Gut Prophage Induction (ID 1014687) - BioProject

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Accession: PRJEB64565 ID: 1014687

Gut Prophage Induction

Induction of prohages from gut isolates

Induction of 125 active gut prophages in seven induction conditions

Accession	PRJEB64565
Data Type	Genome sequencing
Scope	Monoisolate
Submission	Registration date: 9-Sep-2023 MONASH INSTITUTE OF MEDICAL RESEARCH - MONASH UNIVERSITY

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9539
WGS master	155
Genomic DNA	134
SRA Experiments	733
Protein Sequences	7359
Other datasets
BioSample	865
Assembly	162

Assembly details:

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Assembly level

Number of Assemblies

8
1
139
14
162

Assembly	WGS	Chrs	BioSample	Taxonomy
GCA_964260545.1	CAXVNM000000000		SAMEA114263511	Actinobacillus succinogenes
GCA_964260405.1	CAXVMB000000000		SAMEA114263508	Actinobacillus succinogenes
GCA_964260005.1	CAXVLV000000000		SAMEA114263504	Bacteroides caccae CL03T12C61
GCA_964259275.1	CAXVKC000000000		SAMEA114263576	Bacteroides caccae CL03T12C61
GCA_964260085.1	CAXVNF000000000		SAMEA114263472	Bacteroides caccae CL03T12C61
GCA_964260115.1	CAXVMI000000000		SAMEA114263480	Bacteroides caccae CL03T12C61
GCA_964260355.1	CAXVNY000000000		SAMEA114263469	Bacteroides caccae CL03T12C61
GCA_964260515.1	CAXVNT000000000		SAMEA114263481	Bacteroides caccae CL03T12C61
GCA_964260225.1	CAXVNJ000000000		SAMEA114263586	Bacteroides caccae CL03T12C61
GCA_964260465.1	CAXVNI000000000		SAMEA114263507	Bacteroides caccae CL03T12C61
GCA_964260345.1	CAXVMV000000000		SAMEA114263505	Bacteroides caccae CL03T12C61
GCA_964260065.1	CAXVNV000000000		SAMEA114263470	Bacteroides caccae CL03T12C61
GCA_964259985.1	CAXVMJ000000000		SAMEA114263463	Bacteroides caccae CL03T12C61
GCA_964259865.1	CAXVLK000000000		SAMEA114263493	Bacteroides caccae CL03T12C61
GCA_964260295.1	CAXVMS000000000		SAMEA114263512	Bacteroides caccae CL03T12C61
GCA_964260445.1	CAXVNN000000000		SAMEA114263445	Bacteroides caccae CL03T12C61
GCA_964260435.1	CAXVNK000000000		SAMEA114263509	Bacteroides caccae CL03T12C61
GCA_964259085.1	CAXVJO000000000		SAMEA114263522	Bacteroides caccae CL03T12C61
GCA_964260035.1	CAXVLW000000000		SAMEA114263510	Bacteroides caccae CL03T12C61
GCA_964260275.1	CAXVMM000000000		SAMEA114263494	Bacteroides caccae CL03T12C61
GCA_964259765.1	CAXVLS000000000		SAMEA114263475	Bacteroides caccae CL03T12C61
GCA_964260135.1	CAXVNG000000000		SAMEA114263464	Bacteroides caccae CL03T12C61
GCA_964260015.1	CAXVNO000000000		SAMEA114263479	Bacteroides caccae CL03T12C61
GCA_964260145.1	CAXVNA000000000		SAMEA114263471	Bacteroides caccae CL03T12C61
GCA_964259785.1	CAXVLQ000000000		SAMEA114263476	Bacteroides caccae CL03T12C61
GCA_964260325.1	CAXVNR000000000		SAMEA114263477	Bacteroides eggerthii DSM 20697
GCA_964260455.1	CAXVNL000000000		SAMEA114263482	Bacteroides faecis MAJ27
GCA_964259835.1	CAXVLO000000000		SAMEA114263485	Bacteroides faecis MAJ27
GCA_964259775.1	CAXVLY000000000		SAMEA114263489	Bacteroides faecis MAJ27
GCA_964260305.1	CAXVMY000000000		SAMEA114263506	Bacteroides fragilis
GCA_964260095.1	CAXVNB000000000		SAMEA114263502	Bacteroides fragilis
GCA_964260215.1	CAXVMK000000000		SAMEA114263478	Bacteroides ovatus CL02T12C04
GCA_964260505.1	CAXVOC000000000		SAMEA114263441	Bacteroides stercoris
GCA_964260175.1	CAXVMH000000000		SAMEA114263436	Bacteroides stercoris
GCA_964260055.1	CAXVMA000000000		SAMEA114263456	Bacteroides stercoris
GCA_964260195.1	CAXVMO000000000		SAMEA114263435	Bacteroides stercoris
GCA_964259965.1	CAXVLN000000000		SAMEA114263442	Bacteroides stercoris
GCA_964259745.1	CAXVLE000000000		SAMEA114263451	Bacteroides stercoris
GCA_964260045.1	CAXVMF000000000		SAMEA114263449	Bacteroides stercoris
GCA_964260155.1	CAXVMG000000000		SAMEA114263443	Bacteroides stercoris
GCA_964259755.1	CAXVLL000000000		SAMEA114263587	Bacteroides stercoris
GCA_964260475.1	CAXVNS000000000		SAMEA114263457	Bacteroides stercoris
GCA_964260365.1	CAXVNQ000000000		SAMEA114263454	Bacteroides stercoris
GCA_964260245.1	CAXVMW000000000		SAMEA114263458	Bacteroides stercoris
GCA_964260125.1	CAXVMD000000000		SAMEA114263446	Bacteroides stercoris
GCA_964260495.1	CAXVOD000000000		SAMEA114263450	Bacteroides stercoris
GCA_964260385.1	CAXVND000000000		SAMEA114263459	Bacteroides stercoris
GCA_964264605.1		1	SAMEA9956712	Bacteroides thetaiotaomicron
GCA_964259805.1	CAXVLI000000000		SAMEA114263439	Bacteroides thetaiotaomicron
GCA_964260165.1	CAXVME000000000		SAMEA114263513	Bacteroides thetaiotaomicron
GCA_964260335.1	CAXVMP000000000		SAMEA114263438	Bacteroides thetaiotaomicron
GCA_964259515.1	CAXVKF000000000		SAMEA114263545	Bacteroides uniformis
GCA_964259285.1	CAXVJK000000000		SAMEA114263529	Bacteroides uniformis
GCA_964260535.1	CAXVOB000000000		SAMEA114263488	Bacteroides xylanisolvens SD CC 1b
GCA_964259325.1	CAXVIL000000000		SAMEA114263568	Bifidobacterium adolescentis
GCA_964259205.1	CAXVII000000000		SAMEA114263537	Bifidobacterium adolescentis ATCC 15703
GCA_964259045.1	CAXVIG000000000		SAMEA114263541	Bifidobacterium adolescentis ATCC 15703
GCA_964259685.1	CAXVKK000000000		SAMEA114263582	Bifidobacterium adolescentis
GCA_964259315.1	CAXVIH000000000		SAMEA114263566	Bifidobacterium adolescentis ATCC 15703
GCA_964260485.1	CAXVNC000000000		SAMEA114263474	Bifidobacterium adolescentis ATCC 15703
GCA_964259155.1	CAXVIK000000000		SAMEA114263553	Bifidobacterium adolescentis ATCC 15703
GCA_964259035.1	CAXVIM000000000		SAMEA114263530	Bifidobacterium adolescentis ATCC 15703
GCA_964259125.1	CAXVIF000000000		SAMEA114263562	Bifidobacterium adolescentis ATCC 15703
GCA_964259595.1	CAXVJJ000000000		SAMEA114263535	Bifidobacterium adolescentis ATCC 15703
GCA_964259105.1	CAXVIJ000000000		SAMEA114263523	Bifidobacterium adolescentis
GCA_964259065.1	CAXVIV000000000		SAMEA114263558	Bifidobacterium adolescentis ATCC 15703
GCA_964259545.1	CAXVJB000000000		SAMEA114263552	Bifidobacterium adolescentis ATCC 15703
GCA_964259255.1	CAXVIN000000000		SAMEA114263551	Bifidobacterium adolescentis ATCC 15703
GCA_964259645.1	CAXVKA000000000		SAMEA114263543	Bifidobacterium adolescentis
GCA_964259525.1	CAXVJU000000000		SAMEA114263524	Bifidobacterium adolescentis
GCA_964259405.1	CAXVIT000000000		SAMEA114263574	Bifidobacterium adolescentis ATCC 15703
GCA_964259265.1	CAXVIQ000000000		SAMEA114263538	Bifidobacterium adolescentis ATCC 15703
GCA_964259655.1	CAXVKE000000000		SAMEA114263542	Bifidobacterium adolescentis ATCC 15703
GCA_964260425.1	CAXVLZ000000000		SAMEA114263473	Bifidobacterium adolescentis ATCC 15703
GCA_964259415.1	CAXVJA000000000		SAMEA114263514	Bifidobacterium adolescentis ATCC 15703
GCA_964259935.1	CAXVLB000000000		SAMEA114263448	Bifidobacterium longum
GCA_964260025.1	CAXVLG000000000		SAMEA114263452	Bifidobacterium longum
GCA_964259885.1	CAXVLC000000000		SAMEA114263447	Bifidobacterium longum
GCA_964259975.1	CAXVLD000000000		SAMEA114263460	Bifidobacterium longum
GCA_964259215.1	CAXVIY000000000		SAMEA114263549	Bifidobacterium longum
GCA_964260105.1	CAXVLX000000000		SAMEA114263453	Bifidobacterium longum
GCA_964259695.1	CAXVKS000000000		SAMEA114263533	Bifidobacterium longum subsp. longum KACC 91563
GCA_964259635.1	CAXVKM000000000		SAMEA114263584	Bifidobacterium longum subsp. longum JCM 1217
GCA_964259795.1	CAXVMZ000000000		SAMEA114263589	Bifidobacterium longum
GCA_964259675.1	CAXVKO000000000		SAMEA114263554	Bifidobacterium longum
GCA_964259395.1	CAXVIR000000000		SAMEA114263563	Bifidobacterium longum subsp. longum KACC 91563
GCA_964260235.1	CAXVMC000000000		SAMEA114263455	Bifidobacterium longum
GCA_964259535.2		1	SAMEA114263556	Bifidobacterium longum
GCA_964259555.2		1	SAMEA114263544	Bifidobacterium longum subsp. longum KACC 91563
GCA_964259295.2	CAXVJP000000000		SAMEA114263525	Blautia obeum
GCA_964259115.1	CAXVKQ000000000		SAMEA114263567	Catenibacterium mitsuokai DSM 15897
GCA_964259175.1	CAXVKJ000000000		SAMEA114263580	Catenibacterium mitsuokai DSM 15897
GCA_964259225.1	CAXVKN000000000		SAMEA114263579	Catenibacterium mitsuokai DSM 15897
GCA_964259495.1	CAXVKV000000000		SAMEA114263526	Catenibacterium mitsuokai
GCA_964259615.1	CAXVKT000000000		SAMEA114263571	Clostridium perfringens
GCA_964259235.1	CAXVKH000000000		SAMEA114263581	Clostridium perfringens SM101
GCA_964259245.1	CAXVJE000000000		SAMEA114263578	Clostridium perfringens SM101
GCA_964259505.1	CAXVKG000000000		SAMEA114263515	Clostridium perfringens
GCA_964259565.1	CAXVKL000000000		SAMEA114263536	Clostridium perfringens
GCA_964259665.1	CAXVKR000000000		SAMEA114263570	Clostridium perfringens CPE str. F4969
GCA_964259145.1	CAXVIX000000000		SAMEA114263531	Clostridium perfringens CPE str. F4969
GCA_964259015.1	CAXVJD000000000		SAMEA114263520	Clostridium perfringens SM101
GCA_964259135.1	CAXVIW000000000		SAMEA114263550	Collinsella aerofaciens ATCC 25986
GCA_964259375.1	CAXVJM000000000		SAMEA114263575	Collinsella aerofaciens ATCC 25986
GCA_964259385.1	CAXVIS000000000		SAMEA114263557	Collinsella aerofaciens ATCC 25986
GCA_964259165.1	CAXVJF000000000		SAMEA114263540	Collinsella aerofaciens ATCC 25986
GCA_964259715.1	CAXVKU000000000		SAMEA114263534	Collinsella aerofaciens ATCC 25986
GCA_964259075.1	CAXVIP000000000		SAMEA114263532	Collinsella aerofaciens ATCC 25986
GCA_964259355.1	CAXVJQ000000000		SAMEA114263539	Collinsella aerofaciens ATCC 25986
GCA_964259575.1	CAXVJG000000000		SAMEA114263546	Collinsella aerofaciens ATCC 25986
GCA_964259425.1	CAXVIZ000000000		SAMEA114263555	Collinsella bouchesdurhonensis
GCA_964259195.1	CAXVIO000000000		SAMEA114263565	Dorea longicatena
GCA_964259095.1	CAXVJL000000000		SAMEA114263569	Enterococcus faecalis
GCA_964259025.1	CAXVKB000000000		SAMEA114263521	Enterococcus faecalis
GCA_964259625.1	CAXVKW000000000		SAMEA114263573	Enterococcus faecalis
GCA_964259485.1	CAXVJY000000000		SAMEA114263547	Enterococcus faecalis
GCA_964259455.1	CAXVJW000000000		SAMEA114263548	Enterococcus faecalis
GCA_964259055.1	CAXVJT000000000		SAMEA114263518	Enterococcus faecalis
GCA_964259705.1	CAXVKX000000000		SAMEA114263527	Enterococcus faecalis
GCA_964259605.1	CAXVJZ000000000		SAMEA114263583	Enterococcus faecalis
GCA_964259465.1	CAXVJX000000000		SAMEA114263516	Enterococcus faecalis
GCA_964259445.1	CAXVKD000000000		SAMEA114263517	Enterococcus faecalis
GCA_964259435.1	CAXVKI000000000		SAMEA114263519	Enterococcus faecium UC8668
GCA_964259725.1	CAXVKY000000000		SAMEA114263572	Enterococcus faecium UC8668
GCA_964264585.1		1	SAMEA9956702	Escherichia coli
GCA_964264615.1		1	SAMEA9956715	Escherichia coli
GCA_964264575.1		1	SAMEA9956585	Escherichia coli
GCA_964264555.1		1	SAMEA9956572	Escherichia coli IS25
GCA_964264595.1		1	SAMEA9956587	Escherichia coli IS25
GCA_964260525.1	CAXVNU000000000		SAMEA114263500	Escherichia coli IS25
GCA_964259845.1	CAXVLH000000000		SAMEA114263588	Escherichia coli IS25
GCA_964259855.1	CAXVLR000000000		SAMEA114263486	Escherichia coli
GCA_964260185.1	CAXVLU000000000		SAMEA114263437	Escherichia coli IS25
GCA_964259875.1	CAXVLT000000000		SAMEA114263497	Escherichia coli IS25
GCA_964259915.1	CAXVLM000000000		SAMEA114263487	Escherichia coli
GCA_964260555.1	CAXVNW000000000		SAMEA114263490	Escherichia coli IS25
GCA_964260285.1	CAXVMR000000000		SAMEA114263496	Escherichia coli IS25
GCA_964260255.1	CAXVMN000000000		SAMEA114263492	Escherichia coli IS25
GCA_964260265.1	CAXVMT000000000		SAMEA114263503	Escherichia coli IS25
GCA_964259925.1	CAXVML000000000		SAMEA114263495	Escherichia coli IS25
GCA_964260315.1	CAXVNE000000000		SAMEA114263483	Escherichia coli
GCA_964259335.1	CAXVKP000000000		SAMEA114263577	Faecalicatena contorta
GCA_964259905.1	CAXVMX000000000		SAMEA114263484	Fusobacterium varium
GCA_964259475.1	CAXVJC000000000		SAMEA114263585	Lactococcus garvieae
GCA_964259945.1	CAXVLJ000000000		SAMEA114263499	Parabacteroides distasonis
GCA_964259345.1	CAXVJR000000000		SAMEA114263560	Paraclostridium bifermentans
GCA_964259185.1	CAXVJV000000000		SAMEA114263561	Paraclostridium bifermentans
GCA_964259585.1	CAXVJI000000000		SAMEA114263564	Parafannyhessea umbonata
GCA_964259365.1	CAXVIU000000000		SAMEA114263559	Parafannyhessea umbonata
GCA_964259825.1	CAXVKZ000000000		SAMEA114263468	Parafannyhessea umbonata
GCA_964264565.1		1	SAMEA9956764	Phocaeicola dorei
GCA_964259955.1	CAXVLF000000000		SAMEA114263498	Phocaeicola plebeius DSM 17135
GCA_964259995.1	CAXVLP000000000		SAMEA114263501	Phocaeicola plebeius DSM 17135
GCA_964260205.1	CAXVNH000000000		SAMEA114263491	Phocaeicola vulgatus ATCC 8482
GCA_964260395.1	CAXVNX000000000		SAMEA114263465	Phocaeicola vulgatus
GCA_964260075.1	CAXVNP000000000		SAMEA114263467	Phocaeicola vulgatus
GCA_964260415.1	CAXVNZ000000000		SAMEA114263461	Phocaeicola vulgatus
GCA_964259895.1	CAXVMU000000000		SAMEA114263444	Phocaeicola vulgatus
GCA_964259815.1	CAXVMQ000000000		SAMEA114263462	Phocaeicola vulgatus
GCA_964260375.1	CAXVOA000000000		SAMEA114263466	Phocaeicola vulgatus
GCA_964259305.1	CAXVJN000000000		SAMEA114263528	Thomasclavelia spiroformis
GCA_964259735.1	CAXVLA000000000		SAMEA114263440	[Ruminococcus] torques

SRA Data Details

Parameter	Value
Data volume, Gbases	1,318
Data volume, Tbytes	0.49

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Gut Prophage Induction

Induction of prohages from gut isolates

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