ID 186413 - BioProject

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Accession: PRJNA186413 ID: 186413

Escherichia coli as human pathogen

See Genome Information for Escherichia coli

Uncomplicated urinary tract infection (UTI) and UTI induced bacteremia. The sequencing of several collections of E. coli urinary and blood isolates will provide insight into: a) the genetic determinants associated with infection of the urinary tract both among women and men, b) the genetic determinants associated with the relapse and persistence of E. coli in spite of treatment for UTI and c) the genetic determinants associated with the dissemination to the blood. Study funded by NIAID.

Accession	PRJNA186413
Type	Umbrella project (Subtype:Disease)
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Submission	Registration date: 11-Jan-2013 Broad Institute
Related Resources	E. coli in UTI and Bacteremia at Broad Institute

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	19308
WGS master	317
SRA Experiments	901
Protein Sequences	1538461
Other datasets
BioSample	355
Assembly	317

SRA Data Details

Parameter	Value
Data volume, Gbases	637
Data volume, Tbytes	0.35

This project encompasses the following 325 sub-projects:

Project Type

Number of Projects

Genome sequencing

Highest level of assembly :

Scaffolds
SRA or Trace
No data links
Total

317
7
1
325

BioProject accession	Assembly level	Organism	Title
PRJNA187989	No data links	Escherichia coli	E coli UTI Bacteremia Multiisolate Project (Broad Institute)
PRJNA186038	Scaffolds	Escherichia coli HVH 1 (4-6876161)	E coli UTI Bacteremia (Broad Institute)
PRJNA186046	Scaffolds	Escherichia coli HVH 10 (4-6832164)	E coli UTI Bacteremia (Broad Institute)
PRJNA186121	Scaffolds	Escherichia coli HVH 100 (4-2850729)	E coli UTI Bacteremia (Broad Institute)
PRJNA186122	SRA or Trace	Escherichia coli HVH 101 (4-6859844)	E coli UTI Bacteremia (Broad Institute)

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Escherichia coli as human pathogen

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