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Accession: PRJNA169907 ID: 169907

The Tria Project

Mountain Pine Beetle System Genomics

The Tria Project: Mountain Pine Beetle System Genomics - using genomics of the interacting bark beetles, fungal pathogens and host pine trees to improve forest ecological risk models and inform economic models for more reliable prediction of feedstock supply from renewable forest inventory for forest-based industry, such as the emerging lignocellulosic bioenergy industry.

This large-scale genomics research project on the mountain pine beetle (MPB) epidemic is funded under Genome Canada’s competition in Applied Genomics Research in Bioproducts or Crops with cofunding provided by Genome British Columbia, Genome Alberta, and the University of Alberta.

AccessionPRJNA169907
TypeUmbrella Comparative genomics project (Subtype:Comparative genomics)
Publications (total 31)
  • Janes JK et al., "How the mountain pine beetle (Dendroctonus ponderosae) breached the Canadian Rocky Mountains.", Mol Biol Evol, 2014 Jul;31(7):1803-15
More...
SubmissionRegistration date: 3-Jul-2012
The Tria Project
NCBI Links
RelevanceEnvironmental
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)74575
WGS master4
TSA master5
Transcript64312
SRA Experiments92
Protein Sequences39024
Publications
PubMed35
PMC16
Other datasets
BioSample107
GEO DataSets2
Assembly4
GEO Data Details
ParameterValue
Data volume, Spots912384
Data volume, Processed Mbytes75
Data volume, Supplementary Mbytes1651
SRA Data Details
ParameterValue
Data volume, Gbases471
Data volume, Tbytes0.32
The Tria Project encompasses the following 18 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Scaffolds
No data links
Total

4
4
8
BioProject
accession
Assembly
level
OrganismTitle
PRJNA162621 ScaffoldsDendroctonus ponderosaeDendroctonus ponderosae Genome sequencing and assembly (The Tria Project: Mountain...)
PRJNA360270 No data linksDendroctonus ponderosaeDendroctonus ponderosae RefSeq Genome sequencing (NCBI)
PRJNA182051 No data linksGrosmannia clavigera UAMH 11153Grosmannia clavigera Genome Resequencing (University of British Columbia)
PRJNA39837 ScaffoldsGrosmannia clavigera kw1407WGS sequencing (The Tria Project)
PRJNA264104 ScaffoldsGrosmannia clavigera kw1407Grosmannia clavigera kw1407 RefSeq Genome (NCBI)
List all 8 'Genome sequencing' projects...
transcriptome10
BioProject
accession
OrganismTitle
PRJNA187208Dendroctonus frontalisTranscriptome of Dendroctonus frontalis, the southern pine beetle (University of British Columbia)
PRJNA157397Dendroctonus ponderosaeDendroctonus ponderosae Transcriptome or Gene expression (The Tria Project: Mountain...)
PRJNA178770Dendroctonus ponderosaeAntennal transcriptome analysis of the chemosensory gene families of Dendroctonus ponderosae (The Tria Project: Mountain...)
PRJNA189792Dendroctonus ponderosaeDendroctonus ponderosae Transcriptome (University of British Columbia)
PRJNA189795Dendroctonus ponderosaeDendroctonus ponderosae Hybrid Transcriptome Assembly of Sanger and 454 sequences (University of British Columbia)
List all 10 'transcriptome' projects...

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