ID 934919 - BioProject

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Accession: PRJNA934919 ID: 934919

Sequencing of phytopathogenic Streptomyces

Whole genome sequencing of common scab causing Streptomyces

Accession	PRJNA934919
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Weisberg AJ et al., "Diverse mobile genetic elements shaped the evolution of Streptomyces virulence.", Microb Genom, 2023 Nov;9(11)
Submission	Registration date: 14-Feb-2023 Oregon State University
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	165
SRA Experiments	166
Publications
PubMed	1
PMC	1
Other datasets
BioSample	166
Assembly	165

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

163
2
165

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_033793425.1	JARBWH000000000	SAMN33288052	NB05-1C	Kribbella solani
GCA_033793375.1	JARBWG000000000	SAMN33288054	NB05-2F	Kribbella solani
GCA_033793345.1	JARBWF000000000	SAMN33288055	NC06-04C	Nonomuraea angiospora
GCA_033795045.1	JARAZS000000000	SAMN33287967	ATCC 49003	Streptomyces acidiscabies
GCA_033793055.1	JARAWC000000000	SAMN33288069	NRRL_B-16521	Streptomyces acidiscabies
GCA_033793405.1	JARAWP000000000	SAMN33288053	NB05-1H	Streptomyces acidiscabies
GCA_033793285.1	JARAWK000000000	SAMN33288060	NE20-1-1	Streptomyces caniscabiei
GCA_033793265.1	JARAWJ000000000	SAMN33288061	NE20-4-1	Streptomyces caniscabiei
GCA_033793215.1	JARAWH000000000	SAMN33288063	NE20-7-2	Streptomyces caniscabiei
GCA_033793205.1	JARAWI000000000	SAMN33288062	NE20-5-1	Streptomyces caniscabiei
GCA_033793185.1	JARAWG000000000	SAMN33288064	NE20-8-2	Streptomyces caniscabiei
GCA_033792205.1	JARAUV000000000	SAMN33288102	TX20-1-4	Streptomyces caniscabiei
GCA_033792395.1	JARAUW000000000	SAMN33288101	TX07-03E	Streptomyces caniscabiei
GCA_033792405.1	JARAUX000000000	SAMN33288100	TX07-01D	Streptomyces caniscabiei
GCA_033794825.1	JARAZF000000000	SAMN33287981	ID05-11E	Streptomyces caniscabiei
GCA_033794785.1	JARAZE000000000	SAMN33287982	ID05-16B	Streptomyces caniscabiei
GCA_033794645.1	JARAYX000000000	SAMN33287990	ID05-8D	Streptomyces caniscabiei
GCA_033794625.1	JARAYW000000000	SAMN33287991	ID06-15	Streptomyces europaeiscabiei
GCA_033794585.1	JARAYU000000000	SAMN33287993	ID09-01A	Streptomyces europaeiscabiei
GCA_033794595.1	JARAYV000000000	SAMN33287992	ID06-18B	Streptomyces europaeiscabiei
GCA_033794565.1	JARAYT000000000	SAMN33287994	ID09-01C	Streptomyces europaeiscabiei
GCA_033794695.1	JARAZA000000000	SAMN33287986	ID05-21E	Streptomyces europaeiscabiei
GCA_033794765.1	JARAZC000000000	SAMN33287984	ID05-17B	Streptomyces europaeiscabiei
GCA_033794805.1	JARAZD000000000	SAMN33287983	ID05-17A	Streptomyces europaeiscabiei
GCA_033794885.1	JARAZJ000000000	SAMN33287976	ID01-16c	Streptomyces europaeiscabiei
GCA_033794865.1	JARAZH000000000	SAMN33287978	ID02-12	Streptomyces europaeiscabiei
GCA_033795065.1	JARAZT000000000	SAMN33287966	AK08-04D	Streptomyces europaeiscabiei
GCA_033795155.1	JARAZY000000000	SAMN33287961	AK05-03A	Streptomyces europaeiscabiei
GCA_033795095.1	JARAZU000000000	SAMN33287965	AK08-03	Streptomyces europaeiscabiei
GCA_033794465.1	JARAYP000000000	SAMN33287999	MB09-03E	Streptomyces europaeiscabiei
GCA_033795265.1	JARBAC000000000	SAMN33287957	AK02-03a	Streptomyces europaeiscabiei
GCA_033795245.1	JARBAD000000000	SAMN33287956	AK02-02a	Streptomyces europaeiscabiei
GCA_033792465.1	JARAUR000000000	SAMN33288106	WA08-09A	Streptomyces europaeiscabiei
GCA_033792445.1	JARAUS000000000	SAMN33288105	WA08-02C	Streptomyces europaeiscabiei
GCA_033792165.1	JARAUT000000000	SAMN33288104	WA08-01A	Streptomyces europaeiscabiei
GCA_033793305.1	JARAWN000000000	SAMN33288057	ND06-05F	Streptomyces europaeiscabiei
GCA_033793015.1	JARAVY000000000	SAMN33288073	NRRL_B-2795	Streptomyces griseiscabiei
GCA_033793105.1	JARGEC000000000	SAMN33288068	NRRL_B-12321	Streptomyces ipomoeae
GCA_033792535.1	JARAVA000000000	SAMN33288097	SIPOLA-1	Streptomyces ipomoeae
GCA_033792525.1	JARAVB000000000	SAMN33288096	SIPOB16470	Streptomyces ipomoeae
GCA_033792595.1	JARAVD000000000	SAMN33288094	SIPO8144	Streptomyces ipomoeae
GCA_033792495.1	JARAVC000000000	SAMN33288095	SIPO8803	Streptomyces ipomoeae
GCA_033794345.1	JARAYJ000000000	SAMN33288005	MD20-5-1	Streptomyces niveiscabiei
GCA_033794245.1	JARAYE000000000	SAMN33288011	ME02-6974-4A	Streptomyces scabiei
GCA_033794445.1	JARAYN000000000	SAMN33288000	MD13-11C	Streptomyces scabiei
GCA_033794415.1	JARAYM000000000	SAMN33288002	MD13-3A	Streptomyces scabiei
GCA_033794385.1	JARAYK000000000	SAMN33288004	MD20-2-1	Streptomyces scabiei
GCA_033794365.1	JARAYI000000000	SAMN33288007	ME01-11h	Streptomyces scabiei
GCA_033794095.1	JARAXY000000000	SAMN33288017	ME02-6979-4A	Streptomyces scabiei
GCA_033795285.1	JARAYO000000000	SAMN33287954	84.102	Streptomyces scabiei
GCA_033794935.1	JARAZM000000000	SAMN33287973	FL07-03A	Streptomyces scabiei
GCA_033795025.1	JARAZR000000000	SAMN33287968	ATCC 49173	Streptomyces scabiei
GCA_033794545.1	JARAYS000000000	SAMN33287995	IN05-1A	Streptomyces scabiei
GCA_033792145.1	JARAUQ000000000	SAMN33288107	WI03-01A	Streptomyces scabiei
GCA_033792125.1	JARAUP000000000	SAMN33288108	WI03-04c	Streptomyces scabiei
GCA_033791925.1	JARAUF000000000	SAMN33288118	WV02-1a	Streptomyces scabiei
GCA_033791965.1	JARAUH000000000	SAMN33288116	WI06-36G	Streptomyces scabiei
GCA_033792485.1	JARAUY000000000	SAMN33288099	TX06-03B	Streptomyces scabiei
GCA_033792515.1	JARAUZ000000000	SAMN33288098	TX06-03A	Streptomyces scabiei
GCA_033792585.1	JARAVE000000000	SAMN33288093	R4	Streptomyces scabiei
GCA_033792655.1	JARAVF000000000	SAMN33288092	PA18-05B	Streptomyces scabiei
GCA_033792635.1	JARAVG000000000	SAMN33288091	PA18-04A	Streptomyces scabiei
GCA_033792845.1	JARAVP000000000	SAMN33288082	OR07-01A	Streptomyces scabiei
GCA_033792865.1	JARAVR000000000	SAMN33288080	OH01-5d	Streptomyces scabiei
GCA_033792695.1	JARAVI000000000	SAMN33288089	PA06-03A	Streptomyces scabiei
GCA_033792945.1	JARAVV000000000	SAMN33288076	NY05-01A	Streptomyces scabiei
GCA_033792925.1	JARAVU000000000	SAMN33288077	NY05-07C	Streptomyces scabiei
GCA_033792885.1	JARAVS000000000	SAMN33288079	OH01-12C	Streptomyces scabiei
GCA_033792825.1	JARAVQ000000000	SAMN33288081	OR05-1	Streptomyces scabiei
GCA_033793155.1	JARAWE000000000	SAMN33288066	NJ08-05B	Streptomyces scabiei
GCA_033793145.1	JARAWF000000000	SAMN33288065	NJ08-04B	Streptomyces scabiei
GCA_033793115.1	JARAWD000000000	SAMN33288067	NJ08-06A	Streptomyces scabiei
GCA_033793725.1	JARAXE000000000	SAMN33288037	ME19-01-7	Streptomyces scabiei
GCA_033793705.1	JARAXC000000000	SAMN33288039	ME19-04-2	Streptomyces scabiei
GCA_033793485.1	JARAWR000000000	SAMN33288050	MN05-36A	Streptomyces scabiei
GCA_033793465.1	JARAWS000000000	SAMN33288049	MN05-35A	Streptomyces scabiei
GCA_033793445.1	JARAWQ000000000	SAMN33288051	MN05-36F	Streptomyces scabiei
GCA_033793865.1	JARAXM000000000	SAMN33288028	ME06-36	Streptomyces scabiei
GCA_033793765.1	JARAXI000000000	SAMN33288033	ME18-2-1	Streptomyces scabiei
GCA_033793785.1	JARAXG000000000	SAMN33288035	ME18-3-1	Streptomyces scabiei
GCA_033793925.1	JARAXL000000000	SAMN33288030	ME11-02C	Streptomyces scabiei
GCA_033793775.1	JARAXH000000000	SAMN33288034	ME18-2-3	Streptomyces scabiei
GCA_033793665.1	JARAXB000000000	SAMN33288040	ME19-08-1	Streptomyces scabiei
GCA_033793625.1	JARAXA000000000	SAMN33288041	ME19-08-4	Streptomyces scabiei
GCA_033793595.1	JARAWZ000000000	SAMN33288042	ME19-09-4	Streptomyces scabiei
GCA_033793565.1	JARAWW000000000	SAMN33288045	MI05-07D	Streptomyces scabiei
GCA_033793545.1	JARAWV000000000	SAMN33288046	MI06-04D	Streptomyces scabiei
GCA_033793515.1	JARAWU000000000	SAMN33288047	MN03-5003B	Streptomyces scabiei
GCA_033660025.1	JARGEG000000000	SAMN33288001	MD13-11E	Streptomyces scabiei
GCA_033795305.1	JARBAE000000000	SAMN33287955	AK02-01A	Streptomyces sp. AK02-01A
GCA_033795225.1	JARBAB000000000	SAMN33287958	AK02-04a	Streptomyces sp. AK02-04a
GCA_033795195.1	JARBAA000000000	SAMN33287959	AK04-3B	Streptomyces sp. AK04-3B
GCA_033795185.1	JARAZZ000000000	SAMN33287960	AK04-4c	Streptomyces sp. AK04-4c
GCA_033795145.1	JARAZX000000000	SAMN33287962	AK08-01A	Streptomyces sp. AK08-01A
GCA_033795125.1	JARAZW000000000	SAMN33287963	AK08-01B	Streptomyces sp. AK08-01B
GCA_033795085.1	JARAZV000000000	SAMN33287964	AK08-02	Streptomyces sp. AK08-02
GCA_033794985.1	JARAZQ000000000	SAMN33287969	ATCC 51928	Streptomyces sp. ATCC51928
GCA_033844265.1	JARAZO000000000	SAMN33287971	DE06-01C	Streptomyces sp. DE06-01C
GCA_033794975.1	JARAZN000000000	SAMN33287972	FL06-04B	Streptomyces sp. FL06-04B
GCA_033794925.1	JARAZL000000000	SAMN33287974	FL07-04A	Streptomyces sp. FL07-04A
GCA_033794905.1	JARAZK000000000	SAMN33287975	ID01-15d	Streptomyces sp. ID01-15D
GCA_033844245.1	JARAZI000000000	SAMN33287977	ID01-9D	Streptomyces sp. ID01-9D
GCA_033794835.1	JARAZG000000000	SAMN33287979	ID03-2B	Streptomyces sp. ID03-2B
GCA_033844225.1	JARDAD000000000	SAMN33287980	ID05-04B	Streptomyces sp. ID05-04B
GCA_033794735.1	JARAZB000000000	SAMN33287985	ID05-18	Streptomyces sp. ID05-18
GCA_033794685.1	JARAYZ000000000	SAMN33287987	ID05-26A	Streptomyces sp. ID05-26A
GCA_033794725.1	JARGEF000000000	SAMN33287988	ID05-39B	Streptomyces sp. ID05-39B
GCA_033794665.1	JARAYY000000000	SAMN33287989	ID05-47C	Streptomyces sp. ID05-47C
GCA_033794505.1	JARAYQ000000000	SAMN33287997	MB09-01	Streptomyces sp. MB09-01
GCA_033794485.1	JARGEE000000000	SAMN33287998	MB09-02B	Streptomyces sp. MB09-02B
GCA_033794405.1	JARAYL000000000	SAMN33288003	MD20-1-1	Streptomyces sp. MD20-1-1
GCA_033794325.1	JARAYH000000000	SAMN33288008	ME01-18a	Streptomyces sp. ME01-18a
GCA_033794285.1	JARAYG000000000	SAMN33288009	ME01-18h	Streptomyces sp. ME01-18h
GCA_033794295.1	JARAYF000000000	SAMN33288010	ME01-24h	Streptomyces sp. ME01-24h
GCA_033794255.1	JARAYD000000000	SAMN33288012	ME02-6977A	Streptomyces sp. ME02-6977A
GCA_033794215.1	JARAYC000000000	SAMN33288013	ME02-6978.2a	Streptomyces sp. ME02-6978.2a
GCA_033794185.1	JARAYB000000000	SAMN33288014	ME02-6978a	Streptomyces sp. ME02-6978a
GCA_033794165.1	JARAXZ000000000	SAMN33288016	ME02-6979-3A	Streptomyces sp. ME02-6979-3A
GCA_033794145.1	JARAXX000000000	SAMN33288018	ME02-6979.5a	Streptomyces sp. ME02-6979.5a
GCA_033794085.1	JARAXW000000000	SAMN33288019	ME02-6979A	Streptomyces sp. ME02-6979A
GCA_033794105.1	JARAXV000000000	SAMN33288020	ME02-6985-2c	Streptomyces sp. ME02-6985-2c
GCA_033794065.1	JARAXU000000000	SAMN33288021	ME02-6987-2C	Streptomyces sp. ME02-6987-2C
GCA_033794025.1	JARAXT000000000	SAMN33288022	ME02-6991-2A	Streptomyces sp. ME02-6991-2A
GCA_033794015.1	JARAXS000000000	SAMN33288023	ME02-6991-2B	Streptomyces sp. ME02-6991-2B
GCA_033793995.1	JARAXQ000000000	SAMN33288024	ME02-7008A	Streptomyces sp. ME02-7008A
GCA_033793985.1	JARAXR000000000	SAMN33287953	ME02-7008A-1	Streptomyces sp. ME02-7008A-1
GCA_033793965.1	JARAXP000000000	SAMN33288025	ME02-8801-2C	Streptomyces sp. ME02-8801-2C
GCA_033793905.1	JARAXO000000000	SAMN33288026	ME03-5684b	Streptomyces sp. ME03-5684b
GCA_033793875.1	JARAXN000000000	SAMN33288027	ME03-5709C	Streptomyces sp. ME03-5709C
GCA_033793935.1	JARGED000000000	SAMN33288029	ME08-AFT2	Streptomyces sp. ME08-AFT2
GCA_033793795.1	JARAXK000000000	SAMN33288031	ME12-02E	Streptomyces sp. ME12-02E
GCA_033793825.1	JARAXJ000000000	SAMN33288032	ME18-1-4	Streptomyces sp. ME18-1-4
GCA_033793745.1	JARAXF000000000	SAMN33288036	ME19-01-6	Streptomyces sp. ME19-01-6
GCA_033793685.1	JARAXD000000000	SAMN33288038	ME19-03-3	Streptomyces sp. ME19-03-3
GCA_033793635.1	JARAWY000000000	SAMN33288043	MI02-2A	Streptomyces sp. MI02-2A
GCA_033793585.1	JARAWX000000000	SAMN33288044	MI02-7B	Streptomyces sp. MI02-7b
GCA_033793495.1	JARAWT000000000	SAMN33288048	MN03-5084-2B	Streptomyces sp. MN03-5084-2B
GCA_033793365.1	JARAWO000000000	SAMN33288056	ND04-05B	Streptomyces sp. ND04-05B
GCA_033793315.1	JARAWM000000000	SAMN33288058	NE06-03C	Streptomyces sp. NE06-03C
GCA_033793245.1	JARAWL000000000	SAMN33288059	NE06-03E	Streptomyces sp. NE06-03E
GCA_033793065.1	JARAWB000000000	SAMN33288070	NRRL_B-16638	Streptomyces sp. NRRL_B-16638
GCA_033793045.1	JARAWA000000000	SAMN33288071	NRRL_B-2249	Streptomyces sp. NRRL_B-2249
GCA_033793005.1	JARAVZ000000000	SAMN33288072	NRRL_B-2557	Streptomyces sp. NRRL_B-2557
GCA_033792965.1	JARAVX000000000	SAMN33288074	NRRL_ISP-5395	Streptomyces sp. NRRL_ISP-5395
GCA_033792905.1	JARAVT000000000	SAMN33288078	NY05-11A	Streptomyces sp. NY05-11A
GCA_033792805.1	JARAVO000000000	SAMN33288083	PA03-1a	Streptomyces sp. PA03-1a
GCA_033792785.1	JARAVN000000000	SAMN33288084	PA03-2a	Streptomyces sp. PA03-2a
GCA_033792735.1	JARAVM000000000	SAMN33288085	PA03-3a	Streptomyces sp. PA03-3a
GCA_033792725.1	JARAVL000000000	SAMN33288086	PA03-5A	Streptomyces sp. PA03-5A
GCA_033792765.1	JARAVK000000000	SAMN33288087	PA03-6a	Streptomyces sp. PA03-6a
GCA_033792185.1	JARAUU000000000	SAMN33288103	TX20-6-3	Streptomyces sp. TX20-6-3
GCA_033792105.1	JARAUO000000000	SAMN33288109	WI03-4A	Streptomyces sp. WI03-4A
GCA_033792085.1	JARAUN000000000	SAMN33288110	WI03-5B	Streptomyces sp. WI03-5b
GCA_033792065.1	JARAUM000000000	SAMN33288111	WI04-05A	Streptomyces sp. WI04-05A
GCA_033792045.1	JARAUL000000000	SAMN33288112	WI04-05B	Streptomyces sp. WI04-05B
GCA_033792025.1	JARAUK000000000	SAMN33288113	WI04-08A	Streptomyces stelliscabiei
GCA_033792005.1	JARAUI000000000	SAMN33288115	WI06-15D	Streptomyces stelliscabiei
GCA_033791985.1	JARAUJ000000000	SAMN33288114	WI04-09A	Streptomyces stelliscabiei
GCA_033791945.1	JARAUG000000000	SAMN33288117	WI06-6E	Streptomyces stelliscabiei
GCA_033792975.1	JARAVW000000000	SAMN33288075	NY02-3A	Streptomyces stelliscabiei
GCA_033792685.1	JARAVJ000000000	SAMN33288088	PA06-02B	Streptomyces stelliscabiei
GCA_033792625.1	JARAVH000000000	SAMN33288090	PA06-2D	Streptomyces stelliscabiei
GCA_033794205.1	JARAYA000000000	SAMN33288015	ME02-6978b	Streptomyces stelliscabiei
GCA_033794525.1	JARAYR000000000	SAMN33287996	IN05-2E	Streptomyces stelliscabiei
GCA_033794965.1	JARAZP000000000	SAMN33287970	ATCC 700248	Streptomyces turgidiscabies

SRA Data Details

Parameter	Value
Data volume, Gbases	206
Data volume, Tbytes	0.10

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Sequencing of phytopathogenic Streptomyces

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