ID 896854 - BioProject

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Accession: PRJEB57209 ID: 896854

EMG produced TPA metagenomics assembly of PRJNA738554 data set (The influence of the low-iron diet and the protective effect of Lactobacillus casei Zhang from the perspective of gut microbiota).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA738554, and was assembled with metaSPAdes v3. More...

Accession	PRJEB57209
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 2-Nov-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	3190
WGS master	144
Publications
PubMed	1
PMC	1
Other datasets
BioSample	144
Assembly	144

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

144
144

Assembly	WGS	BioSample	Taxonomy
GCA_947365015.1	CANAVV000000000	SAMEA112143973	Acutalibacter muris
GCA_947365545.1	CANAXL000000000	SAMEA112143969	Acutalibacter muris
GCA_947365505.1	CANAXG000000000	SAMEA112144026	Akkermansia muciniphila
GCA_947364175.1	CANARW000000000	SAMEA112143987	Alistipes finegoldii
GCA_947365065.1	CANAVO000000000	SAMEA112144000	Alistipes timonensis
GCA_947363315.1	CANAOU000000000	SAMEA112143971	Bacteroides acidifaciens
GCA_947365955.1	CANAYX000000000	SAMEA112144058	Bacteroides intestinalis
GCA_947364995.1	CANAUV000000000	SAMEA112143936	Bifidobacterium animalis
GCA_947364195.1	CANARX000000000	SAMEA112144064	Bifidobacterium pseudolongum
GCA_947363265.1	CANAOW000000000	SAMEA112144004	Escherichia coli
GCA_947364415.1	CANASY000000000	SAMEA112144048	Faecalibaculum rodentium
GCA_947364255.1	CANASD000000000	SAMEA112143985	Flavonifractor plautii
GCA_947364925.1	CANAUP000000000	SAMEA112144024	Helicobacter cinaedi
GCA_947365795.1	CANAXW000000000	SAMEA112144044	Helicobacter japonicus
GCA_947365055.1	CANAVJ000000000	SAMEA112143983	Lactobacillus taiwanensis
GCA_947364495.1	CANATH000000000	SAMEA112144059	Morganella morganii
GCA_947363425.1	CANAOS000000000	SAMEA112143938	Mucispirillum schaedleri
GCA_947365715.1	CANAYF000000000	SAMEA112143945	Muribaculum intestinale
GCA_947363825.1	CANAPT000000000	SAMEA112143999	Parabacteroides distasonis
GCA_947364385.1	CANASR000000000	SAMEA112144040	Parabacteroides goldsteinii
GCA_947365675.1	CANAYL000000000	SAMEA112143946	Parvibacter caecicola
GCA_947364115.1	CANARU000000000	SAMEA112143992	Thomasclavelia cocleata
GCA_947363755.1	CANAQH000000000	SAMEA112144022	Turicimonas muris
GCA_947363535.1	CANAPQ000000000	SAMEA112143997	[Clostridium] innocuum
GCA_947364365.1	CANASP000000000	SAMEA112144039	uncultured Alistipes sp.
GCA_947363345.1	CANAOP000000000	SAMEA112144006	uncultured Alistipes sp.
GCA_947365045.1	CANAVK000000000	SAMEA112143958	uncultured Alistipes sp.
GCA_947364285.1	CANASH000000000	SAMEA112144029	uncultured Alistipes sp.
GCA_947364815.1	CANAUN000000000	SAMEA112144007	uncultured Alistipes sp.
GCA_947365495.1	CANAXF000000000	SAMEA112143961	uncultured Alistipes sp.
GCA_947365625.1	CANAXH000000000	SAMEA112144063	uncultured Alphaproteobacteria bacterium
GCA_947364005.1	CANARF000000000	SAMEA112143974	uncultured Anaerotruncus sp.
GCA_947364445.1	CANATA000000000	SAMEA112144051	uncultured Angelakisella sp.
GCA_947365775.1	CANAYD000000000	SAMEA112143998	uncultured Angelakisella sp.
GCA_947363665.1	CANAPZ000000000	SAMEA112144020	uncultured Azospirillum sp.
GCA_947363645.1	CANAQG000000000	SAMEA112143996	uncultured Bacillota bacterium
GCA_947364595.1	CANATJ000000000	SAMEA112144071	uncultured Bacillota bacterium
GCA_947364135.1	CANARV000000000	SAMEA112143948	uncultured Bacillota bacterium
GCA_947364405.1	CANAST000000000	SAMEA112144023	uncultured Bacillota bacterium
GCA_947363355.1	CANAPE000000000	SAMEA112143965	uncultured Bacillota bacterium
GCA_947365855.1	CANAYM000000000	SAMEA112143941	uncultured Bacillota bacterium
GCA_947364275.1	CANASG000000000	SAMEA112143991	uncultured Bacteroidales bacterium
GCA_947365595.1	CANAXI000000000	SAMEA112144050	uncultured Bacteroidales bacterium
GCA_947364505.1	CANATB000000000	SAMEA112144072	uncultured Bacteroidales bacterium
GCA_947364525.1	CANATC000000000	SAMEA112144066	uncultured Bacteroidales bacterium
GCA_947365515.1	CANAXJ000000000	SAMEA112144018	uncultured Bacteroides sp.
GCA_947364265.1	CANASF000000000	SAMEA112143984	uncultured Bacteroides sp.
GCA_947364235.1	CANARY000000000	SAMEA112143950	uncultured Candidatus Melainabacteria bacterium
GCA_947364515.1	CANATE000000000	SAMEA112144065	uncultured Candidatus Saccharibacteria bacterium
GCA_947363685.1	CANAQL000000000	SAMEA112143957	uncultured Clostridia bacterium
GCA_947363605.1	CANAQK000000000	SAMEA112144033	uncultured Clostridia bacterium
GCA_947363935.1	CANAQY000000000	SAMEA112143959	uncultured Clostridia bacterium
GCA_947365195.1	CANAWA000000000	SAMEA112144038	uncultured Clostridia bacterium
GCA_947365215.1	CANAWD000000000	SAMEA112144069	uncultured Clostridia bacterium
GCA_947365975.1	CANAYZ000000000	SAMEA112144041	uncultured Clostridia bacterium
GCA_947365075.1	CANAVP000000000	SAMEA112144012	uncultured Clostridia bacterium
GCA_947365205.1	CANAWB000000000	SAMEA112144036	uncultured Clostridia bacterium
GCA_947364555.1	CANATP000000000	SAMEA112144075	uncultured Clostridia bacterium
GCA_947365115.1	CANAVT000000000	SAMEA112144009	uncultured Clostridia bacterium
GCA_947363975.1	CANARE000000000	SAMEA112143960	uncultured Clostridia bacterium
GCA_947365165.1	CANAVI000000000	SAMEA112144005	uncultured Clostridia bacterium
GCA_947363325.1	CANAPF000000000	SAMEA112143962	uncultured Clostridia bacterium
GCA_947364015.1	CANARI000000000	SAMEA112143968	uncultured Clostridia bacterium
GCA_947363505.1	CANAPK000000000	SAMEA112143964	uncultured Clostridia bacterium
GCA_947365225.1	CANAWC000000000	SAMEA112144053	uncultured Clostridia bacterium
GCA_947366025.1	CANAYU000000000	SAMEA112144011	uncultured Clostridia bacterium
GCA_947365695.1	CANAXS000000000	SAMEA112143933	uncultured Clostridia bacterium
GCA_947364215.1	CANARZ000000000	SAMEA112143943	uncultured Clostridia bacterium
GCA_947366005.1	CANAZD000000000	SAMEA112143937	uncultured Clostridia bacterium
GCA_947364475.1	CANATG000000000	SAMEA112144055	uncultured Clostridium sp.
GCA_947363815.1	CANAPR000000000	SAMEA112144049	uncultured Clostridium sp.
GCA_947365635.1	CANAYE000000000	SAMEA112143935	uncultured Clostridium sp.
GCA_947363675.1	CANAQO000000000	SAMEA112144013	uncultured Clostridium sp.
GCA_947363785.1	CANAPX000000000	SAMEA112144001	uncultured Coriobacteriaceae bacterium
GCA_947365535.1	CANAXD000000000	SAMEA112144062	uncultured Coriobacteriaceae bacterium
GCA_947364145.1	CANARQ000000000	SAMEA112143956	uncultured Desulfovibrio sp.
GCA_947363835.1	CANAPW000000000	SAMEA112143994	uncultured Desulfovibrio sp.
GCA_947364155.1	CANART000000000	SAMEA112144027	uncultured Desulfovibrio sp.
GCA_947363445.1	CANAOR000000000	SAMEA112144003	uncultured Dorea sp.
GCA_947366115.1	CANAZP000000000	SAMEA112143951	uncultured Dorea sp.
GCA_947366155.1	CANAZQ000000000	SAMEA112144056	uncultured Dorea sp.
GCA_947365125.1	CANAVZ000000000	SAMEA112143947	uncultured Dorea sp.
GCA_947365555.1	CANAXP000000000	SAMEA112143954	uncultured Dorea sp.
GCA_947363375.1	CANASU000000000	SAMEA112143977	uncultured Erysipelotrichaceae bacterium
GCA_947365145.1	CANAVR000000000	SAMEA112143978	uncultured Faecalibaculum sp.
GCA_947363395.1	CANAOZ000000000	SAMEA112144010	uncultured Flavobacteriales bacterium
GCA_947365585.1	CANAXN000000000	SAMEA112144008	uncultured Flavonifractor sp.
GCA_947363775.1	CANAPY000000000	SAMEA112144014	uncultured Helicobacter sp.
GCA_947365365.1	CANAWQ000000000	SAMEA112144043	uncultured Lachnoclostridium sp.
GCA_947364315.1	CANASM000000000	SAMEA112143989	uncultured Lachnoclostridium sp.
GCA_947364375.1	CANASQ000000000	SAMEA112144034	uncultured Lachnoclostridium sp.
GCA_947365085.1	CANAVU000000000	SAMEA112144031	uncultured Lachnospiraceae bacterium
GCA_947364455.1	CANASW000000000	SAMEA112144045	uncultured Lachnospiraceae bacterium
GCA_947363885.1	CANAQV000000000	SAMEA112143939	uncultured Lachnospiraceae bacterium
GCA_947365605.1	CANAXR000000000	SAMEA112143972	uncultured Lachnospiraceae bacterium
GCA_947365645.1	CANAXZ000000000	SAMEA112143942	uncultured Lachnospiraceae bacterium
GCA_947365095.1	CANAVX000000000	SAMEA112143966	uncultured Lachnospiraceae bacterium
GCA_947364345.1	CANASL000000000	SAMEA112144032	uncultured Lachnospiraceae bacterium
GCA_947365725.1	CANAYH000000000	SAMEA112143949	uncultured Lachnospiraceae bacterium
GCA_947365985.1	CANAZA000000000	SAMEA112143940	uncultured Lachnospiraceae bacterium
GCA_947364105.1	CANARP000000000	SAMEA112143970	uncultured Lachnospiraceae bacterium
GCA_947363455.1	CANAPG000000000	SAMEA112144002	uncultured Lachnospiraceae bacterium
GCA_947365135.1	CANAVM000000000	SAMEA112143995	uncultured Lactobacillus sp.
GCA_947365565.1	CANAXM000000000	SAMEA112143988	uncultured Lactobacillus sp.
GCA_947365155.1	CANAVS000000000	SAMEA112144017	uncultured Mollicutes bacterium
GCA_947365035.1	CANAVQ000000000	SAMEA112144025	uncultured Mollicutes bacterium
GCA_947363865.1	CANAQM000000000	SAMEA112143981	uncultured Mollicutes bacterium
GCA_947365575.1	CANAXE000000000	SAMEA112143990	uncultured Mollicutes bacterium
GCA_947363465.1	CANAPH000000000	SAMEA112143982	uncultured Mucispirillum sp.
GCA_947363585.1	CANAQD000000000	SAMEA112144035	uncultured Muribaculaceae bacterium
GCA_947364125.1	CANARS000000000	SAMEA112143934	uncultured Muribaculaceae bacterium
GCA_947365175.1	CANAVW000000000	SAMEA112143993	uncultured Muribaculaceae bacterium
GCA_947364485.1	CANATD000000000	SAMEA112144057	uncultured Muribaculaceae bacterium
GCA_947365615.1	CANAXO000000000	SAMEA112144070	uncultured Muribaculaceae bacterium
GCA_947363515.1	CANAPL000000000	SAMEA112144054	uncultured Muribaculaceae bacterium
GCA_947363485.1	CANAPJ000000000	SAMEA112143979	uncultured Muribaculaceae bacterium
GCA_947363285.1	CANAOQ000000000	SAMEA112143967	uncultured Odoribacter sp.
GCA_947364425.1	CANASZ000000000	SAMEA112144042	uncultured Oscillibacter sp.
GCA_947364435.1	CANASX000000000	SAMEA112144046	uncultured Oscillibacter sp.
GCA_947365185.1	CANAVY000000000	SAMEA112144021	uncultured Oscillibacter sp.
GCA_947363895.1	CANAQT000000000	SAMEA112144074	uncultured Parabacteroides sp.
GCA_947366075.1	CANAYW000000000	SAMEA112143980	uncultured Porphyromonadaceae bacterium
GCA_947365755.1	CANAXY000000000	SAMEA112144028	uncultured Porphyromonadaceae bacterium
GCA_947363855.1	CANAQE000000000	SAMEA112144061	uncultured Porphyromonadaceae bacterium
GCA_947363875.1	CANAQW000000000	SAMEA112144047	uncultured Porphyromonadaceae bacterium
GCA_947363385.1	CANAPB000000000	SAMEA112144076	uncultured Porphyromonadaceae bacterium
GCA_947365525.1	CANAXQ000000000	SAMEA112144037	uncultured Porphyromonadaceae bacterium
GCA_947364065.1	CANARM000000000	SAMEA112143986	uncultured Porphyromonadaceae bacterium
GCA_947364865.1	CANAVB000000000	SAMEA112144073	uncultured Porphyromonadaceae bacterium
GCA_947365105.1	CANAVN000000000	SAMEA112143953	uncultured Porphyromonadaceae bacterium
GCA_947366085.1	CANAZN000000000	SAMEA112143944	uncultured Porphyromonadaceae bacterium
GCA_947364535.1	CANATK000000000	SAMEA112144068	uncultured Porphyromonadaceae bacterium
GCA_947364245.1	CANASB000000000	SAMEA112144019	uncultured Rickettsiales bacterium
GCA_947363275.1	CANAPD000000000	SAMEA112143963	uncultured Rikenella sp.
GCA_947364225.1	CANASC000000000	SAMEA112144067	uncultured Rikenellaceae bacterium
GCA_947363725.1	CANAQI000000000	SAMEA112144016	uncultured Thomasclavelia sp.
GCA_947364395.1	CANASS000000000	SAMEA112144030	uncultured bacterium
GCA_947365485.1	CANAXK000000000	SAMEA112143976	uncultured bacterium
GCA_947364085.1	CANARJ000000000	SAMEA112143955	uncultured bacterium
GCA_947363915.1	CANARA000000000	SAMEA112143975	uncultured bacterium
GCA_947364305.1	CANASI000000000	SAMEA112143952	uncultured bacterium
GCA_947364465.1	CANATF000000000	SAMEA112144060	uncultured bacterium
GCA_947363595.1	CANAQQ000000000	SAMEA112144052	uncultured bacterium
GCA_947365025.1	CANAVL000000000	SAMEA112144015	uncultured cyanobacterium

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EMG produced TPA metagenomics assembly of PRJNA738554 data set (The influence of the low-iron diet and the protective effect of Lactobacillus casei Zhang from the perspective of gut microbiota).

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