ID 922334 - BioProject

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Accession: PRJNA922334 ID: 922334

Litoditis marina microbiome

Marine nematodes are the most abundant metazoans in marine sediments. Here We used Illumina, Nanopore, and PacBio to sequence the representative bacterial communities, HQbiome, in the L. More...

Accession	PRJNA922334
Data Type	Genome sequencing
Scope	Multispecies
Publications	Xue Y et al., "The marine environmental microbiome mediates physiological outcomes in host nematodes.", BMC Biol, 2024 Oct 8;22(1):224 Published online: Xue Y et al., "The marine environmental microbiome mediates physiological outcomes in host nematodes", BMC Biology, 2024;22(1)
Submission	Registration date: 10-Jan-2023 Institute of Oceanology, Chinese Academy of Sciences
Relevance	Model Organism

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	65
WGS master	57
SRA Experiments	73
Publications
PubMed	1
PMC	1
Other datasets
BioSample	74
Assembly	57

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

52
5
57

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_043422335.1	JBHOGZ000000000	SAMN32650249	HQB-91	Aliivibrio fischeri
GCA_043421885.1	JBHOGS000000000	SAMN32650256	HQB-118	Alkalihalobacillus macyae
GCA_043420335.1	JBHOGM000000000	SAMN32650266	HQB-172	Alteromonas gracilis
GCA_043640715.1	JBHOFL000000000	SAMN32650302	HQB-491	Aquipseudomonas alcaligenes
GCA_043419515.1	JBHOFP000000000	SAMN32650297	HQB-464	Arthrobacter pityocampae
GCA_043421875.1	JBHOGQ000000000	SAMN32650258	HQB-127	Bacillus altitudinis
GCA_043420195.1	JBHOGH000000000	SAMN32650273	HQB-200	Bacillus thuringiensis
GCA_043419915.1	JBHOGA000000000	SAMN32650283	HQB-332	Brachybacterium vulturis
GCA_043422215.1	JBHOGY000000000	SAMN32650250	HQB-94	Cytobacillus oceanisediminis
GCA_043419715.1	JBHOFU000000000	SAMN32650290	HQB-410	Enterovibrio calviensis
GCA_042768255.1	JBHJOV000000000	SAMN32650305	OP50	Escherichia coli
GCA_043419415.1	JBHOFJ000000000	SAMN32650304	HQB-498	Galactobacter valiniphilus
GCA_043420315.1	JBHOGJ000000000	SAMN32650271	HQB-181	Halobacillus trueperi
GCA_043419555.1	JBHOFR000000000	SAMN32650293	HQB-429	Halopseudomonas laoshanensis
GCA_043419435.1	JBHOFK000000000	SAMN32650303	HQB-497	Lactococcus chungangensis
GCA_043419995.1	JBHOGC000000000	SAMN32650280	HQB-294	Litoreibacter albidus
GCA_043420035.1	JBHOGE000000000	SAMN32650278	HQB-279	Loktanella salsilacus
GCA_043419595.1	JBHOFS000000000	SAMN32650292	HQB-428	Marinagarivorans algicola
GCA_043420055.1	JBHOGD000000000	SAMN32650279	HQB-281	Marinobacter nauticus
GCA_043422505.1	JBHOHF000000000	SAMN32650242	HQB-55	Marinomonas posidonica
GCA_043421905.1	JBHOGP000000000	SAMN32650260	HQB-138	Metabacillus halosaccharovorans
GCA_043419565.1	JBHOFQ000000000	SAMN32650295	HQB-452	Microbacterium foliorum
GCA_043419865.1	JBHOFY000000000	SAMN32650285	HQB-347	Neptunomonas phycophila
GCA_043419455.1	JBHOFM000000000	SAMN32650301	HQB-484	Niallia oryzisoli
GCA_043420155.1	JBHOGG000000000	SAMN32650276	HQB-263	Paenisporosarcina quisquiliarum
GCA_043420045.1	JBHOGF000000000	SAMN32650277	HQB-267	Paracoccus marcusii
GCA_043419485.1	JBHOFO000000000	SAMN32650299	HQB-471	Photobacterium piscicola
GCA_043419685.1	JBHOFT000000000	SAMN32650291	HQB-423	Planococcus donghaensis
GCA_043422065.1	JBHOGX000000000	SAMN32650251	HQB-99	Priestia aryabhattai
GCA_043420325.1	JBHOGI000000000	SAMN32650272	HQB-187	Pseudoalteromonas atlantica
GCA_043422635.1	JBHOHH000000000	SAMN32650239	HQB-34	Pseudoalteromonas spongiae
GCA_043422495.1	JBHOHE000000000	SAMN32650244	HQB-75	Pseudoalteromonas tetraodonis
GCA_043419975.1	JBHOGB000000000	SAMN32650282	HQB-325	Pseudoclavibacter helvolus
GCA_043422095.1	JBHOGW000000000	SAMN32650252	HQB-107	Pseudomonas putida
GCA_043419765.1	JBHOFX000000000	SAMN32650287	HQB-361	Psychrobacter nivimaris
GCA_043419785.1	JBHOFW000000000	SAMN32650288	HQB-372	Psychrobacter piscatorii
GCA_043419835.1	JBHOFV000000000	SAMN32650289	HQB-399	Saccharospirillum alexandrii
GCA_043422765.1	JBHOHM000000000	SAMN32650233	HQB-5	Shewanella algae
GCA_043422275.1	JBHOHA000000000	SAMN32650248	HQB-90	Shewanella atlantica
GCA_043422435.1	JBHOHD000000000	SAMN32650245	HQB-76	Shewanella colwelliana
GCA_043422285.1	JBHOHB000000000	SAMN32650247	HQB-88	Shewanella maritima
GCA_043422295.1	JBHOHC000000000	SAMN32650246	HQB-86	Shewanella waksmanii
GCA_043421925.1	JBHOGR000000000	SAMN32650257	HQB-123	Staphylococcus warneri
GCA_043422055.1	JBHOGV000000000	SAMN32650253	HQB-110	Thalassotalea litorea
GCA_043422045.1	JBHOGT000000000	SAMN32650255	HQB-114	Vibrio astriarenae
GCA_043419855.1	JBHOFZ000000000	SAMN32650284	HQB-345	Vibrio atypicus
GCA_043420345.1	JBHOGL000000000	SAMN32650267	HQB-174	Vibrio campbellii
GCA_043422695.1	JBHOHK000000000	SAMN32650236	HQB-20	Vibrio chagasii
GCA_043422735.1	JBHOHL000000000	SAMN32650235	HQB-19	Vibrio harveyi
GCA_043420475.1	JBHOGN000000000	SAMN32650265	HQB-171	Vibrio hepatarius
GCA_043422775.1	JBHOHJ000000000	SAMN32650237	HQB-21	Vibrio maritimus
GCA_043422515.1	JBHOHI000000000	SAMN32650238	HQB-22	Vibrio parahaemolyticus
GCA_043422015.1	JBHOGU000000000	SAMN32650254	HQB-111	Vibrio profundi
GCA_043420235.1	JBHOGK000000000	SAMN32650268	HQB-177	Yoonia maritima
GCA_043421945.1	JBHOGO000000000	SAMN32650261	HQB-150	bacterium sp. HQB-150
GCA_043422575.1	JBHOHG000000000	SAMN32650240	HQB-39	bacterium sp. HQB-39
GCA_043419465.1	JBHOFN000000000	SAMN32650300	HQB-473	bacterium sp. HQB-473

SRA Data Details

Parameter	Value
Data volume, Gbases	92
Data volume, Mbytes	43077

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Litoditis marina microbiome

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