plastic metagenome (ID 885412) - BioProject

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Accession: PRJNA885412 ID: 885412

plastic metagenome

Metagenomes of North Sea enrichments degrading PBS

In the study the capability of a North Sea derived enrichment culture to degrade different biodegradable plastics was investigated. Also enzymes involved in the degradation were identified and investigated further.

Accession	PRJNA885412
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	plastic metagenome[Taxonomy ID: 2014073] unclassified sequences; metagenomes; ecological metagenomes; plastic metagenome
Publications	Meyer Cifuentes IE et al., "Comparative biodegradation analysis of three compostable polyesters by a marine microbial community.", Appl Environ Microbiol, 2023 Dec 21;89(12):e0106023
Submission	Registration date: 27-Dec-2023 German Collection of Microorganisms and Cell Cultures GmbH
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	35
SRA Experiments	24
Publications
PubMed	1
PMC	1
Other datasets
BioSample	59
Assembly	35

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

35
35

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_034670245.1	JAXMNW000000000	SAMN31159175	EC_MBin.25	Acidimicrobiales bacterium
GCA_034670225.1	JAXMNV000000000	SAMN31159174	EC_MBin.24	Alcanivorax sp.
GCA_034669985.1	JAXMOI000000000	SAMN31159187	EC_MBin.49	Alphaproteobacteria bacterium
GCA_034670045.1	JAXMOF000000000	SAMN31159184	EC_MBin.43	Amylibacter sp.
GCA_034669805.1	JAXMOO000000000	SAMN31159193	PB_MBin.29	Amylibacter sp.
GCA_034670325.1	JAXMNR000000000	SAMN31159170	EC_MBin.6	Antarctobacter sp.
GCA_034669965.1	JAXMOK000000000	SAMN31159189	EC_MBin.52	Balneolaceae bacterium
GCA_034669905.1	JAXMOL000000000	SAMN31159190	EC_MBin.53	Candidatus Hydrogenedentota bacterium
GCA_034669935.1	JAXMOJ000000000	SAMN31159188	EC_MBin.50	Cephaloticoccus sp.
GCA_034670025.1	JAXMOE000000000	SAMN31159183	EC_MBin.42	Chlorobiota bacterium
GCA_034670305.1	JAXMNT000000000	SAMN31159172	EC_MBin.16	Deltaproteobacteria bacterium
GCA_034670265.1	JAXMNU000000000	SAMN31159173	EC_MBin.22	Flavobacteriaceae bacterium
GCA_034669605.1	JAXMOX000000000	SAMN31159202	PC_MBin.33	Leisingera sp.
GCA_034670125.1	JAXMOC000000000	SAMN31159181	EC_MBin.40	Maricaulis sp.
GCA_034670145.1	JAXMOA000000000	SAMN31159179	EC_MBin.35	Marinibacterium sp.
GCA_034669625.1	JAXMOY000000000	SAMN31159203	PC_MBin.48	Marinobacter sp.
GCA_034669785.1	JAXMOS000000000	SAMN31159197	PB_MBin.43	Marinobacter sp.
GCA_034669705.1	JAXMOR000000000	SAMN31159196	PB_MBin.42	Marinovum sp.
GCA_034670185.1	JAXMNY000000000	SAMN31159177	EC_MBin.30	Nisaea sp.
GCA_034670285.1	JAXMNS000000000	SAMN31159171	EC_MBin.7	Nocardioides sp.
GCA_034670345.1	JAXMNQ000000000	SAMN31159169	EC_MBin.3	Paracoccaceae bacterium
GCA_034669745.1	JAXMOP000000000	SAMN31159194	PB_MBin.30	Parasphingorhabdus sp.
GCA_034670195.1	JAXMNX000000000	SAMN31159176	EC_MBin.27	Pontimonas sp.
GCA_034669665.1	JAXMOV000000000	SAMN31159200	PC_MBin.19	Porticoccus hydrocarbonoclasticus
GCA_034670165.1	JAXMNZ000000000	SAMN31159178	EC_MBin.31	Pseudomonas sp.
GCA_034670065.1	JAXMOG000000000	SAMN31159185	EC_MBin.44	Pseudoprimorskyibacter sp.
GCA_034670085.1	JAXMOD000000000	SAMN31159182	EC_MBin.41	Psychroserpens sp.
GCA_034669645.1	JAXMOW000000000	SAMN31159201	PC_MBin.21	Rhizobiaceae bacterium
GCA_034669765.1	JAXMOQ000000000	SAMN31159195	PB_MBin.40	Roseivirga sp.
GCA_034669685.1	JAXMOU000000000	SAMN31159199	PC_MBin.17	Sneathiella sp.
GCA_034669725.1	JAXMOT000000000	SAMN31159198	PC_MBin.7	Sulfitobacter litoralis
GCA_034670105.1	JAXMOB000000000	SAMN31159180	EC_MBin.38	Sulfitobacter sp.
GCA_034669925.1	JAXMOM000000000	SAMN31159191	PB_MBin.9	Sulfitobacter sp.
GCA_034670005.1	JAXMOH000000000	SAMN31159186	EC_MBin.47	Thalassovita sp.
GCA_034669885.1	JAXMON000000000	SAMN31159192	PB_MBin.16	Thalassovita sp.

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plastic metagenome

Metagenomes of North Sea enrichments degrading PBS

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