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Accession: PRJNA896475 ID: 896475

Kingella

Phylogenomic characterization of K. kingae

Kingella kingae is an emerging pediatric pathogen that is commonly found in the oropharynx of children < 48 months of age. While most children tolerate colonization without complications, a subset develop severe invasive disease, such as septic arthritis, osteomyelitis, or endocarditis. This study sought to define genetic determinants associated with virulence in the K. kingae population by generating assembled genomes for a large collection of clinical isolates.
AccessionPRJNA896475
Data TypeGenome sequencing and assembly
ScopeMultispecies
OrganismKingella[Taxonomy ID: 32257]
Bacteria; Pseudomonadati; Pseudomonadota; Betaproteobacteria; Neisseriales; Neisseriaceae; Kingella
SubmissionRegistration date: 6-Jun-2023
University of Pennsylvania
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)86
WGS master84
Genomic DNA2
SRA Experiments113
Protein Sequences4352
Other datasets
BioSample101
Assembly86
Assembly details:
Assembly levelNumber of Assemblies
2
84
86
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_030180365.1ContigJARXSD000000000
SAMN31544715
AA038
GCA_030180345.1ContigJARXSG000000000
SAMN31544718
AA392
GCA_030180315.1ContigJARXSI000000000
SAMN31544720
AA392D9
GCA_030180305.1ContigJARXSH000000000
SAMN31544719
AA392C5
GCA_030180275.1ContigJARXSJ000000000
SAMN31544721
AA392U8
GCA_030180265.1ContigJARXSP000000000
SAMN31544730
BB270
GCA_030180225.1ContigJARXSL000000000
SAMN31544724
AA478
GCA_030180215.1ContigJARXSK000000000
SAMN31544722
AA393
GCA_030180205.1ContigJARXSN000000000
SAMN31544728
BB149
GCA_030180375.1ContigJARXSE000000000
SAMN31544716
AA080
GCA_030182405.1ContigJARXSB000000000
SAMN31544713
AA010
GCA_030182345.1ContigJARXSO000000000
SAMN31544729
BB237
GCA_030182385.1ContigJARXSF000000000
SAMN31544717
AA097
GCA_030182365.1ContigJARXSC000000000
SAMN31544714
AA026
GCA_030182315.1ContigJARXSQ000000000
SAMN31544731
BB285
GCA_030182305.1ContigJARXSM000000000
SAMN31544725
AA574
GCA_030182285.1ContigJARXSR000000000
SAMN31544732
BB300
GCA_030182255.1ContigJARXST000000000
SAMN31544736
D7453
GCA_030182245.1ContigJARXSU000000000
SAMN31544737
IDOBlood
GCA_030182225.1ContigJARXSS000000000
SAMN31544734
CC062
GCA_030182205.1ContigJARXSV000000000
SAMN31544738
IDOPH1
GCA_030182185.1ContigJARXSW000000000
SAMN31544739
IDOPH2
GCA_030182155.1ContigJARXSX000000000
SAMN31544740
ItzBlood
GCA_030182145.1ContigJARXSY000000000
SAMN31544741
ItzPH1
GCA_030182125.1ContigJARXSZ000000000
SAMN31544742
KK129
GCA_030182105.1ContigJARXTB000000000
SAMN31544744
KahiriPH1
GCA_030182085.1ContigJARXTA000000000
SAMN31544743
KahiriBlood
GCA_030182065.1ContigJARXTC000000000
SAMN31544745
KK01
GCA_030182025.1ContigJARXTE000000000
SAMN31544775
KK100
GCA_030182015.1ContigJARXTF000000000
SAMN31544776
KK101
GCA_030182005.1ContigJARXTD000000000
SAMN31544748
KK03
GCA_030181985.1ContigJARXTG000000000
SAMN31544777
KK103
GCA_030181965.1ContigJARXTH000000000
SAMN31544778
KK104
GCA_030181915.1ContigJARXTK000000000
SAMN31544781
KK123
GCA_030181925.1ContigJARXTI000000000
SAMN31544779
KK119
GCA_030181905.1ContigJARXTJ000000000
SAMN31544780
KK120
GCA_030181885.1ContigJARXTL000000000
SAMN31544782
KK124
GCA_030181865.1ContigJARXTM000000000
SAMN31544783
PYKK125
GCA_030181845.1ContigJARXTN000000000
SAMN31544785
KK138
GCA_030181815.1ContigJARXTP000000000
SAMN31544787
KK171
GCA_030181805.1ContigJARXTO000000000
SAMN31544751
KK16
GCA_030181785.1ContigJARXTR000000000
SAMN31544752
KK19
GCA_030181765.1ContigJARXTQ000000000
SAMN31544788
KK181
GCA_030181745.1ContigJARXTS000000000
SAMN31544790
KK197
GCA_030181715.1ContigJARXTT000000000
SAMN31544746
KK2
GCA_030181705.1ContigJARXTU000000000
SAMN31544792
KK200
GCA_030181675.1ContigJARXTV000000000
SAMN31544753
KK21
GCA_030181665.1ContigJARXTW000000000
SAMN31544793
KK243
GCA_030181645.1ContigJARXTX000000000
SAMN31544754
KK29
GCA_030181625.1ContigJARXTY000000000
SAMN31544755
KK48
GCA_030181575.1ContigJARXUA000000000
SAMN31544757
KK57
GCA_030181595.1ContigJARXTZ000000000
SAMN31544756
KK56
GCA_030181565.1ContigJARXUB000000000
SAMN31544749
KK6
GCA_030181545.1ContigJARXUC000000000
SAMN31544759
KK61
GCA_030181525.1ContigJARXUD000000000
SAMN31544760
KK63
GCA_030181505.1ContigJARXUE000000000
SAMN31544761
KK64
GCA_030181475.1ContigJARXUG000000000
SAMN31544763
KK68
GCA_030181465.1ContigJARXUF000000000
SAMN31544762
KK65
GCA_030181445.1ContigJARXUH000000000
SAMN31544764
KK69
GCA_030181425.1ContigJARXUI000000000
SAMN31544765
KK70
GCA_030181405.1ContigJARXUJ000000000
SAMN31544766
KK79
GCA_030181365.1ContigJARXUL000000000
SAMN31544768
KK82
GCA_030181355.1ContigJARXUK000000000
SAMN31544767
KK80
GCA_030181345.1ContigJARXUM000000000
SAMN31544769
KK86
GCA_030181325.1ContigJARXUP000000000
SAMN31544772
KK94
GCA_030181305.1ContigJARXUN000000000
SAMN31544770
KK92
GCA_030181285.1ContigJARXUO000000000
SAMN31544771
KK93
GCA_030181245.1ContigJARXUR000000000
SAMN31544774
KK97
GCA_030181255.1ContigJARXUQ000000000
SAMN31544773
KK96
GCA_030181205.1ContigJARXUT000000000
SAMN31544795
PYP8
GCA_030181195.1ContigJARXUS000000000
SAMN31544794
PYHERBlood
GCA_030181185.1ContigJARXUV000000000
SAMN31544799
UnkA
GCA_030181155.1ContigJARXUU000000000
SAMN31544796
Sch187
GCA_030181145.1ContigJARXUW000000000
SAMN31544800
UnkB
GCA_030181115.1ContigJARWIH000000000
SAMN31580847
PVC1712
GCA_030181105.1ContigJARWIF000000000
SAMN31580844
D7641
GCA_030181045.1ContigJARWIE000000000
SAMN31580842
CC505b
GCA_030181065.1ContigJARWIG000000000
SAMN31580846
PED555
GCA_030181055.1ContigJARWMT000000000
SAMN31580845
EPA014
GCA_030180985.1ContigJARWMR000000000
SAMN31580838
BB331
GCA_030180995.1ContigJARWMS000000000
SAMN31580839
BB526
GCA_030180965.1ContigJARWIB000000000
SAMN31580837
AA267
GCA_030180955.1ContigJARWIC000000000
SAMN31580840
CC132
GCA_030180945.1ContigJARWID000000000
SAMN31580841
CC443
GCA_030177895.1ChromosomeSAMN31580848
SW7208426
GCA_030177875.1ChromosomeSAMN31580843
D2292
SRA Data Details
ParameterValue
Data volume, Gbases30
Data volume, Mbytes11613

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