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Genome Information for Dendropsophus ebraccatus
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The hourglass treefrog (Dendropsophus ebraccatus) name refers to its hourglass shape. The hourglass treefrog is found throughout Central America. It has plasticity in reproduction, laying eggs in water under some conditions and laying eggs on land under others. This assembly is from a trio of samples, with the parents (mother aDenEbr4 and father aDenEbr5) used to sort the haplotype reads of the child (aDenEbr1) to produce high-quality assemblies of both maternal and paternal inherited haplotypes. Justin Touchon from Vassar College collected and bred the animals, and coordinated the project. Genome sequencing and assembly was coordinated by Erich D. Jarvis and Olivier Fedrigo at the Rockefeller University Vertebrate Genome Lab, and as part of the Vertebrate Genomes Project (VGP).
| Accession | PRJNA922582 |
| Type | Umbrella project |
| Organism | Dendropsophus ebraccatus[Taxonomy ID: 150705] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Neobatrachia; Hyloidea; Hylidae; Hylinae; Dendropsophini; Dendropsophus ebraccatus |
| Submission | Registration date: 10-Jan-2023
Vertebrate Genomes Project |
| Relevance | Reference genome |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 52775 |
| WGS master | 2 |
| Transcript | 50542 |
| SRA Experiments | 30 |
| Protein Sequences | 44300 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 3 |
| Assembly | 2 |
This project encompasses the following 5 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds SRA or Trace No data links Total |
2
1
1
1
5
|
BioProject
accession | Assembly
level | Name | Title |
|---|
| PRJNA910819 | Chromosomes | Dendropsophus ebraccatus | Dendropsophus ebraccatus (hourglass treefrog) genome aDenEbr1, paternal haplotype (Vertebrate Genomes Project) | | PRJNA910818 | Scaffolds | Dendropsophus ebraccatus | Dendropsophus ebraccatus (hourglass treefrog) genome aDenEbr1, maternal haplotype (Vertebrate Genomes Project) | | PRJNA1180998 | No data links | Dendropsophus ebraccatus | Dendropsophus ebraccatus (hourglass treefrog) RefSeq BioProject (NCBI) | | PRJNA1181002 | Chromosomes | Dendropsophus ebraccatus | Dendropsophus ebraccatus (hourglass treefrog) RefSeq BioProject (NCBI) | | PRJNA1145943 | SRA or Trace | Dendropsophus ebraccatus (hourglass treefrog) transcriptome aDenEbr1 | Dendropsophus ebraccatus (hourglass treefrog) transcriptome aDenEbr1 (Vertebrate Genomes Project) |
|