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Accession: PRJNA948548 ID: 948548

transmission chain of oxazolidinone resistance genes through one health approach

to clarify the prevalence and spread of oxazolidinone resistance genes among humans, animals, and environment niches
AccessionPRJNA948548
Data TypeGenome sequencing and assembly
ScopeMultispecies
SubmissionRegistration date: 25-Mar-2023
The Second Affiliated Hospital of Zhejiang University School of Medicine, Zhejiang University
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)301
WGS master288
Genomic DNA13
Protein Sequences2788
Other datasets
BioSample289
Assembly289
Assembly details:
Assembly levelNumber of Assemblies
1
198
90
289
AssemblyLevelWGSChrsBioSampleStrainTaxonomy
GCA_031929235.1ContigJARQAU000000000
SAMN33919456
D81-2
GCA_031928785.1ScaffoldJARQAL000000000
SAMN33919465
P56-2
GCA_031928765.1ScaffoldJARQAK000000000
SAMN33919466
P63-2
GCA_031929125.1ContigJARQAS000000000
SAMN33919458
P1-2
GCA_031929065.1ContigJARQAQ000000000
SAMN33919460
P7-2
GCA_031929765.1ScaffoldJARQBJ000000000
SAMN33919441
B226-2
GCA_031926385.1ScaffoldJARPWT000000000
SAMN33918509
Y68-1
GCA_031926365.1ScaffoldJARPWR000000000
SAMN33918511
K92-2
GCA_031926305.1ScaffoldJARPWS000000000
SAMN33918510
K71-2
GCA_031926285.1ScaffoldJARPWQ000000000
SAMN33918512
D4-2
GCA_031926205.1ScaffoldJARPWO000000000
SAMN33918514
D87-2
GCA_031926185.1ScaffoldJARPWP000000000
SAMN33918513
D60-3
GCA_031926145.1ContigJARPWN000000000
SAMN33918515
D88-2
GCA_031926125.1ScaffoldJARPWJ000000000
SAMN33918519
P20-2
GCA_031926045.1ContigJARPWM000000000
SAMN33918516
D91-2
GCA_031926025.1ScaffoldJARPWL000000000
SAMN33918517
D95-3
GCA_031926005.1ContigJARPWK000000000
SAMN33918518
D96-2
GCA_031925925.1ScaffoldJARPWG000000000
SAMN33918522
P40-2
GCA_031925865.1ContigJARPWI000000000
SAMN33918520
P32-2
GCA_031925845.1ScaffoldJARPWH000000000
SAMN33918521
P33-2
GCA_031925805.1ScaffoldJARPWB000000000
SAMN33918527
P58-2
GCA_031925765.1ScaffoldJARPWE000000000
SAMN33918524
P50-2
GCA_031925785.1ScaffoldJARPWF000000000
SAMN33918523
P44-3
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P51-3
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SAMN33918526
P53-3
GCA_031925605.1ScaffoldJARPWA000000000
SAMN33918528
P59-2
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SAMN33918529
P60-3
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SAMN33918530
P71
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SAMN33918501
B834
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SAMN33918502
M44-2
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SAMN33918505
Y31-1
GCA_031926625.1ScaffoldJARPWY000000000
SAMN33918504
Y2
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SAMN33918497
B160-2
GCA_031926845.1ScaffoldJARPXE000000000
SAMN33918498
B695
GCA_031926825.1ContigJARPXD000000000
SAMN33918499
B732
GCA_031926715.1ScaffoldJARPXC000000000
SAMN33918500
B785-2
GCA_031926695.1ScaffoldJARPWZ000000000
SAMN33918503
S4
GCA_031926465.1ScaffoldJARPWV000000000
SAMN33918507
Y55
GCA_031926545.1ScaffoldJARPWU000000000
SAMN33918508
Y57
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SAMN33918506
Y47-1
GCA_031928905.1ScaffoldJARQAM000000000
SAMN33919464
P54-3
GCA_031931765.1ScaffoldJARQDZ000000000
SAMN33919373
B516
GCA_031931705.1ScaffoldJARQEA000000000
SAMN33919372
B411
GCA_031931665.1ContigJARQDX000000000
SAMN33919375
M42-2
GCA_031931605.1ScaffoldJARQDV000000000
SAMN33919377
K72-2
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SAMN33919374
B569
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SAMN33919376
K65
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SAMN33919378
P5-2
GCA_031931385.1ScaffoldJARQDT000000000
SAMN33919379
P10
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SAMN33919380
P24-2
GCA_031929785.1ScaffoldJARQBI000000000
SAMN33919442
B245-2
GCA_031929985.1ScaffoldJARQBO000000000
SAMN33919436
B3-2
GCA_031928645.1ScaffoldJARQAF000000000
SAMN33919471
P91-3
GCA_031928145.1ContigJARPZF000000000
SAMN33918445
B391-3
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SAMN33918446
Y48
GCA_031928025.1ScaffoldJARPZB000000000
SAMN33918449
D6-3
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SAMN33918447
Y67-1
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SAMN33918448
K4
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SAMN33918450
D43-3
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SAMN33918452
D92
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SAMN33918451
D57
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SAMN33918453
P5-3
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SAMN33918454
P11-2
GCA_031927865.1ContigJARPYV000000000
SAMN33918455
P13-2
GCA_031927845.1ScaffoldJARPYU000000000
SAMN33918456
P18-2
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SAMN33918457
P55-2
GCA_031927805.1ContigJARPYR000000000
SAMN33918459
P72-2
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SAMN33918458
P65-2
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SAMN33919453
K76
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SAMN33919438
B160-1
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SAMN33906865
K100
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SAMN33906862
K10-1
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SAMN33906863
K31
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SAMN33906864
K34
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SAMN33906867
D43-1
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SAMN33906868
D64
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SAMN33906833
B127
GCA_031923705.1ScaffoldJARQGB000000000
SAMN33906832
B121-1
GCA_031923665.1ScaffoldJARQFX000000000
SAMN33906836
B398-1
GCA_031923645.1ScaffoldJARQFS000000000
SAMN33906841
B717
GCA_031923625.1ScaffoldJARQFW000000000
SAMN33906837
B448
GCA_031923595.1ScaffoldJARQFU000000000
SAMN33906839
B656-2
GCA_031923585.1ScaffoldJARQFV000000000
SAMN33906838
B605
GCA_031923565.1ScaffoldJARQFT000000000
SAMN33906840
B693
GCA_031923545.1ScaffoldJARQFR000000000
SAMN33906842
B882
GCA_031923525.1ScaffoldJARQFP000000000
SAMN33906844
B1006
GCA_031923505.1ScaffoldJARQFQ000000000
SAMN33906843
B1000-1
GCA_031923485.1ScaffoldJARQFO000000000
SAMN33906845
M2
GCA_031923465.1ScaffoldJARQFN000000000
SAMN33906846
M6
GCA_031923445.1ScaffoldJARQFM000000000
SAMN33906847
M9
GCA_031923405.1ScaffoldJARQFL000000000
SAMN33906848
M20
GCA_031923415.1ScaffoldJARQFK000000000
SAMN33906849
M25
GCA_031923385.1ScaffoldJARQFJ000000000
SAMN33906850
M43-2
GCA_031923365.1ScaffoldJARQFI000000000
SAMN33906851
M56
GCA_031923345.1ScaffoldJARQFH000000000
SAMN33906852
M70
GCA_031923325.1ScaffoldJARQFG000000000
SAMN33906853
M84
GCA_031923305.1ContigJARQFF000000000
SAMN33906854
M88
GCA_031923285.1ContigJARQFE000000000
SAMN33906855
M89
GCA_031923265.1ScaffoldJARQFC000000000
SAMN33906857
S26
GCA_031923245.1ScaffoldJARQFD000000000
SAMN33906856
S2
GCA_031923225.1ScaffoldJARQFA000000000
SAMN33906859
S49
GCA_031923205.1ScaffoldJARQFB000000000
SAMN33906858
S38-1
GCA_031923185.1ScaffoldJARQEZ000000000
SAMN33906860
Y5
GCA_031923125.1ScaffoldJARQET000000000
SAMN33906866
D16-1
GCA_031923165.1ContigJARQEY000000000
SAMN33906861
K5
GCA_031922515.1ScaffoldJARQEL000000000
SAMN33906874
P14
GCA_031920665.1ScaffoldJARQEH000000000
SAMN33906878
P66-2
GCA_031920645.1ScaffoldJARQEI000000000
SAMN33906877
P42-1
GCA_031920625.1ScaffoldJARQEE000000000
SAMN33906881
P82-1
GCA_031920585.1ScaffoldJARQED000000000
SAMN33906882
P83-1
GCA_031920525.1ScaffoldJARQEG000000000
SAMN33906879
P72-1
GCA_031920505.1ScaffoldJARQEB000000000
SAMN33906884
P90-1
GCA_031920405.1ScaffoldJARQEF000000000
SAMN33906880
P79-2
GCA_031920385.1ScaffoldJARQEC000000000
SAMN33906883
P88-1
GCA_031922685.1ScaffoldJARQEP000000000
SAMN33906870
D85-1
GCA_031922665.1ContigJARQEO000000000
SAMN33906871
D95-1
GCA_031922725.1ContigJARQEN000000000
SAMN33906872
P4
GCA_031922745.1ScaffoldJARQEQ000000000
SAMN33906869
D71
GCA_031922625.1ScaffoldJARQEM000000000
SAMN33906873
P11-1
GCA_031922495.1ScaffoldJARQEJ000000000
SAMN33906876
P39
GCA_031922465.1ScaffoldJARQEK000000000
SAMN33906875
P30-1
GCA_031949785.1ScaffoldJARQFY000000000
SAMN33906835
B366
GCA_031949765.1ScaffoldJARQFZ000000000
SAMN33906834
B196-1
GCA_031924605.1ContigJARPTD000000000
SAMN33915857
P94-2
GCA_031925545.1ScaffoldJARPUK000000000
SAMN33915824
B133
GCA_031925525.1ContigJARPUL000000000
SAMN33915823
B129
GCA_031925505.1ContigJARPUM000000000
SAMN33915822
B38
GCA_031925485.1ContigJARPUJ000000000
SAMN33915825
B162-2
GCA_031925465.1ScaffoldJARPUE000000000
SAMN33915830
B389
GCA_031925445.1ContigJARPUI000000000
SAMN33915826
B244
GCA_031925425.1ContigJARPUH000000000
SAMN33915827
B248
GCA_031925405.1ContigJARPUF000000000
SAMN33915829
B361-2
GCA_031925385.1ContigJARPUG000000000
SAMN33915828
B252-1
GCA_031925365.1ContigJARPUD000000000
SAMN33915831
B555-1
GCA_031925345.1ScaffoldJARPUB000000000
SAMN33915833
B686
GCA_031925315.1ContigJARPUC000000000
SAMN33915832
B627
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SAMN33915834
B749
GCA_031925285.1ContigJARPTZ000000000
SAMN33915835
B778-2
GCA_031925265.1ScaffoldJARPTY000000000
SAMN33915836
B1009
GCA_031925245.1ScaffoldJARPTX000000000
SAMN33915837
B1010-2
GCA_031925225.1ContigJARPTW000000000
SAMN33915838
M10
GCA_031925205.1ContigJARPTU000000000
SAMN33915840
S10
GCA_031925185.1ContigJARPTV000000000
SAMN33915839
M79
GCA_031925165.1ContigJARPTT000000000
SAMN33915841
S34-2
GCA_031925145.1ScaffoldJARPTS000000000
SAMN33915842
S39-2
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SAMN33915845
S45-1
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SAMN33915846
S45-2
GCA_031925085.1ContigJARPTR000000000
SAMN33915843
S40-2
GCA_031925045.1ContigJARPTQ000000000
SAMN33915844
S43
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SAMN33915847
Y69-1
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SAMN33915853
P37-3
GCA_031924945.1ContigJARPTM000000000
SAMN33915848
K62
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SAMN33915854
P54-1
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SAMN33915855
P90-2
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SAMN33915849
D62-2
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SAMN33915850
D81-1
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SAMN33915856
P93-2
GCA_031924695.1ScaffoldJARPTI000000000
SAMN33915852
P37-2
GCA_031924685.1ContigJARPTJ000000000
SAMN33915851
P22-2
GCA_031928305.1ScaffoldJARPZL000000000
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D95-2
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B471-1
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B858-1
GCA_031928525.1ScaffoldJARPZS000000000
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B226-1
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M66
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D43-2
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SAMN33918436
K60-2
GCA_031928385.1ScaffoldJARPZK000000000
SAMN33918440
P44-2
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K69-2
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P54-2
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P89-2
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SAMN33918460
B276
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B510
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B369
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SAMN33918463
B511
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S38-2
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K91
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SAMN33918469
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D6-4
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SAMN33918472
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B178-2
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B196-2
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M26
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SAMN33918495
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SAMN33919392
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Y39
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Y13
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Y19
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Y36
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SAMN33919388
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SAMN33919389
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SAMN33919403
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SAMN33919400
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SAMN33919396
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SAMN33919397
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SAMN33919398
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SAMN33919399
Y50
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SAMN33919401
Y54
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SAMN33919402
Y56
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SAMN33919404
Y61
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SAMN33919405
Y63
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SAMN33919406
Y64
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SAMN33919407
Y65
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SAMN33919408
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SAMN33919411
Y74-2
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SAMN33919410
Y73
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SAMN33919409
Y71-2
GCA_031930345.1ScaffoldJARQCM000000000
SAMN33919412
Y75
GCA_031927185.1ContigJARPXP000000000
SAMN33918487
P96-2
GCA_031927505.1ContigJARPYD000000000
SAMN33918473
S9
GCA_031927465.1ScaffoldJARPYA000000000
SAMN33918476
Y8-2
GCA_031927445.1ContigJARPYB000000000
SAMN33918475
Y4
GCA_031927425.1ContigJARPXY000000000
SAMN33918478
Y22-2
GCA_031927405.1ContigJARPXZ000000000
SAMN33918477
Y20
GCA_031927385.1ContigJARPXX000000000
SAMN33918479
Y31-2
GCA_031927365.1ContigJARPXW000000000
SAMN33918480
Y35-2
GCA_031927345.1ContigJARPXV000000000
SAMN33918481
Y53-2
GCA_031927325.1ContigJARPXU000000000
SAMN33918482
Y60-2
GCA_031927305.1ContigJARPXT000000000
SAMN33918483
Y68-2
GCA_031927285.1ScaffoldJARPXS000000000
SAMN33918484
Y70
GCA_031927265.1ScaffoldJARPXR000000000
SAMN33918485
P86-2
GCA_031927245.1ContigJARPXQ000000000
SAMN33918486
P91-4
GCA_031927525.1ContigJARPYC000000000
SAMN33918474
Y3
GCA_031929505.1ScaffoldJARQBC000000000
SAMN33919448
Y9
GCA_031929465.1ScaffoldJARQBA000000000
SAMN33919450
Y28
GCA_031928625.1ContigJARQAG000000000
SAMN33919470
P82-2
GCA_031929225.1ScaffoldJARQAT000000000
SAMN33919457
D84-2
GCA_031930065.1ScaffoldJARQCA000000000
SAMN33919424
P87-2
GCA_031930205.1ScaffoldJARQCF000000000
SAMN33919419
P75-3
GCA_031930185.1ScaffoldJARQCE000000000
SAMN33919420
P76-2
GCA_031930165.1ScaffoldJARQCB000000000
SAMN33919423
P84-2
GCA_031930145.1ContigJARQCD000000000
SAMN33919421
P78-3
GCA_031930125.1ScaffoldJARQCC000000000
SAMN33919422
P81-3
GCA_031930045.1ScaffoldJARQBZ000000000
SAMN33919425
P96-3
GCA_045277275.1ChromosomeSAMN33919552
K66-2
GCA_031929445.1ScaffoldJARQBB000000000
SAMN33919449
Y18
GCA_031929365.1ScaffoldJARQAY000000000
SAMN33919452
Y69-2
GCA_031930005.1ScaffoldJARQBU000000000
SAMN33919430
D95-4
GCA_031929965.1ScaffoldJARQBV000000000
SAMN33919429
D90
GCA_031929945.1ScaffoldJARQBS000000000
SAMN33919432
P27-3
GCA_031929925.1ScaffoldJARQBT000000000
SAMN33919431
D97-2
GCA_031929905.1ScaffoldJARQBQ000000000
SAMN33919434
P64-3
GCA_031929885.1ScaffoldJARQBR000000000
SAMN33919433
P49-3
GCA_031929865.1ScaffoldJARQBP000000000
SAMN33919435
P73-3
GCA_031930025.1ScaffoldJARQBX000000000
SAMN33919427
D69-2
GCA_031930105.1ScaffoldJARQBW000000000
SAMN33919428
D80-2
GCA_031930075.1ScaffoldJARQBY000000000
SAMN33919426
D16-3

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