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Accession: PRJNA885798 ID: 885798

V. cholerae transcriptome or deleted for the tgt gene in MH, supplemented or not with tobramycin or ciprofloxacin

See Genome Information for Vibrio cholerae
We study gene expression levels of V. cholerae N16961 WT and tgt mutant strains in MH medium in the presence or not of sublethal concentration on tobramycin or ciprofloxacin Overall design: Bacterial cells were grown to OD 0,3 and RNAseq was performed.
AccessionPRJNA885798; GEO: GSE214520
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
OrganismVibrio cholerae O1 biovar El Tor str. N16961[Taxonomy ID: 243277]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Vibrionales; Vibrionaceae; Vibrio; Vibrio cholerae; Vibrio cholerae O1 biovar El Tor str. N16961
SubmissionRegistration date: 30-Sep-2022
Plasticité du Génome Bactérien, Génomes et Génétique, Institut Pasteur
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments18
Other datasets
BioSample18
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes2
SRA Data Details
ParameterValue
Data volume, Gbases20
Data volume, Mbytes6724

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