ID 991976 - BioProject

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Accession: PRJNA991976 ID: 991976

Genome sequencing of miscellaneous Xanthomonas from WHRI collection

Genome sequencing of interesting strains from the WHRI collection.

Accession	PRJNA991976
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Michalopoulou VA et al., "Draft Genome Sequences of Pathotype Strains for Three Pathovars Belonging to Three Xanthomonas Species.", Microbiol Resour Announc, 2018 Sep;7(12)
Grants	"Xanthomonas plant diseases: mitigating existing, emerging and future threats to UK agriculture" (Grant ID BB/T010916/1, UK Research and Innovation)
Submission	Registration date: 6-Jul-2023 The Xanthomonas Threats project - University of Exeter
Related Resources	University of Warwick Crop Centre at Wellesbourne
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	113
WGS master	56
Genomic DNA	57
SRA Experiments	146
Protein Sequences	97859
Publications
PubMed	1
PMC	1
Other datasets
BioSample	82
Assembly	76

Assembly details:

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Assembly level

Number of Assemblies

22
48
6
76

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_040203135.1	JBEGFG000000000		SAMN40354562	WHRI 7004	Xanthomonas arboricola
GCA_040201855.2		2	SAMN40354550	WHRI 5692A	Xanthomonas arboricola pv. juglandis
GCA_040201965.2		1	SAMN40354551	WHRI 5708	Xanthomonas arboricola
GCA_040202855.1	JBEGEC000000000		SAMN40354539	WHRI 10264	Xanthomonas citri pv. citri
GCA_040202075.1	JBEGEF000000000		SAMN40354530	WHRI 5232	Xanthomonas citri pv. malvacearum
GCA_040202415.2		4	SAMN40354557	WHRI 6104	Xanthomonas citri
GCA_040202935.2		3	SAMN40354537	WHRI 10262	Xanthomonas citri pv. malvacearum
GCA_040202995.2		2	SAMN40354536	WHRI 10261	Xanthomonas citri pv. fuscans
GCA_040202945.2		3	SAMN40354538	WHRI 10263	Xanthomonas citri pv. fuscans
GCA_040202455.2		1	SAMN40354553	WHRI 5755	Xanthomonas dyei
GCA_040203125.2		1	SAMN40354561	WHRI 64A	Xanthomonas dyei
GCA_040202735.2		3	SAMN40354506	WHRI 8301	Xanthomonas euvesicatoria
GCA_040202055.1	JBEGEN000000000		SAMN40354531	WHRI 5642	Xanthomonas hortorum pv. pelargonii
GCA_040201995.1	JBEGEI000000000		SAMN40354543	WHRI 5616	Xanthomonas hortorum pv. pelargonii
GCA_040201975.1	JBEGEL000000000		SAMN40354546	WHRI 5639	Xanthomonas hortorum pv. pelargonii
GCA_040201985.1	JBEGER000000000		SAMN40354549	WHRI 5689A	Xanthomonas hortorum
GCA_040201955.1	JBEGES000000000		SAMN39911788	WHRI 5690	Xanthomonas hortorum pv. hederae
GCA_040201895.1	JBEGEO000000000		SAMN40354532	WHRI 5644	Xanthomonas hortorum pv. pelargonii
GCA_040201905.1	JBEGEV000000000		SAMN40354552	WHRI 5726	Xanthomonas hortorum pv. pelargonii
GCA_040201875.1	JBEGEQ000000000		SAMN40354548	WHRI 5649	Xanthomonas hortorum pv. pelargonii
GCA_040201865.1	JBEGEJ000000000		SAMN40354544	WHRI 5635	Xanthomonas hortorum pv. pelargonii
GCA_040202365.1	JBEGEZ000000000		SAMN40354555	WHRI 6029A	Xanthomonas hortorum
GCA_040202315.1	JBEGFS000000000		SAMN39911795	WHRI 7726B	Xanthomonas hortorum pv. hederae
GCA_040202295.1	JBEGFT000000000		SAMN39911796	WHRI 7730E	Xanthomonas hortorum pv. hederae
GCA_040202265.1	JBEGFV000000000		SAMN39911798	WHRI 7732A	Xanthomonas hortorum pv. hederae
GCA_040202255.1	JBEGFU000000000		SAMN39911797	WHRI 7731A	Xanthomonas hortorum pv. hederae
GCA_040202235.1	JBEGFY000000000		SAMN39911801	WHRI 7735A	Xanthomonas hortorum pv. hederae
GCA_040202205.1	JBEGFZ000000000		SAMN39911802	WHRI 7736B	Xanthomonas hortorum pv. hederae
GCA_040202185.1	JBEGGA000000000		SAMN39911803	WHRI 7738B	Xanthomonas hortorum pv. hederae
GCA_040202065.1	JBEGEM000000000		SAMN40354547	WHRI 5641	Xanthomonas hortorum pv. pelargonii
GCA_040202095.1	JBEGEK000000000		SAMN40354545	WHRI 5636	Xanthomonas hortorum pv. pelargonii
GCA_040202805.1	JBEGEE000000000		SAMN40354540	WHRI 3810A	Xanthomonas hortorum
GCA_040202825.1	JBEGGB000000000		SAMN40354565	WHRI 7742	Xanthomonas hortorum
GCA_040202755.1	JBEGGE000000000		SAMN39911786	WHRI 8090	Xanthomonas hortorum pv. hederae
GCA_040202765.1	JBEGGF000000000		SAMN39911787	WHRI 8097	Xanthomonas hortorum pv. hederae
GCA_040202655.1	JBEGFQ000000000		SAMN39911793	WHRI 7722	Xanthomonas hortorum pv. hederae
GCA_040202665.1	JBEGFH000000000		SAMN39911790	WHRI 7053B	Xanthomonas hortorum pv. hederae
GCA_040202695.1	JBEGGD000000000		SAMN39911805	WHRI 7747	Xanthomonas hortorum pv. hederae
GCA_040203165.1	JBEGFK000000000		SAMN39911785	WHRI 7185	Xanthomonas hortorum pv. hederae
GCA_040203095.1	JBEGFP000000000		SAMN39911792	WHRI 7720	Xanthomonas hortorum pv. hederae
GCA_040203075.1	JBEGFE000000000		SAMN40354560	WHRI 6229A	Xanthomonas hortorum
GCA_040203035.1	JBEGFL000000000		SAMN39911807	WHRI 7204	Xanthomonas hortorum pv. hederae
GCA_040203025.1	JBEGFM000000000		SAMN39911806	WHRI 7219	Xanthomonas hortorum pv. hederae
GCA_040202595.1	JBEGGC000000000		SAMN39911804	WHRI 7743	Xanthomonas hortorum pv. hederae
GCA_040202515.1	JBEGEX000000000		SAMN39911783	WHRI 5889	Xanthomonas hortorum pv. hederae
GCA_040202465.1	JBEGEY000000000		SAMN39911784	WHRI 5993	Xanthomonas hortorum pv. hederae
GCA_040201775.1	JBEGEP000000000		SAMN40354533	WHRI 5648	Xanthomonas hortorum pv. pelargonii
GCA_040203145.2		4	SAMN39911791	WHRI 7714	Xanthomonas hortorum pv. hederae
GCA_040202155.2		5	SAMN39911800	WHRI 7734A	Xanthomonas hortorum pv. hederae
GCA_040202555.2		4	SAMN39911799	WHRI 7733A	Xanthomonas hortorum pv. hederae
GCA_040202325.2		4	SAMN39911794	WHRI 7724B	Xanthomonas hortorum pv. hederae
GCA_040202175.2		4	SAMN39911782	WHRI 7717B	Xanthomonas hortorum pv. hederae
GCA_040202635.2		2	SAMN40354556	WHRI 6092A	Xanthomonas hortorum pv. vitians
GCA_035012745.1	JAYGQL000000000		SAMN36321432	WHRI 10051B	Xanthomonas nasturtii
GCA_035012705.1	JAYGQM000000000		SAMN36321433	WHRI 10052	Xanthomonas nasturtii
GCA_040202795.2		1	SAMN40354541	WHRI 5233	Xanthomonas oryzae pv. oryzae
GCA_040202085.2		2	SAMN40354542	WHRI 5234	Xanthomonas oryzae pv. oryzicola
GCA_040202535.2		3	SAMN40354535	WHRI 8957	Xanthomonas perforans
GCA_035012725.1	JAYGQN000000000		SAMN36329570	WHRI 10064A	Xanthomonas sp. WHRI 10064A
GCA_035012805.1	JAYGQO000000000		SAMN36329571	WHRI 10064B	Xanthomonas sp. WHRI 10064B
GCA_040202985.1	JBEGDV000000000		SAMN40300950	WHRI 10200	Xanthomonas sp. WHRI 10200
GCA_040202875.1	JBEGDW000000000		SAMN40300951	WHRI 10204	Xanthomonas sp. WHRI 10204
GCA_040202975.1	JBEGDX000000000		SAMN40300953	WHRI 10207	Xanthomonas sp. WHRI 10207
GCA_040202905.1	JBEGDY000000000		SAMN40300952	WHRI 10208	Xanthomonas sp. WHRI 10208
GCA_040202885.1	JBEGED000000000		SAMN40300954	WHRI 1810A	Xanthomonas sp. WHRI 1810A
GCA_040202405.1	JBEGFC000000000		SAMN40354558	WHRI 6106	Xanthomonas sp. WHRI 6106
GCA_040202385.2		1	SAMN40354559	WHRI 6108	Xanthomonas sp. WHRI 6108
GCA_040202355.2		1	SAMN40354563	WHRI 7064	Xanthomonas sp. WHRI 7064
GCA_040203115.2		1	SAMN40354564	WHRI 7065	Xanthomonas sp. WHRI 7065
GCA_040202675.1	JBEGGI000000000		SAMN40354567	WHRI 8356	Xanthomonas sp. WHRI 8356
GCA_040202615.1	JBEGGJ000000000		SAMN40354568	WHRI 8370	Xanthomonas sp. WHRI 8370
GCA_040202495.1	JBEGGK000000000		SAMN40354569	WHRI 8391	Xanthomonas sp. WHRI 8391
GCA_040203315.1	JBEGGL000000000		SAMN40354570	WHRI 8393	Xanthomonas sp. WHRI 8393
GCA_035012685.2	JAYGQP000000000		SAMN36329572	WHRI 8812E	Xanthomonas sp. WHRI 8812E
GCA_035012785.1	JAYGQQ000000000		SAMN36329573	WHRI 8932A	Xanthomonas sp. WHRI 8932A
GCA_040202575.2		2	SAMN40354507	WHRI 8302	Xanthomonas vesicatoria

SRA Data Details

Parameter	Value
Data volume, Gbases	142
Data volume, Mbytes	81719

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Genome sequencing of miscellaneous Xanthomonas from WHRI collection

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