ID 377666 - BioProject

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Accession: PRJNA377666 ID: 377666

Whole genome sequencing of chicken gut anaerobes

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This project is a component of the The Lactobacillus genus, a use case for Bactopia.

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216 additional projects are components of the The Lactobacillus genus, a use case for Bactopia..

A necessary step in the understanding a function of gut microbiota is to obtain gut anaerobes in pure cultures, sequence them completely, predict their characteristic features and use them in all downstream experiments. More...

Accession	PRJNA377666
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Juricova H et al., "The distribution of antibiotic resistance genes in chicken gut microbiota commensals.", Sci Rep, 2021 Feb 8;11(1):3290 Medvecky M et al., "Whole genome sequencing and function prediction of 133 gut anaerobes isolated from chicken caecum in pure cultures.", BMC Genomics, 2018 Jul 31;19(1):561
Submission	Registration date: 2-Mar-2017 Veterinary Research Institute

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	10411
WGS master	374
SRA Experiments	476
Protein Sequences	383144
Publications
PubMed	2
PMC	2
Other datasets
BioSample	474
Assembly	374

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

374
374

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_030371665.1	JAUDBR000000000	SAMN34359484	ET81	Actinomyces viscosus
GCA_002161325.1	NFHJ00000000	SAMN06473757	An78	Akkermansia muciniphila
GCA_002159215.1	NFHB00000000	SAMN06473769	An90	Alistipes onderdonkii
GCA_002161005.1	NFLR00000000	SAMN06473588	An116	Alistipes sp. An116
GCA_002159425.1	NFIO00000000	SAMN06473718	An31A	Alistipes sp. An31A
GCA_002159375.1	NFIA00000000	SAMN06473737	An54	Alistipes sp. An54
GCA_002161445.1	NFHT00000000	SAMN06473744	An66	Alistipes sp. An66
GCA_030372185.1	JAUDCL000000000	SAMN34359457	ET340	Allofournierella massiliensis
GCA_030371625.1	JAUDCG000000000	SAMN34359463	ET39	Amedibacillus dolichus
GCA_002160015.1	NFJT00000000	SAMN06473664	An201	Anaerofilum sp. An201
GCA_002160515.1	NFKS00000000	SAMN06473636	An172	Anaeromassilibacillus sp. An172
GCA_002160025.1	NFJU00000000	SAMN06473663	An200	Anaeromassilibacillus sp. An200
GCA_002159845.1	NFJK00000000	SAMN06473682	An250	Anaeromassilibacillus sp. An250
GCA_002161375.1	NFHM00000000	SAMN06473754	An75	Anaerotignum lactatifermentans
GCA_016902535.1	JACSNY000000000	SAMN14913541	An390	Anaerotignum lactatifermentans
GCA_016902195.1	JACSNV000000000	SAMN14913558	An431b	Anaerotignum lactatifermentans
GCA_016901915.1	JACSNT000000000	SAMN14913574	An514	Anaerotignum lactatifermentans
GCA_002160465.1	NFKQ00000000	SAMN06473638	An174	Anaerotruncus colihominis
GCA_002160445.1	NFKP00000000	SAMN06473639	An175	Anaerotruncus colihominis
GCA_002159815.1	NFJJ00000000	SAMN06473683	An251	Anaerotruncus colihominis
GCA_030385675.1	JAUEIG000000000	SAMN34359445	ET127	Bacillus aerophilus
GCA_016900175.1	JACJJT000000000	SAMN14913627	An806	Bacillus cereus
GCA_016902155.1	JACJLK000000000	SAMN14913563	An441	Bacillus licheniformis
GCA_023337095.1	JAMBLM000000000	SAMN27738368	ET2	Bacteroides caecicola
GCA_016900695.1	JACJKJ000000000	SAMN14913600	An768	Bacteroides caecicola
GCA_030385575.1	JAUEIN000000000	SAMN34359414	45_SSukc10	Bacteroides caecigallinarum
GCA_030385475.1	JAUEIL000000000	SAMN34359422	68_SSukc20	Bacteroides caecigallinarum
GCA_030385735.1	JAUEIT000000000	SAMN34359368	1_COKtk	Bacteroides caecigallinarum
GCA_016902245.1	JACJLP000000000	SAMN14913555	An428b	Bacteroides caecigallinarum
GCA_016902295.1	JACJLQ000000000	SAMN14913554	An428a	Bacteroides caecigallinarum
GCA_016902515.1	JACJLX000000000	SAMN14913545	An406	Bacteroides caecigallinarum
GCA_016901995.1	JACJLE000000000	SAMN14913569	An496	Bacteroides caecigallinarum
GCA_002160225.1	NFKE00000000	SAMN06473652	An189	Bacteroides clarus
GCA_002161685.1	NFII00000000	SAMN06473725	An43	Bacteroides clarus
GCA_030371675.1	JAUDCF000000000	SAMN34359464	ET4	Bacteroides eggerthii
GCA_030371565.1	JAUDCD000000000	SAMN34359466	ET474	Bacteroides gallinaceum
GCA_030372245.1	JAUDCP000000000	SAMN34359452	ET238	Bacteroides gallinaceum
GCA_030373775.1	JAUDEN000000000	SAMN34359373	109_WCHN	Bacteroides gallinaceum
GCA_030385745.1	JAUEIS000000000	SAMN34359378	121_Egel	Bacteroides gallinaceum
GCA_030385615.1	JAUEIP000000000	SAMN34359405	25_COK	Bacteroides gallinaceum
GCA_030385455.1	JAUEII000000000	SAMN34359430	84_SSukc20	Bacteroides gallinaceum
GCA_016901875.1	JACJKZ000000000	SAMN14913577	An558	Bacteroides gallinaceum
GCA_016899895.1	JACJJJ000000000	SAMN14913640	An821	Bacteroides gallinaceum
GCA_016899805.1	JACJJF000000000	SAMN14913644	An825	Bacteroides gallinaceum
GCA_016900355.1	JACJKA000000000	SAMN14913619	An793	Bacteroides mediterraneensis
GCA_016900245.1	JACJJW000000000	SAMN14913624	An801	Bacteroides mediterraneensis
GCA_016899905.1	JACJJI000000000	SAMN14913641	An822	Bacteroides mediterraneensis
GCA_002160595.1	NFKW00000000	SAMN06473630	An161	Bacteroides ovatus
GCA_002160215.1	NFKD00000000	SAMN06473653	An19	Bacteroides sp. An19
GCA_002159755.1	NFJG00000000	SAMN06473699	An269	Bacteroides sp. An269
GCA_002159615.1	NFJA00000000	SAMN06473706	An279	Bacteroides sp. An279
GCA_002161765.1	NFIN00000000	SAMN06473719	An322	Bacteroides sp. An322
GCA_002161565.1	NFIC00000000	SAMN06473732	An51A	Bacteroides sp. An51A
GCA_024733745.1	JANRHN000000000	SAMN30278308	ET225	Bacteroides sp. ET225
GCA_024733815.1	JANRHK000000000	SAMN30278305	ET336	Bacteroides sp. ET336
GCA_030518095.1	JAULLJ000000000	SAMN34359468	ET489	Bacteroides sp. ET489
GCA_023336905.1	JAMBLS000000000	SAMN27738374	ET71	Bacteroides sp. ET71
GCA_002161435.1	NFHS00000000	SAMN06473745	An67	Bacteroides uniformis
GCA_002161135.1	NFLX00000000	SAMN06473578	An107	Bacteroides xylanisolvens
GCA_002161115.1	NFLW00000000	SAMN06473580	An109	Bacteroides xylanisolvens
GCA_002159975.1	NFJR00000000	SAMN06473666	An22	Barnesiella sp. An22
GCA_002161555.1	NFHZ00000000	SAMN06473738	An55	Barnesiella sp. An55
GCA_024733785.1	JANRHM000000000	SAMN30278307	ET7	Barnesiella sp. ET7
GCA_030371925.1	JAUDDV000000000	SAMN34359399	175_run60	Barnesiella viscericola
GCA_030374005.1	JAUDEQ000000000	SAMN34359370	103_BHI	Bifidobacterium pullorum
GCA_016899575.1	JACJMG000000000	SAMN14913655	An845	Bifidobacterium pullorum subsp. saeculare
GCA_016899725.1	JACLYU000000000	SAMN14913651	An836	Bifidobacterium pullorum subsp. saeculare
GCA_016899675.1	JACJMI000000000	SAMN14913649	An831	Bifidobacterium pullorum subsp. saeculare
GCA_016899995.1	JACJMJ000000000	SAMN14913635	An816	Bifidobacterium pullorum subsp. saeculare
GCA_016900615.1	JACJML000000000	SAMN14913607	An775	Bifidobacterium pullorum subsp. saeculare
GCA_016900135.1	JACJUA000000000	SAMN14913628	An807	Bifidobacterium ruminantium
GCA_002159835.1	NFJL00000000	SAMN06473681	An249	Blautia sp. An249
GCA_002161645.1	NFIF00000000	SAMN06473728	An46	Blautia sp. An46
GCA_002161285.1	NFHH00000000	SAMN06473761	An81	Blautia sp. An81
GCA_002160385.1	NFKL00000000	SAMN06473643	An179	Butyricicoccus pullicaecorum
GCA_002160355.1	NFKK00000000	SAMN06473645	An180	Butyricicoccus pullicaecorum
GCA_002161485.1	NFHW00000000	SAMN06473741	An62	Butyricimonas sp. An62
GCA_016901975.2	JACJMN000000000	SAMN14913571	An502	Caecibacteroides pullorum
GCA_016902375.1	JACJMO000000000	SAMN14913549	An421	Caecibacteroides pullorum
GCA_030372105.1	JAUDBQ000000000	SAMN34359485	ET82	Cellulomonas cellasea
GCA_002159945.1	NFJQ00000000	SAMN06473667	An23	Cloacibacillus sp. An23
GCA_030372205.1	JAUDDA000000000	SAMN34359439	Avi11	Clostridium butyricum
GCA_030371725.1	JAUDBX000000000	SAMN34359474	ET61	Clostridium butyricum
GCA_030373565.1	JAUDCX000000000	SAMN34359442	Avi8B	Clostridium cadaveris
GCA_002160285.1	NFKH00000000	SAMN06473648	An185	Clostridium perfringens
GCA_002161405.1	NFHR00000000	SAMN06473746	An68	Clostridium perfringens
GCA_016900835.1	JACJLL000000000	SAMN14913562	An435	Clostridium saudiense
GCA_016902275.1	JACSNW000000000	SAMN14913557	An430	Clostridium saudiense
GCA_016902235.1	JACSNU000000000	SAMN14913561	An434a	Clostridium saudiense
GCA_030385715.1	JAUEIR000000000	SAMN34359390	15_COKtk	Collinsella ihumii
GCA_030385495.1	JAUEIM000000000	SAMN34359418	53_Shaedler_sukc10	Collinsella ihumii
GCA_030385545.1	JAUEIQ000000000	SAMN34359400	176_SSukc20	Collinsella ihumii
GCA_030371525.1	JAUDCJ000000000	SAMN34359459	ET35	Collinsella intestinalis
GCA_016899625.1	JACJJA000000000	SAMN14913653	An840	Collinsella intestinalis
GCA_016901635.1	JACJKR000000000	SAMN14913589	An713	Collinsella intestinalis
GCA_016901585.1	JACLZB000000000	SAMN14913591	An719	Collinsella intestinalis
GCA_002160065.1	NFJW00000000	SAMN06473661	An2	Collinsella sp. An2
GCA_002159765.1	NFJH00000000	SAMN06473698	An268	Collinsella sp. An268
GCA_002159695.1	NFJE00000000	SAMN06473702	An271	Collinsella sp. An271
GCA_002161805.1	NFIP00000000	SAMN06473717	An307	Collinsella sp. An307
GCA_002159335.1	NFHP00000000	SAMN06473748	An7	Collinsella sp. An7
GCA_030371825.1	JAUDDM000000000	SAMN34359416	50_SSukc10	Collinsella tanakaei
GCA_030373545.1	JAUDCO000000000	SAMN34359454	ET30	Collinsella tanakaei
GCA_030373665.1	JAUDCR000000000	SAMN34359450	ET226	Collinsella tanakaei
GCA_016901655.1	JACJMM000000000	SAMN14913588	An712	Collinsella tanakaei
GCA_016902615.1	JACJMB000000000	SAMN14913539	An368	Collinsella tanakaei
GCA_016900395.1	JACJMK000000000	SAMN14913615	An789	Collinsella tanakaei
GCA_016900375.1	JACJKB000000000	SAMN14913617	An791	Collinsella tanakaei
GCA_016900195.1	JACJJV000000000	SAMN14913625	An804	Collinsella tanakaei
GCA_016900335.1	JACLZD000000000	SAMN14913618	An792	Collinsella tanakaei
GCA_016899715.1	JACJMH000000000	SAMN14913650	An833	Collinsella tanakaei
GCA_016900545.1	JACLYW000000000	SAMN14913610	An779	Coprobacillus cateniformis
GCA_030373845.1	JAUDEK000000000	SAMN34359380	126_WCHN	Cutibacterium acnes
GCA_030373875.1	JAUDEP000000000	SAMN34359371	104_BHI	Desulfovibrio piger
GCA_030372365.1	JAUDCT000000000	SAMN34359448	ET209	Desulfovibrio piger
GCA_016902475.1	JACJLY000000000	SAMN14913544	An401	Desulfovibrio piger
GCA_016902435.1	JACJLW000000000	SAMN14913547	An418	Desulfovibrio piger
GCA_002159665.1	NFJC00000000	SAMN06473704	An276	Desulfovibrio sp. An276
GCA_016900655.1	JACJKH000000000	SAMN14913602	An770	Drancourtella massiliensis
GCA_002160935.1	NFLO00000000	SAMN06473592	An12	Drancourtella sp. An12
GCA_002160415.1	NFKN00000000	SAMN06473641	An177	Drancourtella sp. An177
GCA_002159995.1	NFJS00000000	SAMN06473665	An210	Drancourtella sp. An210
GCA_002161525.1	NFHY00000000	SAMN06473739	An57	Drancourtella sp. An57
GCA_002159705.1	NFJD00000000	SAMN06473703	An273	Elusimicrobium sp. An273
GCA_002159295.1	NFHO00000000	SAMN06473749	An70	Enorma massiliensis
GCA_016900415.1	JACJKC000000000	SAMN14913614	An788	Enorma massiliensis
GCA_016902655.1	JACJME000000000	SAMN14913536	An340a	Enorma massiliensis
GCA_030372005.1	JAUDDZ000000000	SAMN34359394	154_Feed	Enorma phocaeensis
GCA_016901575.1	JACJKQ000000000	SAMN14913590	An718	Enorma phocaeensis
GCA_030373645.1	JAUDCM000000000	SAMN34359456	ET318	Enterocloster aldenensis
GCA_002161395.1	NFHQ00000000	SAMN06473747	An69	Enterococcus cecorum
GCA_002160685.1	NFLC00000000	SAMN06473616	An144	Enterococcus cecorum
GCA_030371645.1	JAUDCH000000000	SAMN34359462	ET38	Enterococcus cecorum
GCA_016902075.1	JACJLG000000000	SAMN14913567	An483	Enterococcus cecorum
GCA_016900575.1	JACJKG000000000	SAMN14913606	An774	Enterococcus gallinarum
GCA_030372335.1	JAUDCW000000000	SAMN34359443	Avi9B	Enterococcus hirae
GCA_002160675.1	NFLA00000000	SAMN06473620	An15	Erysipelatoclostridium sp. An15
GCA_002160495.1	NFKR00000000	SAMN06473637	An173	Erysipelatoclostridium sp. An173
GCA_002160185.1	NFKC00000000	SAMN06473654	An190	Escherichia coli
GCA_030385645.1	JAUEID000000000	SAMN34359483	ET78	Escherichia coli
GCA_016900455.1	JACJUB000000000	SAMN14913612	An786	Escherichia coli
GCA_002161065.1	NFLV00000000	SAMN06473581	An11	Eubacterium sp. An11
GCA_002159465.1	NFIR00000000	SAMN06473715	An3	Eubacterium sp. An3
GCA_002160915.1	NFLM00000000	SAMN06473594	An121	Faecalibacterium sp. An121
GCA_002160895.1	NFLL00000000	SAMN06473595	An122	Faecalibacterium sp. An122
GCA_002160175.1	NFKB00000000	SAMN06473655	An192	Faecalibacterium sp. An192
GCA_002161515.1	NFHX00000000	SAMN06473740	An58	Faecalibacterium sp. An58
GCA_002161315.1	NFHK00000000	SAMN06473756	An77	Faecalibacterium sp. An77
GCA_016899835.1	JACSNO000000000	SAMN14913645	An826	Faecalicatena contorta
GCA_016899555.1	JACSNM000000000	SAMN14913656	An846	Faecalicatena contorta
GCA_016900595.1	JACLYY000000000	SAMN14913605	An773	Faecalicatena fissicatena
GCA_030372305.1	JAUDCS000000000	SAMN34359449	ET224	Faecalicoccus acidiformans
GCA_016902385.1	JACJLU000000000	SAMN14913550	An423	Faecalicoccus acidiformans
GCA_030373685.1	JAUDCN000000000	SAMN34359455	ET304	Faecalicoccus pleomorphus
GCA_016900735.1	JACJKL000000000	SAMN14913598	An766	Faecalicoccus pleomorphus
GCA_016900235.1	JACJJX000000000	SAMN14913623	An797	Faecalicoccus pleomorphus
GCA_016899495.1	JACJIZ000000000	SAMN14913657	An848	Faecalicoccus pleomorphus
GCA_002161475.1	NFHU00000000	SAMN06473743	An64	Faecalitalea cylindroides
GCA_002160375.1	NFKM00000000	SAMN06473642	An178	Faecalitalea cylindroides
GCA_016899655.1	JACJIY000000000	SAMN14913658	An849	Faecalitalea cylindroides
GCA_016900755.1	JACJKM000000000	SAMN14913597	An765	Faecalitalea cylindroides
GCA_002159865.1	NFJM00000000	SAMN06473680	An248	Flavonifractor plautii
GCA_016900425.1	JACLYV000000000	SAMN14913616	An790	Flavonifractor plautii
GCA_016899585.1	JACJIW000000000	SAMN14913660	An856	Flavonifractor plautii
GCA_002161215.1	NFMB00000000	SAMN06473570	An10	Flavonifractor sp. An10
GCA_002161175.1	NFMA00000000	SAMN06473571	An100	Flavonifractor sp. An100
GCA_002161085.1	NFLU00000000	SAMN06473584	An112	Flavonifractor sp. An112
GCA_002160795.1	NFLG00000000	SAMN06473608	An135	Flavonifractor sp. An135
GCA_002159455.1	NFIQ00000000	SAMN06473716	An306	Flavonifractor sp. An306
GCA_002161755.1	NFIL00000000	SAMN06473722	An4	Flavonifractor sp. An4
GCA_002159385.1	NFIB00000000	SAMN06473734	An52	Flavonifractor sp. An52
GCA_002159265.1	NFHG00000000	SAMN06473762	An82	Flavonifractor sp. An82
GCA_002161245.1	NFHC00000000	SAMN06473768	An9	Flavonifractor sp. An9
GCA_002159225.1	NFHA00000000	SAMN06473770	An91	Flavonifractor sp. An91
GCA_002159175.1	NFGZ00000000	SAMN06473771	An92	Flavonifractor sp. An92
GCA_016900045.1	JACSNP000000000	SAMN14913634	An814	Fusobacterium mortiferum
GCA_016902335.1	JACJLT000000000	SAMN14913551	An425	Fusobacterium mortiferum
GCA_016902555.1	JACJMA000000000	SAMN14913542	An397	Fusobacterium mortiferum
GCA_016901605.1	JACJKP000000000	SAMN14913592	An723	Gemmiger formicilis
GCA_016901715.1	JACJKT000000000	SAMN14913586	An578	Gemmiger formicilis
GCA_016900095.1	JACJJP000000000	SAMN14913632	An812	Gemmiger formicilis
GCA_002160955.1	NFLN00000000	SAMN06473593	An120	Gemmiger sp. An120
GCA_002160145.1	NFKA00000000	SAMN06473656	An194	Gemmiger sp. An194
GCA_002161595.1	NFID00000000	SAMN06473731	An50	Gemmiger sp. An50
GCA_002159185.1	NFHD00000000	SAMN06473766	An87	Gemmiger sp. An87
GCA_002159915.1	NFJP00000000	SAMN06473668	An230	Gordonibacter sp. An230
GCA_002159935.1	NFJO00000000	SAMN06473669	An232A	Gordonibacter sp. An232A
GCA_002159895.1	NFJN00000000	SAMN06473672	An234A	Gordonibacter urolithinfaciens
GCA_016901815.1	JACSNR000000000	SAMN14913581	An564	Hydrogenoanaerobacterium saccharovorans
GCA_016901775.1	JACJKW000000000	SAMN14913582	An565	Intestinimonas butyriciproducens
GCA_016901985.1	JACSOA000000000	SAMN14913572	An503	Intestinimonas butyriciproducens
GCA_002160985.1	NFLQ00000000	SAMN06473590	An118	Lachnoclostridium sp. An118
GCA_002160825.1	NFLI00000000	SAMN06473605	An131	Lachnoclostridium sp. An131
GCA_002160765.1	NFLF00000000	SAMN06473610	An138	Lachnoclostridium sp. An138
GCA_002160755.1	NFLE00000000	SAMN06473612	An14	Lachnoclostridium sp. An14
GCA_002160525.1	NFKT00000000	SAMN06473635	An169	Lachnoclostridium sp. An169
GCA_002160325.1	NFKJ00000000	SAMN06473646	An181	Lachnoclostridium sp. An181
GCA_002160135.1	NFJZ00000000	SAMN06473657	An196	Lachnoclostridium sp. An196
GCA_002159505.1	NFIS00000000	SAMN06473714	An298	Lachnoclostridium sp. An298
GCA_002161355.1	NFHL00000000	SAMN06473755	An76	Lachnoclostridium sp. An76
GCA_002160535.1	NFKU00000000	SAMN06473634	An168	Lacrimispora saccharolytica
GCA_030371835.1	JAUDDQ000000000	SAMN34359410	36_SSukc10	Lacrimispora saccharolytica
GCA_016899975.1	JACJJN000000000	SAMN14913636	An817	Lacrimispora saccharolytica
GCA_030373605.1	JAUDEG000000000	SAMN34359386	140_Shaedl_plusK	Lactobacillus crispatus
GCA_016901535.1	JACLZA000000000	SAMN14913593	An726	Lactobacillus crispatus
GCA_002160635.1	NFKZ00000000	SAMN06473623	An153	Lactobacillus gallinarum
GCA_002161035.1	NFLS00000000	SAMN06473587	An115	Lactobacillus gallinarum
GCA_002160975.1	NFLP00000000	SAMN06473591	An119	Lactobacillus gallinarum
GCA_002161165.1	NFLZ00000000	SAMN06473572	An101	Lactobacillus gallinarum
GCA_030373805.1	JAUDEE000000000	SAMN34359388	144_Shaedl_plusK	Lactobacillus gallinarum
GCA_030372385.1	JAUDDX000000000	SAMN34359396	160_Gplus	Lactobacillus gallinarum
GCA_016902135.1	JACJLJ000000000	SAMN14913564	An447	Lactobacillus gallinarum
GCA_016902675.1	JACJMF000000000	SAMN14913535	An338a	Lactobacillus gallinarum
GCA_002160105.1	NFJY00000000	SAMN06473658	An197	Lactobacillus johnsonii
GCA_030385485.1	JAUEIE000000000	SAMN34359461	ET37	Leyella lascolaii
GCA_030385695.1	JAUEIF000000000	SAMN34359447	ET15	Leyella lascolaii
GCA_030373825.1	JAUDED000000000	SAMN34359389	147_Schadl_VitK	Ligilactobacillus agilis
GCA_016900285.1	JACJJY000000000	SAMN14913622	An796	Ligilactobacillus agilis
GCA_016900275.1	JACJJZ000000000	SAMN14913621	An795	Ligilactobacillus agilis
GCA_030373615.1	JAUDEB000000000	SAMN34359392	151_Feed	Ligilactobacillus aviarius
GCA_016902635.1	JACJMD000000000	SAMN14913537	An347	Ligilactobacillus aviarius
GCA_002159345.1	NFHV00000000	SAMN06473742	An63	Ligilactobacillus salivarius
GCA_002161265.1	NFHF00000000	SAMN06473764	An84	Ligilactobacillus salivarius
GCA_002160855.1	NFLK00000000	SAMN06473601	An128	Ligilactobacillus salivarius
GCA_030373745.1	JAUDEC000000000	SAMN34359391	150_Feed	Ligilactobacillus salivarius
GCA_030372485.1	JAUDCU000000000	SAMN34359446	ET141	Ligilactobacillus salivarius
GCA_030372045.1	JAUDDY000000000	SAMN34359395	156_Feed	Ligilactobacillus salivarius
GCA_030371905.1	JAUDDR000000000	SAMN34359409	30_SSukc10	Ligilactobacillus salivarius
GCA_030371315.1	JAUDDE000000000	SAMN34359433	92_BHI	Ligilactobacillus salivarius
GCA_016902115.1	JACJLI000000000	SAMN14913565	An453	Ligilactobacillus salivarius
GCA_016900465.1	JACJKD000000000	SAMN14913613	An787	Ligilactobacillus salivarius
GCA_016900035.1	JACJJO000000000	SAMN14913633	An813	Ligilactobacillus salivarius
GCA_030518115.1	JAULLI000000000	SAMN34359375	110_WCHN	Ligilactobacillus sp. 110_WCHN
GCA_016900115.1	JACJJQ000000000	SAMN14913631	An810	Limosilactobacillus alvi
GCA_016901675.1	JACJKU000000000	SAMN14913585	An574	Limosilactobacillus coleohominis
GCA_016901895.1	JACJLB000000000	SAMN14913575	An526	Limosilactobacillus coleohominis
GCA_016900495.1	JACLYX000000000	SAMN14913609	An777	Limosilactobacillus ingluviei
GCA_030371305.1	JAUDCY000000000	SAMN34359441	Avi25	Limosilactobacillus mucosae
GCA_030373575.1	JAUDCZ000000000	SAMN34359440	Avi24	Limosilactobacillus mucosae
GCA_030373945.1	JAUDEO000000000	SAMN34359372	105_WCHN	Limosilactobacillus panis
GCA_030373995.1	JAUDEM000000000	SAMN34359376	116_WCHN	Limosilactobacillus pontis
GCA_030372225.1	JAUDDW000000000	SAMN34359397	161_Gplus	Limosilactobacillus pontis
GCA_002159305.1	NFHN00000000	SAMN06473750	An71	Limosilactobacillus reuteri
GCA_002160565.1	NFKV00000000	SAMN06473632	An166	Limosilactobacillus reuteri
GCA_016900715.1	JACJKI000000000	SAMN14913601	An769	Limosilactobacillus reuteri
GCA_030372015.1	JAUDDS000000000	SAMN34359407	28_SSukc10	Limosilactobacillus vaginalis
GCA_030371875.1	JAUDDT000000000	SAMN34359402	21_COK	Limosilactobacillus vaginalis
GCA_030371965.1	JAUDDU000000000	SAMN34359401	180_SSukc20	Limosilactobacillus vaginalis
GCA_030371915.1	JAUDDO000000000	SAMN34359413	40_SSukc10	Limosilactobacillus vaginalis
GCA_030371355.1	JAUDDF000000000	SAMN34359432	90_Shaedler_sukc20	Limosilactobacillus vaginalis
GCA_030373865.1	JAUDEI000000000	SAMN34359383	131_WCHN	Limosilactobacillus vaginalis
GCA_023336985.1	JAMBLP000000000	SAMN27738371	ET9	Marseilla massiliensis
GCA_016899955.1	JACJJL000000000	SAMN14913638	An819	Marseilla massiliensis
GCA_016899855.1	JACJJG000000000	SAMN14913643	An824	Marseilla massiliensis
GCA_002161155.1	NFLY00000000	SAMN06473576	An105	Massilimicrobiota sp. An105
GCA_002160815.1	NFLH00000000	SAMN06473607	An134	Massilimicrobiota sp. An134
GCA_002160725.1	NFLD00000000	SAMN06473615	An142	Massilimicrobiota sp. An142
GCA_002159255.1	NFHI00000000	SAMN06473760	An80	Massilimicrobiota sp. An80
GCA_002160865.1	NFLJ00000000	SAMN06473603	An13	Massilimicrobiota timonensis
GCA_030372155.1	JAUDCK000000000	SAMN34359458	ET341	Massilimicrobiota timonensis
GCA_016901495.1	JACJKO000000000	SAMN14913594	An731	Massilimicrobiota timonensis
GCA_030372145.1	JAUDBZ000000000	SAMN34359472	ET6	Mediterranea massiliensis
GCA_030371595.1	JAUDCI000000000	SAMN34359460	ET36	Mediterranea massiliensis
GCA_030373965.1	JAUDEL000000000	SAMN34359377	118_WCHN	Mediterranea massiliensis
GCA_016900635.1	JACLYZ000000000	SAMN14913604	An772	Mediterranea massiliensis
GCA_002160055.1	NFJV00000000	SAMN06473662	An20	Mediterranea sp. An20
GCA_023337025.1	JAMBLN000000000	SAMN27738369	ET5	Mediterranea sp. ET5
GCA_030371415.1	JAUDCC000000000	SAMN34359467	ET488	Mediterraneibacter glycyrrhizinilyticus
GCA_030372265.1	JAUDCQ000000000	SAMN34359451	ET229	Mediterraneibacter glycyrrhizinilyticus
GCA_030385535.1	JAUEIK000000000	SAMN34359425	70_Shaedler_sukc20	Mediterraneibacter glycyrrhizinilyticus
GCA_030385595.1	JAUEIO000000000	SAMN34359412	39_SSukc10	Mediterraneibacter glycyrrhizinilyticus
GCA_016900515.1	JACJKE000000000	SAMN14913611	An785	Mediterraneibacter glycyrrhizinilyticus
GCA_016900155.1	JACJJS000000000	SAMN14913629	An808	Mediterraneibacter glycyrrhizinilyticus
GCA_016902345.1	JACJLR000000000	SAMN14913553	An427	Mediterraneibacter glycyrrhizinilyticus
GCA_016900535.1	JACJKF000000000	SAMN14913608	An776	Megamonas funiformis
GCA_016899505.1	JACJIV000000000	SAMN14913661	An949	Megamonas funiformis
GCA_002159575.1	NFIW00000000	SAMN06473710	An288	Megamonas hypermegale
GCA_030371585.1	JAUDCE000000000	SAMN34359465	ET432	Megamonas hypermegale
GCA_016900075.1	JACJJR000000000	SAMN14913630	An809	Megamonas hypermegale
GCA_016902485.1	JACJLZ000000000	SAMN14913543	An400	Megamonas hypermegale
GCA_016900185.1	JACJJU000000000	SAMN14913626	An805	Megamonas rupellensis
GCA_016899685.1	JACJJB000000000	SAMN14913652	An838	Megasphaera elsdenii
GCA_030385635.1	JAUEIJ000000000	SAMN34359429	79_Shaedler_sukc20	Megasphaera hexanoica
GCA_002163455.1	NFIY00000000	SAMN06473708	An286	Megasphaera sp. An286
GCA_016900675.1	JACJUC000000000	SAMN14913603	An771	Megasphaera stantonii
GCA_016901855.1	JACJKY000000000	SAMN14913578	An559	Merdimmobilis hominis
GCA_016902035.1	JACJLD000000000	SAMN14913570	An499	Mordavella massiliensis
GCA_016901695.1	JACJKS000000000	SAMN14913587	An582	Mordavella massiliensis
GCA_016902415.1	JACJLV000000000	SAMN14913548	An420c	Mordavella massiliensis
GCA_002159585.1	NFIX00000000	SAMN06473709	An287	Muribaculum sp. An287
GCA_002159555.1	NFIV00000000	SAMN06473711	An289	Muribaculum sp. An289
GCA_030372125.1	JAUDBP000000000	SAMN34359486	ET83	Oceanobacillus oncorhynchi
GCA_002159415.1	NFIM00000000	SAMN06473721	An39	Odoribacter splanchnicus
GCA_002161635.1	NFIG00000000	SAMN06473727	An45	Odoribacter splanchnicus
GCA_016900315.1	JACSNQ000000000	SAMN14913620	An794	Olsenella profusa
GCA_002160255.1	NFKF00000000	SAMN06473651	An188	Olsenella sp. An188
GCA_002159735.1	NFJF00000000	SAMN06473701	An270	Olsenella sp. An270
GCA_002159625.1	NFIZ00000000	SAMN06473707	An285	Olsenella sp. An285
GCA_002159535.1	NFIU00000000	SAMN06473712	An290	Olsenella sp. An290
GCA_002159495.1	NFIT00000000	SAMN06473713	An293	Olsenella sp. An293
GCA_016899935.1	JACJJK000000000	SAMN14913639	An820	Olsenella uli
GCA_016900795.1	JACLZE000000000	SAMN14913595	An732	Olsenella uli
GCA_016900775.1	JACJKN000000000	SAMN14913596	An733	Olsenella uli
GCA_030385375.1	JAUEIH000000000	SAMN34359438	Avi10B	Oscillibacter valericigenes
GCA_016902445.1	JACSNX000000000	SAMN14913546	An411	Oscillibacter valericigenes
GCA_016901795.1	JACSNS000000000	SAMN14913580	An563	Oscillibacter valericigenes
GCA_002160095.1	NFJX00000000	SAMN06473660	An199	Parabacteroides distasonis
GCA_002161725.1	NFIJ00000000	SAMN06473724	An42	Parabacteroides johnsonii
GCA_002159645.1	NFJB00000000	SAMN06473705	An277	Parabacteroides sp. An277
GCA_030371455.1	JAUDBY000000000	SAMN34359473	ET60	Paraclostridium benzoelyticum
GCA_023336895.1	JAMBLT000000000	SAMN27738375	ET73	Parasutterella secunda
GCA_024733725.1	JANRHP000000000	SAMN30278310	ET75	Parasutterella secunda
GCA_030371405.1	JAUDDC000000000	SAMN34359435	97_BHI	Parasutterella secunda
GCA_030371705.1	JAUDBT000000000	SAMN34359481	ET72	Parasutterella secunda
GCA_030371345.1	JAUDDD000000000	SAMN34359434	95_BHI	Parasutterella secunda
GCA_030372325.1	JAUDDG000000000	SAMN34359431	88_Shaedler_sukc20	Parasutterella secunda
GCA_030372085.1	JAUDBS000000000	SAMN34359482	ET74	Parasutterella secunda
GCA_016901835.1	JACJKX000000000	SAMN14913579	An562	Parasutterella secunda
GCA_030371495.1	JAUDBV000000000	SAMN34359476	ET65	Phascolarctobacterium faecium
GCA_030371745.1	JAUDBU000000000	SAMN34359480	ET70	Phascolarctobacterium faecium
GCA_023336935.1	JAMBLR000000000	SAMN27738373	ET69	Phascolarctobacterium sp. ET69
GCA_024733835.1	JANRHJ000000000	SAMN30278304	ET62	Phocaeicola barnesiae
GCA_030371775.1	JAUDDK000000000	SAMN34359421	64_SSukc20	Phocaeicola barnesiae
GCA_030371385.1	JAUDDH000000000	SAMN34359427	75_SSukc20	Phocaeicola barnesiae
GCA_030371975.1	JAUDDP000000000	SAMN34359411	37_SSukc10	Phocaeicola barnesiae
GCA_030371865.1	JAUDDN000000000	SAMN34359415	46_SSukc10	Phocaeicola barnesiae
GCA_030371805.1	JAUDDL000000000	SAMN34359420	63_SSukc20	Phocaeicola barnesiae
GCA_030373715.1	JAUDCV000000000	SAMN34359444	ET1	Phocaeicola barnesiae
GCA_016899535.1	JACJIX000000000	SAMN14913659	An850	Phocaeicola coprocola
GCA_016901555.1	JACJKK000000000	SAMN14913599	An767	Phocaeicola coprocola
GCA_016900015.1	JACJJM000000000	SAMN14913637	An818	Phocaeicola coprophilus
GCA_002160605.1	NFKX00000000	SAMN06473628	An16	Phocaeicola dorei
GCA_002161715.1	NFIK00000000	SAMN06473723	An41	Phocaeicola dorei
GCA_023336975.1	JAMBLO000000000	SAMN27738370	ET8	Phocaeicola plebeius
GCA_024733775.1	JANRHL000000000	SAMN30278306	ET80	Phocaeicola plebeius
GCA_030373765.1	JAUDEF000000000	SAMN34359387	143_Shaedl_plusK	Phocaeicola plebeius
GCA_016902315.1	JACJLS000000000	SAMN14913552	An426	Phocaeicola plebeius
GCA_016902095.1	JACJLH000000000	SAMN14913566	An475	Phocaeicola plebeius
GCA_030373885.1	JAUDEH000000000	SAMN34359384	133_WCHN	Phocaeicola salanitronis
GCA_016902575.1	JACSNZ000000000	SAMN14913540	An386a	Pseudoflavonifractor capillosus
GCA_016899775.1	JACJJE000000000	SAMN14913646	An827	Pseudoflavonifractor capillosus
GCA_016899615.1	JACSNN000000000	SAMN14913654	An841	Pseudoflavonifractor capillosus
GCA_030372275.1	JAUDDJ000000000	SAMN34359423	69_Shaedler_sukc20	Pseudoflavonifractor phocaeensis
GCA_016899785.1	JACJJD000000000	SAMN14913647	An828	Pseudoflavonifractor phocaeensis
GCA_016902175.1	JACJLN000000000	SAMN14913559	An431c	Pseudoflavonifractor phocaeensis
GCA_016901735.1	JACLZC000000000	SAMN14913584	An569	Pseudoflavonifractor phocaeensis
GCA_016902055.1	JACJLF000000000	SAMN14913568	An485	Pseudoflavonifractor phocaeensis
GCA_016901955.1	JACJLC000000000	SAMN14913573	An507	Pseudoflavonifractor phocaeensis
GCA_002160435.1	NFKO00000000	SAMN06473640	An176	Pseudoflavonifractor sp. An176
GCA_002160305.1	NFKI00000000	SAMN06473647	An184	Pseudoflavonifractor sp. An184
GCA_002160275.1	NFKG00000000	SAMN06473650	An187	Pseudoflavonifractor sp. An187
GCA_002161675.1	NFIH00000000	SAMN06473726	An44	Pseudoflavonifractor sp. An44
GCA_002161235.1	NFHE00000000	SAMN06473765	An85	Pseudoflavonifractor sp. An85
GCA_030373895.1	JAUDEJ000000000	SAMN34359382	13_COKtk	Slackia piriformis
GCA_016899875.1	JACJJH000000000	SAMN14913642	An823	Streptococcus alactolyticus
GCA_023336955.1	JAMBLQ000000000	SAMN27738372	ET63	Succinatimonas hippei
GCA_030371425.1	JAUDBW000000000	SAMN34359475	ET64	Succinatimonas hippei
GCA_016899755.1	JACJJC000000000	SAMN14913648	An829	Sutterella massiliensis
GCA_030372065.1	JAUDEA000000000	SAMN34359393	153_Feed	Thermophilibacter provencensis
GCA_024733715.1	JANRHO000000000	SAMN30278309	ET337	Thermophilibacter sp. ET337
GCA_002159775.1	NFJI00000000	SAMN06473692	An26	Thomasclavelia spiroformis
GCA_002160695.1	NFLB00000000	SAMN06473619	An149	Thomasclavelia spiroformis
GCA_002160645.1	NFKY00000000	SAMN06473626	An158	Thomasclavelia spiroformis
GCA_016900805.1	JACJLM000000000	SAMN14913560	An433a	Thomasclavelia spiroformis
GCA_016901755.1	JACJKV000000000	SAMN14913583	An567	Thomasclavelia spiroformis
GCA_016902215.1	JACJLO000000000	SAMN14913556	An429	Thomasclavelia spiroformis
GCA_002161055.1	NFLT00000000	SAMN06473586	An114	Tyzzerella sp. An114
GCA_016902585.1	JACJMC000000000	SAMN14913538	An354	Veillonella magna
GCA_016901925.1	JACJLA000000000	SAMN14913576	An537	Veillonella magna
GCA_030373705.1	JAUDDB000000000	SAMN34359437	Avi1	[Clostridium] symbiosum
GCA_030371485.1	JAUDCA000000000	SAMN34359471	ET59	[Clostridium] symbiosum
GCA_030371545.1	JAUDCB000000000	SAMN34359470	ET58	[Clostridium] symbiosum
GCA_002161605.1	NFIE00000000	SAMN06473730	An5	[Collinsella] massiliensis
GCA_030371765.1	JAUDDI000000000	SAMN34359426	71_SSukc20	[Ruminococcus] torques

SRA Data Details

Parameter	Value
Data volume, Gbases	395
Data volume, Tbytes	0.17

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Whole genome sequencing of chicken gut anaerobes

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