28174037	ST90	Enterobacter hormaechei
GCA_024918215.1		4	SAMN28174038	MB4528 Variant	Enterobacter hormaechei
GCA_024917775.1		5	SAMN28173982	70	Enterobacter hormaechei
GCA_024917275.1		2	SAMN28174056	4314	Escherichia coli
GCA_024917235.1		7	SAMN28174015	3045	Escherichia coli
GCA_024917375.1		1	SAMN28174016	3059	Escherichia coli
GCA_024917355.1		9	SAMN28174075	4848	Escherichia coli
GCA_024917335.1		2	SAMN28174077	4993	Escherichia coli O25b:H4-ST131
GCA_024917535.1		3	SAMN28174072	4750	Escherichia coli
GCA_024917475.1		2	SAMN28174010	2900	Escherichia coli
GCA_024917455.1		4	SAMN28174053	4224	Escherichia coli O25b:H4-ST131
GCA_024917655.1		6	SAMN28174091	5283	Escherichia coli
GCA_024917735.1		7	SAMN28174054	4238	Escherichia coli
GCA_024917715.1		8	SAMN28174065	4621	Escherichia coli
GCA_024917815.1		4	SAMN28174088	5264	Escherichia coli
GCA_024917795.1		4	SAMN28174089	5270	Escherichia coli
GCA_024917895.1		4	SAMN28174099	5506	Escherichia coli O25b:H4-ST131
GCA_024918155.1		1	SAMN28174050	4069	Escherichia coli
GCA_024918135.1		11	SAMN28174076	4973	Escherichia coli
GCA_024918115.1		3	SAMN28174092	5392	Escherichia coli O25b:H4-ST131
GCA_024918035.1		4	SAMN28174012	3036	Escherichia coli
GCA_024918015.1		8	SAMN28174006	2779 - blood draw same patient as MB9267	Escherichia coli
GCA_024917995.1		6	SAMN28174017	3090	Escherichia coli
GCA_024917975.1		5	SAMN28173988	751	Escherichia coli O25b:H4-ST131
GCA_024917955.1		6	SAMN28174095	5444	Escherichia coli
GCA_024918195.1		3	SAMN28174042	3985	Escherichia coli
GCA_024918235.1		4	SAMN28174028	ST131	Escherichia coli O25b:H4-ST131
GCA_024918335.1		6	SAMN28174001	ST361	Escherichia coli
GCA_024918295.1		9	SAMN28173990	961	Escherichia coli
GCA_024918275.1		7	SAMN28174046	4012	Escherichia coli
GCA_024918775.1		3	SAMN28174032	3359	Escherichia coli
GCA_024918755.1		3	SAMN28174027	ST12468	Escherichia coli
GCA_024918415.1		1	SAMN28174062	4433	Escherichia coli O25b:H4-ST131
GCA_024918395.1		3	SAMN28174008	2822	Escherichia coli O25b:H4-ST131
GCA_024918375.1		7	SAMN28174021	3150	Escherichia coli
GCA_024918815.1		4	SAMN28173996	1579	Escherichia coli
GCA_024752275.1	JANTNX000000000		SAMN28174079	MB8866	Escherichia coli
GCA_024752125.1	JANTOA000000000		SAMN28174083	MB8134	Escherichia coli
GCA_024752035.1	JANTNW000000000		SAMN28174034	MB9392	Escherichia coli
GCA_024918355.1		8	SAMN28174061	4417	Klebsiella aerogenes
GCA_024917575.1		3	SAMN28173987	722	Klebsiella aerogenes
GCA_024917295.1		3	SAMN28174081	5088	Klebsiella michiganensis
GCA_024918735.1		4	SAMN28173998	ST34	Klebsiella oxytoca
GCA_024752015.1	JANTOD000000000		SAMN28174051	MB5951	Klebsiella pneumoniae
GCA_024752135.1	JANTOB000000000		SAMN28173986	MB7530	Klebsiella pneumoniae
GCA_024752115.1	JANTOC000000000		SAMN28174029	MB6413	Klebsiella pneumoniae
GCA_024752255.1	JANTOG000000000		SAMN28173999	MB4365	Klebsiella pneumoniae
GCA_024752145.1	JANTOH000000000		SAMN28174106	KB346	Klebsiella pneumoniae
GCA_024918315.1		3	SAMN28173992	1159	Klebsiella pneumoniae
GCA_024918175.1		2	SAMN28173985	433	Klebsiella pneumoniae
GCA_024917935.1		5	SAMN28173997	ST307	Klebsiella pneumoniae
GCA_024917915.1		3	SAMN28174100	5531	Klebsiella pneumoniae
GCA_024918095.1		3	SAMN28174011	2946	Klebsiella pneumoniae
GCA_024918075.1		4	SAMN28174007	2791	Klebsiella pneumoniae
GCA_024918055.1		2	SAMN28174045	3987	Klebsiella pneumoniae
GCA_024917875.1		2	SAMN28174085	5165	Klebsiella pneumoniae
GCA_024917855.1		4	SAMN28174060	4386	Klebsiella pneumoniae
GCA_024917835.1		5	SAMN28174102	5547	Klebsiella pneumoniae
GCA_024917755.1		4	SAMN28174104	5589	Klebsiella pneumoniae
GCA_024918875.1		8	SAMN28173989	913	Klebsiella pneumoniae
GCA_024918855.1		2	SAMN28173983	197	Klebsiella pneumoniae
GCA_024918835.1		2	SAMN28174000	2289	Klebsiella pneumoniae
GCA_024918475.1		2	SAMN28174003	ST3576	Klebsiella pneumoniae
GCA_024918455.1		3	SAMN28173993	ST307	Klebsiella pneumoniae
GCA_024918435.1		4	SAMN28174030	ST15	Klebsiella pneumoniae
GCA_024917255.1		3	SAMN28174066	4680	Klebsiella pneumoniae
GCA_024917555.1		4	SAMN28174025	3221	Klebsiella pneumoniae
GCA_024917595.1		3	SAMN28174058	4383	Klebsiella pneumoniae
GCA_024917435.1		4	SAMN28173994	1498	Klebsiella pneumoniae
GCA_024917415.1		3	SAMN28174049	4014	Klebsiella pneumoniae
GCA_024917515.1		3	SAMN28174070	4737	Klebsiella pneumoniae
GCA_024917495.1		4	SAMN28174036	3571	Klebsiella pneumoniae
GCA_024917695.1		7	SAMN28174098	5463	Klebsiella quasipneumoniae subsp. quasipneumoniae
GCA_024754635.1	JANTPL000000000		SAMN28174103	MB10493	Serratia marcescens

SRA Data Details

Parameter	Value
Data volume, Gbases	212
Data volume, Tbytes	0.12

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Enterobacterales

Carbapenem Non-Susceptible Enterobacterales at University of Texas MD Anderson Cancer Center

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