ID 520878 - BioProject

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Accession: PRJNA520878 ID: 520878

48 Vancomycin Resistant Enterococcus faecium strains isolated from inpatients with bacteremia

Draft genome sequences of 48 vancomycin resistant E. faecium isolates recovered from inpatients with myeloma related cancer and exhibiting clinical signs of bacteremia.

Accession	PRJNA520878
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Udaondo Z et al., "Top-Down Genomic Surveillance Approach To Investigate the Genomic Epidemiology and Antibiotic Resistance Patterns of Enterococcus faecium Detected in Cancer Patients in Arkansas.", Microbiol Spectr, 2023 Jun 15;11(3):e0490122
Submission	Registration date: 4-Feb-2019 University of Arkansas for Medial Sciences
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	9358
WGS master	99
SRA Experiments	48
Protein Sequences	137094
Publications
PubMed	1
PMC	1
Other datasets
BioSample	99
Assembly	99

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

47
52
99

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_004300805.1	SEYR00000000	SAMN10869077	UAMSEF_06	Enterococcus faecium
GCA_004300775.1	SEYN00000000	SAMN10869081	UAMSEF_12	Enterococcus faecium
GCA_004300755.1	SEYV00000000	SAMN10869073	UAMSEF_02	Enterococcus faecium
GCA_004300725.1	SEYU00000000	SAMN10869074	UAMSEF_03	Enterococcus faecium
GCA_004300715.1	SEYP00000000	SAMN10869079	UAMSEF_10	Enterococcus faecium
GCA_004300655.1	SEYQ00000000	SAMN10869078	UAMSEF_07	Enterococcus faecium
GCA_004300705.1	SEYT00000000	SAMN10869075	UAMSEF_04	Enterococcus faecium
GCA_004300645.1	SEYS00000000	SAMN10869076	UAMSEF_05	Enterococcus faecium
GCA_004300635.1	SEYO00000000	SAMN10869080	UAMSEF_11	Enterococcus faecium
GCA_004300625.1	SEYM00000000	SAMN10869115	UAMSEF_47	Enterococcus faecium
GCA_004300605.1	SEYG00000000	SAMN10869087	UAMSEF_18	Enterococcus faecium
GCA_004300555.1	SEYH00000000	SAMN10869086	UAMSEF_17	Enterococcus faecium
GCA_004300535.1	SEXK00000000	SAMN10869109	UAMSEF_41	Enterococcus faecium
GCA_004300545.1	SEXZ00000000	SAMN10869094	UAMSEF_26	Enterococcus faecium
GCA_004300525.1	SEXL00000000	SAMN10869108	UAMSEF_40	Enterococcus faecium
GCA_004300505.1	SEXI00000000	SAMN10869111	UAMSEF_43	Enterococcus faecium
GCA_004300465.1	SEYJ00000000	SAMN10869084	UAMSEF_15	Enterococcus faecium
GCA_004300445.1	SEXF00000000	SAMN10869114	UAMSEF_46	Enterococcus faecium
GCA_004300435.1	SEXO00000000	SAMN10869105	UAMSEF_37	Enterococcus faecium
GCA_004300425.1	SEXU00000000	SAMN10869099	UAMSEF_31	Enterococcus faecium
GCA_004300395.1	SEXV00000000	SAMN10869098	UAMSEF_30	Enterococcus faecium
GCA_004300375.1	SEYA00000000	SAMN10869093	UAMSEF_25	Enterococcus faecium
GCA_004300355.1	SEXX00000000	SAMN10869096	UAMSEF_28	Enterococcus faecium
GCA_004300345.1	SEXE00000000	SAMN10869116	UAMSEF_48	Enterococcus faecium
GCA_004300315.1	SEYE00000000	SAMN10869089	UAMSEF_21	Enterococcus faecium
GCA_004300285.1	SEYF00000000	SAMN10869088	UAMSEF_19	Enterococcus faecium
GCA_004300275.1	SEYD00000000	SAMN10869090	UAMSEF_22	Enterococcus faecium
GCA_004300265.1	SEYC00000000	SAMN10869091	UAMSEF_23	Enterococcus faecium
GCA_004300245.1	SEYB00000000	SAMN10869092	UAMSEF_24	Enterococcus faecium
GCA_004300195.1	SEXW00000000	SAMN10869097	UAMSEF_29	Enterococcus faecium
GCA_004300185.1	SEXP00000000	SAMN10869104	UAMSEF_36	Enterococcus faecium
GCA_004300175.1	SEYL00000000	SAMN10869082	UAMSEF_13	Enterococcus faecium
GCA_004300165.1	SEXR00000000	SAMN10869102	UAMSEF_34	Enterococcus faecium
GCA_004300125.1	SEYI00000000	SAMN10869085	UAMSEF_16	Enterococcus faecium
GCA_004300115.1	SEXJ00000000	SAMN10869110	UAMSEF_42	Enterococcus faecium
GCA_004300105.1	SEXB00000000	SAMN10869119	UAMSEF_51	Enterococcus faecium
GCA_004300075.1	SEYK00000000	SAMN10869083	UAMSEF_14	Enterococcus faecium
GCA_004300065.1	SEXN00000000	SAMN10869106	UAMSEF_38	Enterococcus faecium
GCA_004300025.1	SEXC00000000	SAMN10869118	UAMSEF_50	Enterococcus faecium
GCA_004300005.1	SEXQ00000000	SAMN10869103	UAMSEF_35	Enterococcus faecium
GCA_004299995.1	SEXM00000000	SAMN10869107	UAMSEF_39	Enterococcus faecium
GCA_004299975.1	SEXS00000000	SAMN10869101	UAMSEF_33	Enterococcus faecium
GCA_004299965.1	SEXT00000000	SAMN10869100	UAMSEF_32	Enterococcus faecium
GCA_004299925.1	SEXD00000000	SAMN10869117	UAMSEF_49	Enterococcus faecium
GCA_004299905.1	SEXG00000000	SAMN10869113	UAMSEF_45	Enterococcus faecium
GCA_004299885.1	SEXH00000000	SAMN10869112	UAMSEF_44	Enterococcus faecium
GCA_004299875.1	SEXY00000000	SAMN10869095	UAMSEF_27	Enterococcus faecium
GCA_004299865.1	SEXA00000000	SAMN10869120	UAMSEF_52	Enterococcus faecium
GCA_029850245.1	JAOWKN000000000	SAMN31262489	UAMS_EF59	Enterococcus faecium
GCA_029850215.1	JAOWKM000000000	SAMN31262490	UAMS_EF60	Enterococcus faecium
GCA_029850205.1	JAOWKL000000000	SAMN31262491	UAMS_EF61	Enterococcus faecium
GCA_029850195.1	JAOWKK000000000	SAMN31262492	UAMS_EF62	Enterococcus faecium
GCA_029850175.1	JAOWKJ000000000	SAMN31262493	UAMS_EF63	Enterococcus faecium
GCA_029850155.1	JAOWKI000000000	SAMN31262494	UAMS_EF64	Enterococcus faecium
GCA_029850135.1	JAOWKD000000000	SAMN31262499	UAMS_EF69	Enterococcus faecium
GCA_029850105.1	JAOWKB000000000	SAMN31262501	UAMS_EF71	Enterococcus faecium
GCA_029850095.1	JAOWKH000000000	SAMN31262495	UAMS_EF65	Enterococcus faecium
GCA_029850075.1	JAOWJZ000000000	SAMN31262503	UAMS_EF73	Enterococcus faecium
GCA_029850055.1	JAOWJY000000000	SAMN31262504	UAMS_EF74	Enterococcus faecium
GCA_029850035.1	JAOWJX000000000	SAMN31262505	UAMS_EF75	Enterococcus faecium
GCA_029849995.1	JAOWJW000000000	SAMN31262506	UAMS_EF76	Enterococcus faecium
GCA_029849985.1	JAOWJV000000000	SAMN31262507	UAMS_EF77	Enterococcus faecium
GCA_029849955.1	JAOWJU000000000	SAMN31262508	UAMS_EF78	Enterococcus faecium
GCA_029849975.1	JAOWJR000000000	SAMN31262511	UAMS_EF81	Enterococcus faecium
GCA_029849935.1	JAOWIZ000000000	SAMN31262529	UAMS_EF99	Enterococcus faecium
GCA_029849915.1	JAOWJF000000000	SAMN31262523	UAMS_EF93	Enterococcus faecium
GCA_029849895.1	JAOWJK000000000	SAMN31262518	UAMS_EF88	Enterococcus faecium
GCA_029849865.1	JAOWJD000000000	SAMN31262525	UAMS_EF95	Enterococcus faecium
GCA_029849855.1	JAOWJP000000000	SAMN31262513	UAMS_EF83	Enterococcus faecium
GCA_029849835.1	JAOWKG000000000	SAMN31262496	UAMS_EF66	Enterococcus faecium
GCA_029849775.1	JAOWKF000000000	SAMN31262497	UAMS_EF67	Enterococcus faecium
GCA_029849785.1	JAOWKC000000000	SAMN31262500	UAMS_EF70	Enterococcus faecium
GCA_029849765.1	JAOWKA000000000	SAMN31262502	UAMS_EF72	Enterococcus faecium
GCA_029849755.1	JAOWKE000000000	SAMN31262498	UAMS_EF68	Enterococcus faecium
GCA_029849735.1	JAOWJT000000000	SAMN31262509	UAMS_EF79	Enterococcus faecium
GCA_029849715.1	JAOWJS000000000	SAMN31262510	UAMS_EF80	Enterococcus faecium
GCA_029849665.1	JAOWJN000000000	SAMN31262515	UAMS_EF85	Enterococcus faecium
GCA_029849675.1	JAOWJQ000000000	SAMN31262512	UAMS_EF82	Enterococcus faecium
GCA_029849655.1	JAOWJO000000000	SAMN31262514	UAMS_EF84	Enterococcus faecium
GCA_029849635.1	JAOWJM000000000	SAMN31262516	UAMS_EF86	Enterococcus faecium
GCA_029849615.1	JAOWJL000000000	SAMN31262517	UAMS_EF87	Enterococcus faecium
GCA_029849585.1	JAOWJJ000000000	SAMN31262519	UAMS_EF89	Enterococcus faecium
GCA_029849575.1	JAOWJI000000000	SAMN31262520	UAMS_EF90	Enterococcus faecium
GCA_029849545.1	JAOWJH000000000	SAMN31262521	UAMS_EF91	Enterococcus faecium
GCA_029849515.1	JAOWJE000000000	SAMN31262524	UAMS_EF94	Enterococcus faecium
GCA_029849505.1	JAOWJC000000000	SAMN31262526	UAMS_EF96	Enterococcus faecium
GCA_029849485.1	JAOWJG000000000	SAMN31262522	UAMS_EF92	Enterococcus faecium
GCA_029849465.1	JAOWJB000000000	SAMN31262527	UAMS_EF97	Enterococcus faecium
GCA_029849425.1	JAOWIY000000000	SAMN31262530	UAMS_EF100	Enterococcus faecium
GCA_029849415.1	JAOWJA000000000	SAMN31262528	UAMS_EF98	Enterococcus faecium
GCA_029849405.1	JAOWIX000000000	SAMN31262531	UAMS_EF101	Enterococcus faecium
GCA_029849385.1	JAOWIW000000000	SAMN31262532	UAMS_EF102	Enterococcus faecium
GCA_029849365.1	JAOWIU000000000	SAMN31262534	UAMS_EF104	Enterococcus faecium
GCA_029849335.1	JAOWIV000000000	SAMN31262533	UAMS_EF103	Enterococcus faecium
GCA_029849325.1	JAOWIT000000000	SAMN31262535	UAMS_EF105	Enterococcus faecium
GCA_029849305.1	JAOWIS000000000	SAMN31262536	UAMS_EF106	Enterococcus faecium
GCA_029849255.1	JAOWIR000000000	SAMN31262537	UAMS_EF107	Enterococcus faecium
GCA_029849235.1	JAOWIP000000000	SAMN31262539	UAMS_EF109	Enterococcus faecium
GCA_029849215.1	JAOWIQ000000000	SAMN31262538	UAMS_EF108	Enterococcus faecium

SRA Data Details

Parameter	Value
Data volume, Gbases	39
Data volume, Mbytes	17197

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48 Vancomycin Resistant Enterococcus faecium strains isolated from inpatients with bacteremia

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