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Accession: PRJNA227458 ID: 227458

Salmonella enterica

GenomeTrakr real-time SE: NY State Dept. of Health, Wadsworth Center

See Genome Information for Salmonella enterica
Surveillance of Salmonella Enteritidis using SNP based phylogenetic analysis
AccessionPRJNA227458
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismSalmonella enterica[Taxonomy ID: 28901]
Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
SubmissionRegistration date: 20-Feb-2019
Wadsworth Center / NYSDOH
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)759
SRA Experiments765
Other datasets
BioSample760
Assembly759
Assembly details:
Assembly levelNumber of Assemblies
759
759
AssemblyLevelWGSBioSampleInfraspecies IdTaxonomy
GCA_006091875.1ContigAAEOHJ000000000SAMN04145981
NY58851607
GCA_006091655.1ContigAAEOHS000000000SAMN04196802
NY59589171
GCA_005953205.1ContigAAEEDL000000000SAMN04145978
NY58851695
GCA_005953185.1ContigAAEEDK000000000SAMN04145979
NY58851438
GCA_006634865.1ContigAAFVJE000000000SAMN04002969
NY57720235
GCA_006885325.1ContigAAGMXK000000000SAMN04145980
NY58851516
GCA_006879645.1ContigAAGNCK000000000SAMN04196803
NY59589192
GCA_006863285.1ContigAAGLQB000000000SAMN02344552
NY_swgs1001
GCA_006754805.1ContigAAGEMM000000000SAMN03795504
NY56423922
GCA_006691365.1ContigAAFZLX000000000SAMN03366400
NY-swgs1599
GCA_006689365.1ContigAAFZHS000000000SAMN03073803
NY-swgs1466
GCA_006689065.1ContigAAFZHJ000000000SAMN02979333
NY-swgs1384
GCA_007752715.1ContigAAITTK000000000SAMN04002965
NY57593952
GCA_007752145.1ContigAAITSC000000000SAMN03795505
NY56423955
GCA_007742115.1ContigAAISZZ000000000SAMN03272678
NY-swgs1563
GCA_007746675.1ContigAAITEK000000000SAMN03195947
NY-swgs1534
GCA_007834695.1ContigAAIYYP000000000SAMN03272680
NY-swgs1565
GCA_007816315.1ContigAAIYFS000000000SAMN04090074
NY58851760
GCA_007184975.1ContigAAHGGC000000000SAMN03795503
NY56423894
GCA_007184795.1ContigAAHGGD000000000SAMN03795502
NY56425384
GCA_007185675.1ContigAAHGGY000000000SAMN04002968
NY57720071
GCA_007185875.1ContigAAHGGX000000000SAMN04002967
NY57594935
GCA_007187435.1ContigAAHGKM000000000SAMN04262340
NY59478967
GCA_008014055.1ContigAAJJPZ000000000SAMN02676307
swgs1043
GCA_008013995.1ContigAAJJPO000000000SAMN02676285
swgs1021
GCA_008013935.1ContigAAJKDN000000000SAMN03272679
NY-swgs1564
GCA_008013895.1ContigAAJKDP000000000SAMN03272675
NY-swgs1560
GCA_008013855.1ContigAAJKDM000000000SAMN03272681
NY-swgs1566
GCA_008013875.1ContigAAJKDF000000000SAMN03272673
NY-swgs1558
GCA_008013795.1ContigAAJKDJ000000000SAMN03272676
NY-swgs1561
GCA_008013815.1ContigAAJKDG000000000SAMN03272674
NY-swgs1559
GCA_008013755.1ContigAAJKDO000000000SAMN03272677
NY-swgs1562
GCA_008013615.1ContigAAJKDB000000000SAMN03252738
NY-swgs1556
GCA_008013435.1ContigAAJKDR000000000SAMN03274457
NY-swgs1568
GCA_008013355.1ContigAAJKDY000000000SAMN03281192
NY-swgs1579
GCA_008013275.1ContigAAJKDS000000000SAMN03281099
NY-swgs1571
GCA_008013155.1ContigAAJKDW000000000SAMN03281101
NY-swgs1573
GCA_008013135.1ContigAAJKDU000000000SAMN03281102
NY-swgs1574
GCA_008013055.1ContigAAJKDT000000000SAMN03281100
NY-swgs1572
GCA_008012875.1ContigAAJKDL000000000SAMN03274456
NY-swgs1567
GCA_008016295.1ContigAAJJQH000000000SAMN02676312
swgs1048
GCA_008016315.1ContigAAJJQJ000000000SAMN02676319
swgs1055
GCA_008016275.1ContigAAJJQA000000000SAMN02676308
swgs1044
GCA_008016365.1ContigAAJJQT000000000SAMN02676321
swgs1057
GCA_008016255.1ContigAAJJQF000000000SAMN02676309
swgs1045
GCA_008016235.1ContigAAJJQC000000000SAMN02676302
swgs1038
GCA_008016175.1ContigAAJJPR000000000SAMN02676295
swgs1031
GCA_008016215.1ContigAAJJQB000000000SAMN02676306
swgs1042
GCA_008016195.1ContigAAJJPT000000000SAMN02676301
swgs1037
GCA_008016135.1ContigAAJJPY000000000SAMN02676294
swgs1030
GCA_008016155.1ContigAAJJPQ000000000SAMN02676297
swgs1033
GCA_008016055.1ContigAAJJPP000000000SAMN02676286
swgs1022
GCA_008016035.1ContigAAJJPL000000000SAMN02676290
swgs1026
GCA_008015975.1ContigAAJJPK000000000SAMN02676287
swgs1023
GCA_008016005.1ContigAAJJPJ000000000SAMN02676291
swgs1027
GCA_008026315.1ContigAAJLBX000000000SAMN03223260
NY-swgs1550
GCA_008026835.1ContigAAJLBB000000000SAMN03223262
NY-swgs1552
GCA_008026755.1ContigAAJLAV000000000SAMN03201716
NY-swgs1547
GCA_008027375.1ContigAAJLGY000000000SAMN03092693
NY-swgs1495
GCA_008027245.1ContigAAJLHA000000000SAMN03092696
NY-swgs1498
GCA_008029775.1ContigAAJLHI000000000SAMN03092699
NY-swgs1501
GCA_008029755.1ContigAAJLHS000000000SAMN03092697
NY-swgs1499
GCA_008029735.1ContigAAJLHQ000000000SAMN03069608
NY-swgs1460
GCA_008029695.1ContigAAJLHO000000000SAMN03092698
NY-swgs1500
GCA_008029395.1ContigAAJLGR000000000SAMN03092695
NY-swgs1497
GCA_008029335.1ContigAAJLGV000000000SAMN03092694
NY-swgs1496
GCA_008008945.1ContigAAJJTP000000000SAMN02693856
NY-swgs1233
GCA_008008625.1ContigAAJJUZ000000000SAMN02676368
swgs1202
GCA_008008385.1ContigAAJJSU000000000SAMN02676391
swgs1225
GCA_008007565.1ContigAAJJTR000000000SAMN02693857
NY-swgs1234
GCA_008007465.1ContigAAJJTO000000000SAMN02693858
NY-swgs1235
GCA_008007485.1ContigAAJJSY000000000SAMN02688943
swgs1227
GCA_008007445.1ContigAAJJTC000000000SAMN02688944
swgs1228
GCA_008007385.1ContigAAJJTK000000000SAMN02676366
swgs1200
GCA_008007295.1ContigAAJJSX000000000SAMN02676389
swgs1223
GCA_008007325.1ContigAAJJST000000000SAMN02676392
swgs1226
GCA_008007265.1ContigAAJJSP000000000SAMN02676390
swgs1224
GCA_008007205.1ContigAAJJSW000000000SAMN02676387
swgs1221
GCA_008007225.1ContigAAJJSR000000000SAMN02676388
swgs1222
GCA_008007185.1ContigAAJJSL000000000SAMN02676386
swgs1220
GCA_008007165.1ContigAAJJSM000000000SAMN02676384
swgs1218
GCA_008007145.1ContigAAJJSO000000000SAMN02676385
swgs1219
GCA_008007045.1ContigAAJJSC000000000SAMN02676360
swgs1194
GCA_008007105.1ContigAAJJSF000000000SAMN02676363
swgs1197
GCA_008007065.1ContigAAJJRZ000000000SAMN02676362
swgs1196
GCA_008007015.1ContigAAJJSB000000000SAMN02676359
swgs1095
GCA_008007085.1ContigAAJJSA000000000SAMN02676361
swgs1195
GCA_008006945.1ContigAAJJRW000000000SAMN02676353
swgs1089
GCA_008006995.1ContigAAJJRV000000000SAMN02676356
swgs1092
GCA_008006965.1ContigAAJJTJ000000000SAMN02676377
swgs1211
GCA_008006925.1ContigAAJJRQ000000000SAMN02676354
swgs1090
GCA_008006905.1ContigAAJJRX000000000SAMN02676358
swgs1094
GCA_008006885.1ContigAAJJRS000000000SAMN02676355
swgs1091
GCA_008006865.1ContigAAJJRR000000000SAMN02676349
swgs1085
GCA_008006845.1ContigAAJJRT000000000SAMN02676351
swgs1087
GCA_008006825.1ContigAAJJRU000000000SAMN02676352
swgs1088
GCA_008006805.1ContigAAJJRP000000000SAMN02676350
swgs1086
GCA_008006765.1ContigAAJJRN000000000SAMN02676345
swgs1081
GCA_008006785.1ContigAAJJRM000000000SAMN02676347
swgs1083
GCA_008006725.1ContigAAJJRL000000000SAMN02676344
swgs1080
GCA_008006705.1ContigAAJJRO000000000SAMN02676346
swgs1082
GCA_008006605.1ContigAAJJSJ000000000SAMN02676378
swgs1212
GCA_008006685.1ContigAAJJTM000000000SAMN02693855
NY-swgs1230
GCA_008006625.1ContigAAJJSD000000000SAMN02676374
swgs1208
GCA_008006655.1ContigAAJJTH000000000SAMN02676367
swgs1201
GCA_008006565.1ContigAAJJSH000000000SAMN02676371
swgs1205
GCA_008006535.1ContigAAJJSI000000000SAMN02676379
swgs1213
GCA_008006525.1ContigAAJJQK000000000SAMN02676316
swgs1052
GCA_008006485.1ContigAAJJSK000000000SAMN02676383
swgs1217
GCA_008006585.1ContigAAJJSG000000000SAMN02676376
swgs1210
GCA_008006505.1ContigAAJJSE000000000SAMN02676370
swgs1204
GCA_008006435.1ContigAAJJSQ000000000SAMN02676382
swgs1216
GCA_008006425.1ContigAAJJSN000000000SAMN02676380
swgs1214
GCA_008006405.1ContigAAJJRY000000000SAMN02676369
swgs1203
GCA_008004845.1ContigAAJKED000000000SAMN03292380
NY-swgs1583
GCA_008004825.1ContigAAJKEH000000000SAMN03292381
NY-swgs1584
GCA_008004805.1ContigAAJKEB000000000SAMN03292379
NY-swgs1582
GCA_008004765.1ContigAAJKDZ000000000SAMN03292378
NY-swgs1581
GCA_008004745.1ContigAAJKFI000000000SAMN03316883
NY-swgs1585
GCA_008004725.1ContigAAJKEC000000000SAMN03281105
NY-swgs1577
GCA_008004705.1ContigAAJKEF000000000SAMN03281193
NY-swgs1580
GCA_008004545.1ContigAAJKEA000000000SAMN03281103
NY-swgs1575
GCA_008004585.1ContigAAJKDV000000000SAMN03281104
NY-swgs1576
GCA_008004565.1ContigAAJKFD000000000SAMN03316885
NY-swgs1587
GCA_008004525.1ContigAAJJRH000000000SAMN02676340
swgs1076
GCA_008004445.1ContigAAJJRJ000000000SAMN02676339
swgs1075
GCA_008004505.1ContigAAJJRI000000000SAMN02676341
swgs1077
GCA_008004365.1ContigAAJJRA000000000SAMN02676333
swgs1069
GCA_008004485.1ContigAAJKDX000000000SAMN03281191
NY-swgs1578
GCA_008004385.1ContigAAJJRD000000000SAMN02676335
swgs1071
GCA_008004465.1ContigAAJJRG000000000SAMN02676342
swgs1078
GCA_008004425.1ContigAAJJRE000000000SAMN02676337
swgs1073
GCA_008004405.1ContigAAJJRF000000000SAMN02676338
swgs1074
GCA_008004345.1ContigAAJJRK000000000SAMN02676336
swgs1072
GCA_008004325.1ContigAAJJQZ000000000SAMN02676334
swgs1070
GCA_008004285.1ContigAAJJQX000000000SAMN02676331
swgs1067
GCA_008004305.1ContigAAJJRC000000000SAMN02676332
swgs1068
GCA_008004205.1ContigAAJJQP000000000SAMN02676320
swgs1056
GCA_008004265.1ContigAAJJQY000000000SAMN02676323
swgs1059
GCA_008004245.1ContigAAJJRB000000000SAMN02676330
swgs1066
GCA_008004225.1ContigAAJJQN000000000SAMN02676322
swgs1058
GCA_008004185.1ContigAAJJQM000000000SAMN02676318
swgs1054
GCA_008004165.1ContigAAJJQQ000000000SAMN02676317
swgs1053
GCA_008004145.1ContigAAJJQO000000000SAMN02676324
swgs1060
GCA_008004125.1ContigAAJJQI000000000SAMN02676314
swgs1050
GCA_008004105.1ContigAAJJQR000000000SAMN02676315
swgs1051
GCA_008004085.1ContigAAJJQL000000000SAMN02676313
swgs1049
GCA_008004065.1ContigAAJJQS000000000SAMN02676325
swgs1061
GCA_008004025.1ContigAAJJQE000000000SAMN02676305
swgs1041
GCA_008004045.1ContigAAJJQG000000000SAMN02676311
swgs1047
GCA_008004005.1ContigAAJJQD000000000SAMN02676310
swgs1046
GCA_008003985.1ContigAAJJPS000000000SAMN02676304
swgs1040
GCA_008003965.1ContigAAJJPX000000000SAMN02676298
swgs1034
GCA_008003945.1ContigAAJJPV000000000SAMN02676299
swgs1035
GCA_008003925.1ContigAAJJPU000000000SAMN02676300
swgs1036
GCA_008003885.1ContigAAJJPM000000000SAMN02676293
swgs1029
GCA_008003905.1ContigAAJJPW000000000SAMN02676296
swgs1032
GCA_008003865.1ContigAAJJQU000000000SAMN02676328
swgs1064
GCA_008003845.1ContigAAJJPD000000000SAMN02676288
swgs1024
GCA_008003825.1ContigAAJJPI000000000SAMN02676283
swgs1019
GCA_008003805.1ContigAAJJQW000000000SAMN02676327
swgs1063
GCA_008003745.1ContigAAJJPE000000000SAMN02676281
swgs1017
GCA_008003765.1ContigAAJJPH000000000SAMN02676289
swgs1025
GCA_008003685.1ContigAAJJPN000000000SAMN02676292
swgs1028
GCA_008003665.1ContigAAJJPA000000000SAMN02676282
swgs1018
GCA_008003585.1ContigAAJJQV000000000SAMN02676326
swgs1062
GCA_008003605.1ContigAAJJPG000000000SAMN02676284
swgs1020
GCA_008001495.1ContigAAJKFF000000000SAMN03316884
NY-swgs1586
GCA_008032885.1ContigAAJLDD000000000SAMN03252739
NY-swgs1557
GCA_008031715.1ContigAAJLKO000000000SAMN03140283
NY-swgs1520
GCA_008031655.1ContigAAJLJV000000000SAMN03103578
NY-swgs1507
GCA_008031555.1ContigAAJLKU000000000SAMN03140282
NY-swgs1519
GCA_008031495.1ContigAAJLKI000000000SAMN03140279
NY-swgs1516
GCA_008031395.1ContigAAJLMA000000000SAMN03154472
NY-swgs1523
GCA_008031375.1ContigAAJLMF000000000SAMN03154476
NY-swgs1527
GCA_008031295.1ContigAAJLKP000000000SAMN03140277
NY-swgs1514
GCA_008031255.1ContigAAJLKQ000000000SAMN03140278
NY-swgs1515
GCA_008031075.1ContigAAJLKX000000000SAMN03142768
NY-swgs1521
GCA_008030975.1ContigAAJLJG000000000SAMN03103576
NY-swgs1505
GCA_008030855.1ContigAAJLKA000000000SAMN03114901
NY-swgs1513
GCA_008030875.1ContigAAJLMG000000000SAMN03154475
NY-swgs1526
GCA_008030815.1ContigAAJLJM000000000SAMN03103579
NY-swgs1508
GCA_008030795.1ContigAAJLJU000000000SAMN03103575
NY-swgs1504
GCA_008030735.1ContigAAJLJL000000000SAMN03103580
NY-swgs1509
GCA_008030635.1ContigAAJLKS000000000SAMN03140281
NY-swgs1518
GCA_008030575.1ContigAAJLJF000000000SAMN03103577
NY-swgs1506
GCA_008030335.1ContigAAJLMB000000000SAMN03154474
NY-swgs1525
GCA_008030315.1ContigAAJLKN000000000SAMN03140280
NY-swgs1517
GCA_008026035.1ContigAAJLAU000000000SAMN03201717
NY-swgs1548
GCA_008025955.1ContigAAJLAP000000000SAMN03223263
NY-swgs1553
GCA_008025915.1ContigAAJLAN000000000SAMN03223265
NY-swgs1555
GCA_008025935.1ContigAAJLAO000000000SAMN03201715
NY-swgs1546
GCA_008025895.1ContigAAJLAQ000000000SAMN03201711
NY-swgs1542
GCA_008025875.1ContigAAJLAM000000000SAMN03223261
NY-swgs1551
GCA_008025855.1ContigAAJLAS000000000SAMN03201714
NY-swgs1545
GCA_008025815.1ContigAAJLAR000000000SAMN03201712
NY-swgs1543
GCA_008025775.1ContigAAJLAW000000000SAMN03223264
NY-swgs1554
GCA_008025315.1ContigAAJKZF000000000SAMN03195952
NY-swgs1539
GCA_008025195.1ContigAAJKZD000000000SAMN03195951
NY-swgs1538
GCA_008025255.1ContigAAJKZG000000000SAMN03195953
NY-swgs1540
GCA_008025215.1ContigAAJKYY000000000SAMN03195948
NY-swgs1535
GCA_008025095.1ContigAAJLBC000000000SAMN03223259
NY-swgs1549
GCA_008025115.1ContigAAJKZA000000000SAMN03195950
NY-swgs1537
GCA_008024335.1ContigAAJKXH000000000SAMN03165752
NY-swgs1531
GCA_008024375.1ContigAAJKXK000000000SAMN03165754
NY-swgs1533
GCA_008024245.1ContigAAJKXJ000000000SAMN03165751
NY-swgs1530
GCA_008024155.1ContigAAJKXM000000000SAMN03165753
NY-swgs1532
GCA_008023995.1ContigAAJKYS000000000SAMN03195949
NY-swgs1536
GCA_008087315.1ContigAAJONI000000000SAMN03019752
NY-swgs1446
GCA_008091705.1ContigAAJONS000000000SAMN03010345
NY-swgs1424
GCA_008091445.1ContigAAJOUW000000000SAMN02887238
NY-swgs1335
GCA_008091205.1ContigAAJOTT000000000SAMN02867857
NY-swgs1322
GCA_008091185.1ContigAAJOTS000000000SAMN02867861
NY-swgs1326
GCA_008091165.1ContigAAJOUN000000000SAMN02867858
NY-swgs1323
GCA_008088665.1ContigAAJOOU000000000SAMN03079648
NY-swgs1483
GCA_008088585.1ContigAAJOOK000000000SAMN03073808
NY-swgs1471
GCA_008088505.1ContigAAJOOI000000000SAMN03073806
NY-swgs1469
GCA_008088485.1ContigAAJOOO000000000SAMN03073811
NY-swgs1474
GCA_008088405.1ContigAAJOOT000000000SAMN03073809
NY-swgs1472
GCA_008088285.1ContigAAJOOQ000000000SAMN03019760
NY-swgs1454
GCA_008088205.1ContigAAJOOB000000000SAMN02990139
NY-swgs1389
GCA_008088145.1ContigAAJONZ000000000SAMN03010425
NY-swgs1417
GCA_008088125.1ContigAAJONV000000000SAMN03019754
NY-swgs1448
GCA_008087685.1ContigAAJONK000000000SAMN03010352
NY-swgs1431
GCA_008114265.1ContigAAJQKK000000000SAMN03470521
NY_55119574
GCA_008114225.1ContigAAJQKO000000000SAMN03470522
NY_55224652
GCA_008045175.1ContigAAJMAK000000000SAMN02905681
NY-swgs1352
GCA_008044865.1ContigAAJMAF000000000SAMN02905682
NY-swgs1353
GCA_008044715.1ContigAAJMAU000000000SAMN02921249
NY-swgs1361
GCA_008044655.1ContigAAJMAX000000000SAMN02921252
NY-swgs1364
GCA_008044635.1ContigAAJMAW000000000SAMN02921248
NY-swgs1360
GCA_008044575.1ContigAAJMAR000000000SAMN02921251
NY-swgs1363
GCA_008044555.1ContigAAJMGT000000000SAMN03001989
NY-swgs1404
GCA_008044475.1ContigAAJMAY000000000SAMN02921247
NY-swgs1359
GCA_008044415.1ContigAAJMAZ000000000SAMN02921246
NY-swgs1358
GCA_008048475.1ContigAAJMHO000000000SAMN03010423
NY-swgs1415
GCA_008048455.1ContigAAJMHL000000000SAMN03010421
NY-swgs1413
GCA_008048395.1ContigAAJMHP000000000SAMN03010420
NY-swgs1412
GCA_008048295.1ContigAAJMGU000000000SAMN03001996
NY-swgs1411
GCA_008048265.1ContigAAJMGW000000000SAMN03001995
NY-swgs1410
GCA_008048255.1ContigAAJMGM000000000SAMN03001986
NY-swgs1401
GCA_008048195.1ContigAAJMGD000000000SAMN03001987
NY-swgs1402
GCA_008048175.1ContigAAJMGB000000000SAMN03001994
NY-swgs1409
GCA_008048115.1ContigAAJMGF000000000SAMN03001984
NY-swgs1399
GCA_008048055.1ContigAAJMFX000000000SAMN03001991
NY-swgs1406
GCA_008048075.1ContigAAJMFT000000000SAMN03001988
NY-swgs1403
GCA_008048035.1ContigAAJMFV000000000SAMN03001985
NY-swgs1400
GCA_008047975.1ContigAAJMGP000000000SAMN03001993
NY-swgs1408
GCA_008047855.1ContigAAJMGH000000000SAMN03001990
NY-swgs1405
GCA_008047515.1ContigAAJMEW000000000SAMN02952857
NY-swgs1378
GCA_008047495.1ContigAAJMFB000000000SAMN02952852
NY-swgs1373
GCA_008047435.1ContigAAJMEU000000000SAMN02952856
NY-swgs1377
GCA_008047445.1ContigAAJMEN000000000SAMN02952849
NY-swgs1370
GCA_008047415.1ContigAAJMEO000000000SAMN02952854
NY-swgs1375
GCA_008047395.1ContigAAJMET000000000SAMN02952851
NY-swgs1372
GCA_008047335.1ContigAAJMEQ000000000SAMN02952850
NY-swgs1371
GCA_008047345.1ContigAAJMFA000000000SAMN02952858
NY-swgs1379
GCA_008047295.1ContigAAJMEM000000000SAMN02952848
NY-swgs1369
GCA_008047275.1ContigAAJMEP000000000SAMN02952855
NY-swgs1376
GCA_008047135.1ContigAAJMEF000000000SAMN02952853
NY-swgs1374
GCA_008046235.1ContigAAJMGX000000000SAMN03001992
NY-swgs1407
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NY-swgs1311
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NY-swgs1570
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NY56657578
GCA_016377285.1ContigAAYJAA000000000SAMN03274458
NY-swgs1569
GCA_016376945.1ContigAAYIZD000000000SAMN03892558
NY57120837
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NY56085813
GCA_016328325.1ContigAAYFYP000000000SAMN03470523
NY_55224659
GCA_016327645.1ContigAAYFXX000000000SAMN03983302
NY57379782
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NY59918848
SRA Data Details
ParameterValue
Data volume, Gbases342
Data volume, Tbytes0.21

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