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This project collects the sequencing data and assemblies generated for Magallana gigas, common name Pacific oyster, by the Darwin Tree of Life Project (https://www.darwintreeoflife.org/). The data under this project are made available subject to the Darwin Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/).
| Accession | PRJEB61921 |
| Type | Umbrella project |
| Organism | Magallana gigas[Taxonomy ID: 29159] Eukaryota; Metazoa; Spiralia; Lophotrochozoa; Mollusca; Bivalvia; Autobranchia; Pteriomorphia; Ostreida; Ostreoidea; Ostreidae; Magallana; Magallana gigas |
| Submission | Registration date: 9-May-2023
WELLCOME SANGER INSTITUTE |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 60312 |
| WGS master | 2 |
| Genomic DNA | 11 |
| Transcript | 60260 |
| SRA Experiments | 8 |
| Protein Sequences | 51045 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 5 |
| Assembly | 2 |
xbMagGiga encompasses the following 4 sub-projects:
| Project Type | Number of Projects |
Genome sequencingHighest level of assembly : Chromosomes Scaffolds Total |
2
1
3
|
BioProject
accession | Assembly
level | Organism | Title |
|---|
| PRJEB70993 | Chromosomes | Magallana gigas | Magallana gigas (Pacific oyster) genome assembly, xbMagGiga1 (WELLCOME SANGER INSTITUTE) | | PRJEB70992 | Scaffolds | Magallana gigas | Magallana gigas (Pacific oyster) genome assembly, xbMagGiga1, alternate haplotype (WELLCOME SANGER INSTITUTE) | | PRJNA1118722 | Chromosomes | Magallana gigas | Magallana gigas (Pacific oyster) genome assembly, xbMagGiga1 RefSeq Genome (NCBI) |
|
| Other | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJEB61920 | Magallana gigas | Magallana gigas (Pacific oyster), genomic and transcriptomic data (WELLCOME SANGER INSTITUTE) |
|