Escherichia coli (ID 633873) - BioProject

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Accession: PRJNA633873 ID: 633873

Escherichia coli

Escherichia coli from human and chicken guts in Lima, Peru

See Genome Information for Escherichia coli

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We compared the genome assemblies of E. coli from 64 humans and 54 broiler chickens collected in Lima, Peru in 2017-2019, to look for potential transmission of antibiotic resistance genes from animals into human populations.

Accession	PRJNA633873
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 19-Jul-2020 Universidad Peruana Cayetano Heredia
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	113
SRA Experiments	118
Other datasets
BioSample	118
Assembly	113

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

78
35
113

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_013425265.1	JACCNA000000000	SAMN15516001	PE01_650	Escherichia coli
GCA_013425255.1	JACCNB000000000	SAMN15515999	PE01_648	Escherichia coli
GCA_013425235.1	JACCPF000000000	SAMN15515906	PE01_007	Escherichia coli
GCA_013425225.1	JACCPA000000000	SAMN15515944	PE01_350	Escherichia coli
GCA_013425205.1	JACCOM000000000	SAMN15515977	PE01_625	Escherichia coli
GCA_013425175.1	JACCMZ000000000	SAMN15516004	PE01_653	Escherichia coli
GCA_013425145.1	JACCOA000000000	SAMN15516003	PE01_652	Escherichia coli
GCA_013425125.1	JACCMY000000000	SAMN15516005	PE01_654	Escherichia coli
GCA_013425135.1	JACCOL000000000	SAMN15515978	PE01_626	Escherichia coli
GCA_013425105.1	JACCNK000000000	SAMN15515979	PE01_627	Escherichia coli
GCA_013425085.1	JACCNV000000000	SAMN15515931	PE01_276	Escherichia coli
GCA_013425065.1	JACCPE000000000	SAMN15515940	PE01_346	Escherichia coli
GCA_013425035.1	JACCNT000000000	SAMN15515937	PE01_343	Escherichia coli
GCA_013425025.1	JACCNU000000000	SAMN15515932	PE01_277	Escherichia coli
GCA_013424995.1	JACCPD000000000	SAMN15515941	PE01_347	Escherichia coli
GCA_013424985.1	JACCPC000000000	SAMN15515942	PE01_348	Escherichia coli
GCA_013424925.1	JACCNQ000000000	SAMN15515951	PE01_357	Escherichia coli
GCA_013424935.1	JACCNP000000000	SAMN15515952	PE01_358	Escherichia coli
GCA_013424915.1	JACCOW000000000	SAMN15515954	PE01_360	Escherichia coli
GCA_013424905.1	JACCOX000000000	SAMN15515953	PE01_359	Escherichia coli
GCA_013424885.1	JACCNO000000000	SAMN15515956	PE01_362	Escherichia coli
GCA_013424835.1	JACCNN000000000	SAMN15515959	PE01_368	Escherichia coli
GCA_013424825.1	JACCOV000000000	SAMN15515957	PE01_363	Escherichia coli
GCA_013424815.1	JACCOU000000000	SAMN15515962	PE01_371	Escherichia coli
GCA_013424805.1	JACCOT000000000	SAMN15515964	PE01_373	Escherichia coli
GCA_013424785.1	JACCOS000000000	SAMN15515965	PE01_374	Escherichia coli
GCA_013424765.1	JACCOR000000000	SAMN15515966	PE01_376	Escherichia coli
GCA_013424705.1	JACCNM000000000	SAMN15515971	PE01_388	Escherichia coli
GCA_013424725.1	JACCOQ000000000	SAMN15515969	PE01_383	Escherichia coli
GCA_013424715.1	JACCNL000000000	SAMN15515973	PE01_621	Escherichia coli
GCA_013424685.1	JACCNJ000000000	SAMN15515980	PE01_628	Escherichia coli
GCA_013424665.1	JACCOK000000000	SAMN15515981	PE01_629	Escherichia coli
GCA_013424625.1	JACCOJ000000000	SAMN15515982	PE01_630	Escherichia coli
GCA_013424615.1	JACCNW000000000	SAMN15515917	PE01_199	Escherichia coli
GCA_013424605.1	JACCOI000000000	SAMN15515983	PE01_631	Escherichia coli
GCA_013424585.1	JACCOZ000000000	SAMN15515945	PE01_351	Escherichia coli
GCA_013424535.1	JACCNH000000000	SAMN15515985	PE01_633	Escherichia coli
GCA_013424545.1	JACCNI000000000	SAMN15515984	PE01_632	Escherichia coli
GCA_013424515.1	JACCOH000000000	SAMN15515986	PE01_634	Escherichia coli
GCA_013424505.1	JACCNS000000000	SAMN15515946	PE01_352	Escherichia coli
GCA_013424485.1	JACCPB000000000	SAMN15515943	PE01_349	Escherichia coli
GCA_013424455.1	JACCNG000000000	SAMN15515987	PE01_635	Escherichia coli
GCA_013424425.1	JACCNF000000000	SAMN15515988	PE01_636	Escherichia coli
GCA_013424405.1	JACCOG000000000	SAMN15515989	PE01_637	Escherichia coli
GCA_013424415.1	JACCNR000000000	SAMN15515947	PE01_353	Escherichia coli
GCA_013424385.1	JACCNE000000000	SAMN15515991	PE01_640	Escherichia coli
GCA_013424325.1	JACCOF000000000	SAMN15515992	PE01_641	Escherichia coli
GCA_013424335.1	JACCOY000000000	SAMN15515949	PE01_355	Escherichia coli
GCA_013424305.1	JACCOC000000000	SAMN15515996	PE01_645	Escherichia coli
GCA_013424315.1	JACCOE000000000	SAMN15515993	PE01_642	Escherichia coli
GCA_013424285.1	JACCND000000000	SAMN15515994	PE01_643	Escherichia coli
GCA_013424255.1	JACCMW000000000	SAMN15516008	PE01_657	Escherichia coli
GCA_013424245.1	JACCOO000000000	SAMN15515975	PE01_623	Escherichia coli
GCA_013424195.1	JACCOB000000000	SAMN15516000	PE01_649	Escherichia coli
GCA_013424205.1	JACCNC000000000	SAMN15515998	PE01_647	Escherichia coli
GCA_013424185.1	JACCOD000000000	SAMN15515995	PE01_644	Escherichia coli
GCA_013424145.1	JACCMX000000000	SAMN15516007	PE01_656	Escherichia coli
GCA_013424115.1	JACCNZ000000000	SAMN15516011	PE01_660	Escherichia coli
GCA_013424105.1	JACCMT000000000	SAMN15516013	PE01_662	Escherichia coli
GCA_013424095.1	JACCMU000000000	SAMN15516012	PE01_661	Escherichia coli
GCA_013424085.1	JACCMV000000000	SAMN15516010	PE01_659	Escherichia coli
GCA_013424065.1	JACCOP000000000	SAMN15515974	PE01_622	Escherichia coli
GCA_013424045.1	JACCNX000000000	SAMN15516018	PE01_667	Escherichia coli
GCA_013424005.1	JACCMR000000000	SAMN15516017	PE01_666	Escherichia coli
GCA_013423995.1	JACCON000000000	SAMN15515976	PE01_624	Escherichia coli
GCA_013423985.1	JACCNY000000000	SAMN15516015	PE01_664	Escherichia coli
GCA_013423945.1	JACCMS000000000	SAMN15516016	PE01_665	Escherichia coli
GCA_013520815.1	JACDVT000000000	SAMN15515905	PE01_006	Escherichia coli
GCA_013520825.1	JACDVU000000000	SAMN15515902	PE01_002	Escherichia coli
GCA_013520775.1	JACDWO000000000	SAMN15515903	PE01_003	Escherichia coli
GCA_013520765.1	JACDWP000000000	SAMN15515901	PE01_001	Escherichia coli
GCA_013520755.1	JACDWN000000000	SAMN15515904	PE01_004	Escherichia coli
GCA_013520725.1	JACDWM000000000	SAMN15515908	PE01_091	Escherichia coli
GCA_013520715.1	JACDWL000000000	SAMN15515910	PE01_099	Escherichia coli
GCA_013519915.1	JACDUX000000000	SAMN15516009	PE01_658	Escherichia coli
GCA_013519945.1	JACDUW000000000	SAMN15516014	PE01_663	Escherichia coli
GCA_013519975.1	JACDUY000000000	SAMN15515997	PE01_646	Escherichia coli
GCA_013519955.1	JACDWA000000000	SAMN15515948	PE01_354	Escherichia coli
GCA_013520155.1	JACDVB000000000	SAMN15515967	PE01_380	Escherichia coli
GCA_013520065.1	JACDVM000000000	SAMN15515918	PE01_200	Escherichia coli
GCA_013520055.1	JACDVN000000000	SAMN15515916	PE01_198	Escherichia coli
GCA_013520095.1	JACDVP000000000	SAMN15515914	PE01_196	Escherichia coli
GCA_013520015.1	JACDVO000000000	SAMN15515915	PE01_197	Escherichia coli
GCA_013520025.1	JACDVW000000000	SAMN15515990	PE01_638	Escherichia coli
GCA_013520105.1	JACDUZ000000000	SAMN15515972	PE01_620	Escherichia coli
GCA_013520125.1	JACDVA000000000	SAMN15515970	PE01_384	Escherichia coli
GCA_013520175.1	JACDVX000000000	SAMN15515968	PE01_381	Escherichia coli
GCA_013520205.1	JACDVY000000000	SAMN15515963	PE01_372	Escherichia coli
GCA_013520215.1	JACDVZ000000000	SAMN15515960	PE01_369	Escherichia coli
GCA_013520195.1	JACDVC000000000	SAMN15515958	PE01_365	Escherichia coli
GCA_013520665.1	JACDVR000000000	SAMN15515911	PE01_193	Escherichia coli
GCA_013520645.1	JACDVQ000000000	SAMN15515913	PE01_195	Escherichia coli
GCA_013520635.1	JACDWJ000000000	SAMN15515920	PE01_202	Escherichia coli
GCA_013520605.1	JACDWK000000000	SAMN15515912	PE01_194	Escherichia coli
GCA_013520595.1	JACDVV000000000	SAMN15516002	PE01_651	Escherichia coli
GCA_013520695.1	JACDVS000000000	SAMN15515907	PE01_008	Escherichia coli
GCA_013520565.1	JACDVK000000000	SAMN15515921	PE01_203	Escherichia coli
GCA_013520555.1	JACDVL000000000	SAMN15515919	PE01_201	Escherichia coli
GCA_013520525.1	JACDVJ000000000	SAMN15515924	PE01_215	Escherichia coli
GCA_013520515.1	JACDWI000000000	SAMN15515922	PE01_204	Escherichia coli
GCA_013520495.1	JACDWH000000000	SAMN15515923	PE01_205	Escherichia coli
GCA_013520445.1	JACDVH000000000	SAMN15515927	PE01_219	Escherichia coli
GCA_013520435.1	JACDWG000000000	SAMN15515925	PE01_217	Escherichia coli
GCA_013520395.1	JACDWD000000000	SAMN15515930	PE01_229	Escherichia coli
GCA_013520375.1	JACDWF000000000	SAMN15515928	PE01_221	Escherichia coli
GCA_013520305.1	JACDVF000000000	SAMN15515936	PE01_342	Escherichia coli
GCA_013520335.1	JACDWB000000000	SAMN15515939	PE01_345	Escherichia coli
GCA_013520295.1	JACDVG000000000	SAMN15515935	PE01_341	Escherichia coli
GCA_013520285.1	JACDWC000000000	SAMN15515938	PE01_344	Escherichia coli
GCA_013520275.1	JACDVE000000000	SAMN15515950	PE01_356	Escherichia coli
GCA_013520475.1	JACDVI000000000	SAMN15515926	PE01_218	Escherichia coli
GCA_013520385.1	JACDWE000000000	SAMN15515929	PE01_222	Escherichia coli
GCA_013520245.1	JACDVD000000000	SAMN15515955	PE01_361	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	54
Data volume, Mbytes	32971

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Escherichia coli

Escherichia coli from human and chicken guts in Lima, Peru

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