ID 906426 - BioProject

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Accession: PRJEB57839 ID: 906426

EMG produced TPA metagenomics assembly of PRJNA712972 data set (PIGA gene responsible for GPI anchor biosynthesis : knockout leads to gut microbiome dysbiosis).

The Third Party Annotation (TPA) assembly was derived from the primary whole genome shotgun (WGS) data set PRJNA712972, and was assembled with metaSPAdes v3. More...

Accession	PRJEB57839
Data Type	Genome sequencing and assembly
Scope	Monoisolate
Keyword	TPA:assembly
Publications	Mitchell AL et al., "EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies.", Nucleic Acids Res, 2018 Jan 4;46(D1):D726-D735
Submission	Registration date: 29-Nov-2022 EMG

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	1377
WGS master	199
Publications
PubMed	1
PMC	1
Other datasets
BioSample	199
Assembly	199

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

199
199

Assembly	WGS	BioSample	Taxonomy
GCA_947650385.1	CANSVD000000000	SAMEA112228199	Adlercreutzia equolifaciens
GCA_947567445.1	CANOND000000000	SAMEA112228087	Faecalibaculum rodentium
GCA_947566735.1	CANOKH000000000	SAMEA112228073	Lactobacillus gasseri
GCA_947564845.1	CANOEG000000000	SAMEA112228178	Muribaculum intestinale
GCA_947647765.1	CANSLK000000000	SAMEA112228057	Parvibacter caecicola
GCA_947652425.1	CANTDB000000000	SAMEA112228060	Proteus mirabilis
GCA_947564855.1	CANODY000000000	SAMEA112228029	Romboutsia timonensis
GCA_947644185.1	CANRZC000000000	SAMEA112228172	uncultured Acetatifactor sp.
GCA_947653435.1	CANTHH000000000	SAMEA112228099	uncultured Alistipes sp.
GCA_947564915.1	CANODZ000000000	SAMEA112228053	uncultured Alistipes sp.
GCA_947565285.1	CANOFM000000000	SAMEA112228118	uncultured Allobaculum sp.
GCA_947564495.1	CANOCD000000000	SAMEA112228072	uncultured Angelakisella sp.
GCA_947566155.1	CANOIU000000000	SAMEA112228150	uncultured Bacillota bacterium
GCA_947566255.1	CANOJD000000000	SAMEA112228192	uncultured Bacillota bacterium
GCA_947648065.1	CANSML000000000	SAMEA112228041	uncultured Bacillota bacterium
GCA_947647755.1	CANSLN000000000	SAMEA112228163	uncultured Bacteroidales bacterium
GCA_947645055.1	CANSBP000000000	SAMEA112228130	uncultured Bacteroidales bacterium
GCA_947566225.1	CANOJC000000000	SAMEA112228202	uncultured Bacteroidales bacterium
GCA_947564875.1	CANODK000000000	SAMEA112228195	uncultured Bacteroidales bacterium
GCA_947565295.1	CANOFN000000000	SAMEA112228141	uncultured Bacteroidales bacterium
GCA_947647665.1	CANSLD000000000	SAMEA112228033	uncultured Candidatus Saccharibacteria bacterium
GCA_947653465.1	CANTGZ000000000	SAMEA112228055	uncultured Clostridia bacterium
GCA_947565975.1	CANOIE000000000	SAMEA112228059	uncultured Clostridia bacterium
GCA_947565265.1	CANOFK000000000	SAMEA112228197	uncultured Clostridia bacterium
GCA_947564615.1	CANOCH000000000	SAMEA112228092	uncultured Clostridia bacterium
GCA_947565865.1	CANOHT000000000	SAMEA112228049	uncultured Clostridia bacterium
GCA_947567375.1	CANOLF000000000	SAMEA112228212	uncultured Clostridia bacterium
GCA_947564485.1	CANOCE000000000	SAMEA112228183	uncultured Clostridia bacterium
GCA_947566035.1	CANOIJ000000000	SAMEA112228076	uncultured Clostridia bacterium
GCA_947567585.1	CANONE000000000	SAMEA112228044	uncultured Clostridia bacterium
GCA_947564455.1	CANOCZ000000000	SAMEA112228038	uncultured Clostridia bacterium
GCA_947565195.1	CANOFB000000000	SAMEA112228217	uncultured Clostridia bacterium
GCA_947566205.1	CANOJB000000000	SAMEA112228198	uncultured Clostridia bacterium
GCA_947564405.1	CANOBX000000000	SAMEA112228213	uncultured Clostridia bacterium
GCA_947565315.1	CANOFP000000000	SAMEA112228188	uncultured Clostridia bacterium
GCA_947652665.1	CANTDZ000000000	SAMEA112228185	uncultured Clostridia bacterium
GCA_947647675.1	CANSLG000000000	SAMEA112228043	uncultured Clostridia bacterium
GCA_947652845.1	CANTEQ000000000	SAMEA112228214	uncultured Clostridia bacterium
GCA_947647715.1	CANSLP000000000	SAMEA112228167	uncultured Clostridia bacterium
GCA_947647695.1	CANSLL000000000	SAMEA112228036	uncultured Clostridia bacterium
GCA_947652485.1	CANTDG000000000	SAMEA112228027	uncultured Clostridia bacterium
GCA_947647655.1	CANSLF000000000	SAMEA112228204	uncultured Clostridia bacterium
GCA_947641515.1	CANRQX000000000	SAMEA112228210	uncultured Clostridia bacterium
GCA_947652265.1	CANTCK000000000	SAMEA112228149	uncultured Clostridia bacterium
GCA_947645155.1	CANSBU000000000	SAMEA112228139	uncultured Clostridia bacterium
GCA_947652805.1	CANTEM000000000	SAMEA112228168	uncultured Clostridia bacterium
GCA_947647685.1	CANSLH000000000	SAMEA112228074	uncultured Clostridiaceae bacterium
GCA_947566775.1	CANOKW000000000	SAMEA112228145	uncultured Clostridiaceae bacterium
GCA_947564925.1	CANOEX000000000	SAMEA112228068	uncultured Clostridiaceae bacterium
GCA_948356245.1	CAOJCF000000000	SAMEA112228089	uncultured Clostridium sp.
GCA_947653375.1	CANTHA000000000	SAMEA112228077	uncultured Clostridium sp.
GCA_947566215.1	CANOIZ000000000	SAMEA112228190	uncultured Clostridium sp.
GCA_947565945.1	CANOIB000000000	SAMEA112228031	uncultured Clostridium sp.
GCA_947564445.1	CANOCA000000000	SAMEA112228148	uncultured Clostridium sp.
GCA_947566085.1	CANOIP000000000	SAMEA112228094	uncultured Clostridium sp.
GCA_947652535.1	CANTDK000000000	SAMEA112228028	uncultured Clostridium sp.
GCA_947647415.1	CANSKF000000000	SAMEA112228191	uncultured Clostridium sp.
GCA_947652655.1	CANTDT000000000	SAMEA112228170	uncultured Clostridium sp.
GCA_947646525.1	CANSGW000000000	SAMEA112228079	uncultured Clostridium sp.
GCA_947564325.1	CANOBW000000000	SAMEA112228116	uncultured Coriobacteriaceae bacterium
GCA_947653395.1	CANTHF000000000	SAMEA112228151	uncultured Desulfovibrio sp.
GCA_947566135.1	CANOIT000000000	SAMEA112228154	uncultured Desulfovibrio sp.
GCA_947566005.1	CANOIF000000000	SAMEA112228097	uncultured Dorea sp.
GCA_947564315.1	CANOBY000000000	SAMEA112228075	uncultured Dorea sp.
GCA_947564705.1	CANODD000000000	SAMEA112228023	uncultured Dorea sp.
GCA_947564175.1	CANOBN000000000	SAMEA112228034	uncultured Dorea sp.
GCA_947647815.1	CANSLW000000000	SAMEA112228067	uncultured Dorea sp.
GCA_947566195.1	CANOJA000000000	SAMEA112228113	uncultured Eggerthella sp.
GCA_947566075.1	CANOIM000000000	SAMEA112228083	uncultured Eggerthellaceae bacterium
GCA_947564425.1	CANOBU000000000	SAMEA112228048	uncultured Eggerthellaceae bacterium
GCA_947565915.1	CANOHY000000000	SAMEA112228040	uncultured Eggerthellaceae bacterium
GCA_947564725.1	CANODS000000000	SAMEA112228047	uncultured Eggerthellaceae bacterium
GCA_947565185.1	CANODU000000000	SAMEA112228037	uncultured Eggerthellaceae bacterium
GCA_947652435.1	CANTDC000000000	SAMEA112228039	uncultured Eggerthellaceae bacterium
GCA_947647355.1	CANSJW000000000	SAMEA112228196	uncultured Eggerthellaceae bacterium
GCA_947647705.1	CANSLM000000000	SAMEA112228051	uncultured Eggerthellaceae bacterium
GCA_947653555.1	CANTHO000000000	SAMEA112228209	uncultured Eggerthellaceae bacterium
GCA_947653385.1	CANTHE000000000	SAMEA112228063	uncultured Eggerthellaceae bacterium
GCA_947653415.1	CANTGV000000000	SAMEA112228184	uncultured Enterorhabdus sp.
GCA_947564955.1	CANOEO000000000	SAMEA112228069	uncultured Erysipelotrichaceae bacterium
GCA_947565245.1	CANOFD000000000	SAMEA112228144	uncultured Erysipelotrichaceae bacterium
GCA_947653525.1	CANTHL000000000	SAMEA112228158	uncultured Eubacteriaceae bacterium
GCA_947653505.1	CANTHI000000000	SAMEA112228205	uncultured Eubacterium sp.
GCA_948356845.1	CAOJCJ000000000	SAMEA112228142	uncultured Eubacterium sp.
GCA_947567045.1	CANOKU000000000	SAMEA112228203	uncultured Faecalibacterium sp.
GCA_947650465.1	CANSVJ000000000	SAMEA112228187	uncultured Flavonifractor sp.
GCA_947566015.1	CANOIK000000000	SAMEA112228106	uncultured Hungatella sp.
GCA_947565065.1	CANOEF000000000	SAMEA112228019	uncultured Kosakonia sp.
GCA_947564685.1	CANODL000000000	SAMEA112228062	uncultured Lachnoclostridium sp.
GCA_947565985.1	CANOID000000000	SAMEA112228080	uncultured Lachnoclostridium sp.
GCA_947641875.1	CANRRJ000000000	SAMEA112228160	uncultured Lachnoclostridium sp.
GCA_947564665.1	CANOCM000000000	SAMEA112228161	uncultured Lachnospiraceae bacterium
GCA_947564595.1	CANOCJ000000000	SAMEA112228171	uncultured Lachnospiraceae bacterium
GCA_947567345.1	CANONK000000000	SAMEA112228133	uncultured Lachnospiraceae bacterium
GCA_947564415.1	CANOBS000000000	SAMEA112228026	uncultured Lachnospiraceae bacterium
GCA_947565885.1	CANOHX000000000	SAMEA112228021	uncultured Lachnospiraceae bacterium
GCA_947566905.1	CANOLX000000000	SAMEA112228078	uncultured Lachnospiraceae bacterium
GCA_947566145.1	CANOIV000000000	SAMEA112228119	uncultured Lachnospiraceae bacterium
GCA_947567235.1	CANONI000000000	SAMEA112228128	uncultured Lachnospiraceae bacterium
GCA_947565805.1	CANOHL000000000	SAMEA112228211	uncultured Lachnospiraceae bacterium
GCA_947565995.1	CANOIG000000000	SAMEA112228084	uncultured Lachnospiraceae bacterium
GCA_947565855.1	CANOHU000000000	SAMEA112228025	uncultured Lachnospiraceae bacterium
GCA_947567135.1	CANOLR000000000	SAMEA112228108	uncultured Lachnospiraceae bacterium
GCA_947565305.1	CANOFO000000000	SAMEA112228169	uncultured Lachnospiraceae bacterium
GCA_947564305.1	CANOBT000000000	SAMEA112228093	uncultured Lachnospiraceae bacterium
GCA_947565165.1	CANOEL000000000	SAMEA112228164	uncultured Lachnospiraceae bacterium
GCA_947566705.1	CANOLA000000000	SAMEA112228207	uncultured Lachnospiraceae bacterium
GCA_947564805.1	CANODI000000000	SAMEA112228186	uncultured Lachnospiraceae bacterium
GCA_947565045.1	CANOFC000000000	SAMEA112228122	uncultured Lachnospiraceae bacterium
GCA_947564645.1	CANOCU000000000	SAMEA112228174	uncultured Lachnospiraceae bacterium
GCA_947565255.1	CANOFI000000000	SAMEA112228153	uncultured Lachnospiraceae bacterium
GCA_947564735.1	CANOEC000000000	SAMEA112228070	uncultured Lachnospiraceae bacterium
GCA_947564375.1	CANOCI000000000	SAMEA112228177	uncultured Lachnospiraceae bacterium
GCA_947652645.1	CANTDV000000000	SAMEA112228135	uncultured Lachnospiraceae bacterium
GCA_947652575.1	CANTDP000000000	SAMEA112228032	uncultured Lachnospiraceae bacterium
GCA_947652735.1	CANTEG000000000	SAMEA112228131	uncultured Lachnospiraceae bacterium
GCA_947651385.1	CANSYX000000000	SAMEA112228096	uncultured Lachnospiraceae bacterium
GCA_947645105.1	CANSBR000000000	SAMEA112228126	uncultured Lachnospiraceae bacterium
GCA_947642305.1	CANRSW000000000	SAMEA112228022	uncultured Lachnospiraceae bacterium
GCA_947647795.1	CANSLR000000000	SAMEA112228189	uncultured Lachnospiraceae bacterium
GCA_947651335.1	CANSYV000000000	SAMEA112228216	uncultured Lachnospiraceae bacterium
GCA_947652595.1	CANTDR000000000	SAMEA112228173	uncultured Lachnospiraceae bacterium
GCA_947652395.1	CANTDA000000000	SAMEA112228159	uncultured Lachnospiraceae bacterium
GCA_947650845.1	CANSWW000000000	SAMEA112228102	uncultured Lachnospiraceae bacterium
GCA_947647065.1	CANSIT000000000	SAMEA112228121	uncultured Lachnospiraceae bacterium
GCA_947650925.1	CANSXF000000000	SAMEA112228114	uncultured Lachnospiraceae bacterium
GCA_947653535.1	CANTHQ000000000	SAMEA112228180	uncultured Lachnospiraceae bacterium
GCA_947653515.1	CANTHJ000000000	SAMEA112228117	uncultured Lachnospiraceae bacterium
GCA_947653565.1	CANTHP000000000	SAMEA112228194	uncultured Lachnospiraceae bacterium
GCA_947653315.1	CANTGP000000000	SAMEA112228085	uncultured Lachnospiraceae bacterium
GCA_948465465.1	CAOJXE000000000	SAMEA112228200	uncultured Lachnospiraceae bacterium
GCA_947565925.1	CANOHW000000000	SAMEA112228064	uncultured Lactobacillus sp.
GCA_947564195.1	CANOBF000000000	SAMEA112228182	uncultured Lactobacillus sp.
GCA_947647725.1	CANSLI000000000	SAMEA112228112	uncultured Lactobacillus sp.
GCA_948358325.1	CAOJCK000000000	SAMEA112228140	uncultured Muribaculaceae bacterium
GCA_947647515.1	CANSKP000000000	SAMEA112228193	uncultured Muribaculaceae bacterium
GCA_947644345.1	CANRYT000000000	SAMEA112228176	uncultured Muribaculaceae bacterium
GCA_947647785.1	CANSLQ000000000	SAMEA112228095	uncultured Muribaculaceae bacterium
GCA_947641845.1	CANRRD000000000	SAMEA112228147	uncultured Muribaculaceae bacterium
GCA_947566065.1	CANOIL000000000	SAMEA112228110	uncultured Muribaculaceae bacterium
GCA_947564865.1	CANODJ000000000	SAMEA112228115	uncultured Muribaculaceae bacterium
GCA_947564395.1	CANOCO000000000	SAMEA112228175	uncultured Muribaculaceae bacterium
GCA_947564785.1	CANODC000000000	SAMEA112228100	uncultured Muribaculaceae bacterium
GCA_947564745.1	CANODW000000000	SAMEA112228103	uncultured Muribaculaceae bacterium
GCA_947565095.1	CANODO000000000	SAMEA112228024	uncultured Mycoplasmatota bacterium
GCA_947644365.1	CANRYZ000000000	SAMEA112228181	uncultured Oscillibacter sp.
GCA_947651425.1	CANSZJ000000000	SAMEA112228201	uncultured Oscillibacter sp.
GCA_947565835.1	CANOHO000000000	SAMEA112228046	uncultured Oscillospiraceae bacterium
GCA_947566115.1	CANOIS000000000	SAMEA112228124	uncultured Peptococcaceae bacterium
GCA_947565935.1	CANOIA000000000	SAMEA112228065	uncultured Peptococcaceae bacterium
GCA_947653295.1	CANTGM000000000	SAMEA112228146	uncultured Porphyromonadaceae bacterium
GCA_947653425.1	CANTGX000000000	SAMEA112228134	uncultured Porphyromonadaceae bacterium
GCA_947567615.1	CANONM000000000	SAMEA112228166	uncultured Porphyromonadaceae bacterium
GCA_947565125.1	CANOEK000000000	SAMEA112228138	uncultured Porphyromonadaceae bacterium
GCA_947566045.1	CANOII000000000	SAMEA112228109	uncultured Porphyromonadaceae bacterium
GCA_947564475.1	CANODE000000000	SAMEA112228101	uncultured Porphyromonadaceae bacterium
GCA_947566025.1	CANOIH000000000	SAMEA112228090	uncultured Porphyromonadaceae bacterium
GCA_947564275.1	CANOBM000000000	SAMEA112228082	uncultured Porphyromonadaceae bacterium
GCA_947566055.1	CANOIN000000000	SAMEA112228104	uncultured Porphyromonadaceae bacterium
GCA_947566105.1	CANOIQ000000000	SAMEA112228127	uncultured Porphyromonadaceae bacterium
GCA_947647775.1	CANSLO000000000	SAMEA112228152	uncultured Porphyromonadaceae bacterium
GCA_947647245.1	CANSJS000000000	SAMEA112228091	uncultured Porphyromonadaceae bacterium
GCA_948356235.1	CAOJCE000000000	SAMEA112228105	uncultured Porphyromonadaceae bacterium
GCA_947653265.1	CANTGK000000000	SAMEA112228155	uncultured Prevotella sp.
GCA_947565275.1	CANOFL000000000	SAMEA112228120	uncultured Prevotella sp.
GCA_947652215.1	CANTCG000000000	SAMEA112228058	uncultured Pseudoflavonifractor sp.
GCA_947565875.1	CANOHR000000000	SAMEA112228056	uncultured Pseudoflavonifractor sp.
GCA_947566095.1	CANOIO000000000	SAMEA112228156	uncultured Pseudoflavonifractor sp.
GCA_947652855.1	CANTEO000000000	SAMEA112228179	uncultured Roseburia sp.
GCA_947646535.1	CANSGY000000000	SAMEA112228071	uncultured Roseburia sp.
GCA_947652685.1	CANTEA000000000	SAMEA112228143	uncultured Roseburia sp.
GCA_947647545.1	CANSKU000000000	SAMEA112228215	uncultured Roseburia sp.
GCA_947564765.1	CANODN000000000	SAMEA112228111	uncultured Roseburia sp.
GCA_947567465.1	CANONG000000000	SAMEA112228030	uncultured Roseburia sp.
GCA_947564225.1	CANOBI000000000	SAMEA112228061	uncultured Roseburia sp.
GCA_947567315.1	CANONV000000000	SAMEA112228125	uncultured Roseburia sp.
GCA_947564465.1	CANOCV000000000	SAMEA112228136	uncultured Roseburia sp.
GCA_947566125.1	CANOIR000000000	SAMEA112228129	uncultured Ruminococcus sp.
GCA_947564995.1	CANOEQ000000000	SAMEA112228086	uncultured Streptococcus sp.
GCA_947564945.1	CANOEY000000000	SAMEA112228088	uncultured Sutterellaceae bacterium
GCA_947567505.1	CANOLS000000000	SAMEA112228132	uncultured Turicibacter sp.
GCA_947653355.1	CANTGU000000000	SAMEA112228107	uncultured bacterium
GCA_947653545.1	CANTHN000000000	SAMEA112228165	uncultured bacterium
GCA_947648035.1	CANSMN000000000	SAMEA112228045	uncultured bacterium
GCA_947652135.1	CANTCB000000000	SAMEA112228050	uncultured bacterium
GCA_947647605.1	CANSLB000000000	SAMEA112228208	uncultured bacterium
GCA_947652795.1	CANTEL000000000	SAMEA112228020	uncultured bacterium
GCA_947646855.1	CANSIB000000000	SAMEA112228081	uncultured bacterium
GCA_947647735.1	CANSLJ000000000	SAMEA112228137	uncultured bacterium
GCA_947651805.1	CANTAU000000000	SAMEA112228066	uncultured bacterium
GCA_947652775.1	CANTEJ000000000	SAMEA112228123	uncultured bacterium
GCA_947564255.1	CANOBV000000000	SAMEA112228054	uncultured bacterium
GCA_947564525.1	CANOCK000000000	SAMEA112228035	uncultured bacterium
GCA_947565325.1	CANOFQ000000000	SAMEA112228206	uncultured bacterium
GCA_947564565.1	CANODH000000000	SAMEA112228098	uncultured bacterium
GCA_947567415.1	CANOMY000000000	SAMEA112228052	uncultured bacterium
GCA_947565005.1	CANOEP000000000	SAMEA112228157	uncultured bacterium
GCA_947566275.1	CANOJE000000000	SAMEA112228162	uncultured bacterium
GCA_947564655.1	CANOCF000000000	SAMEA112228042	uncultured bacterium

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EMG produced TPA metagenomics assembly of PRJNA712972 data set (PIGA gene responsible for GPI anchor biosynthesis : knockout leads to gut microbiome dysbiosis).

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